RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 SMC2O95347 1197 aa17.53■□□□□ 0.4
COL17A1-201ENST00000353479 SLF2Q8IX21 1173 aa17.53■□□□□ 0.4
COL17A1-201ENST00000353479 MRE11P49959 708 aa17.53■□□□□ 0.4
COL17A1-201ENST00000353479 ZNF444Q8N0Y2 327 aaPredicted RBP17.53■□□□□ 0.4
COL17A1-201ENST00000353479 FAM13BQ9NYF5 915 aa17.53■□□□□ 0.4
COL17A1-201ENST00000353479 PLEKHH1Q9ULM0 1364 aa17.53■□□□□ 0.4
COL17A1-201ENST00000353479 OFD1O75665 1012 aa17.53■□□□□ 0.4
COL17A1-201ENST00000353479 ANKRD18AQ8IVF6 992 aa17.52■□□□□ 0.4
COL17A1-201ENST00000353479 TNMDQ9H2S6 317 aa17.52■□□□□ 0.4
COL17A1-201ENST00000353479 KAT6BQ8WYB5 2073 aa17.52■□□□□ 0.4
COL17A1-201ENST00000353479 IL13P35225 146 aa17.52■□□□□ 0.4
COL17A1-201ENST00000353479 TBC1D9Q6ZT07 1266 aa17.52■□□□□ 0.4
COL17A1-201ENST00000353479 SAMD9LQ8IVG5 1584 aa17.52■□□□□ 0.4
COL17A1-201ENST00000353479 CCDC70Q6NSX1 233 aa17.52■□□□□ 0.4
COL17A1-201ENST00000353479 FERMT3Q86UX7 667 aa17.52■□□□□ 0.4
COL17A1-201ENST00000353479 TNNQ9UQP3 1299 aa17.52■□□□□ 0.4
COL17A1-201ENST00000353479 PCDHB15Q9Y5E8 787 aa17.52■□□□□ 0.4
COL17A1-201ENST00000353479 TTC22Q5TAA0 569 aa17.52■□□□□ 0.39
COL17A1-201ENST00000353479 CFAP45Q9UL16 551 aa17.52■□□□□ 0.39
COL17A1-201ENST00000353479 BMP2KLQ5H9B9 411 aa17.51■□□□□ 0.39
COL17A1-201ENST00000353479 SLAIN2Q9P270 581 aa17.51■□□□□ 0.39
COL17A1-201ENST00000353479 BRPF1P55201 1214 aaPredicted RBP17.51■□□□□ 0.39
COL17A1-201ENST00000353479 CWF19L2Q2TBE0 894 aaKnown RBP17.51■□□□□ 0.39
COL17A1-201ENST00000353479 CCDC82Q8N4S0 544 aa17.51■□□□□ 0.39
COL17A1-201ENST00000353479 MAGEC2Q9UBF1 373 aaPredicted RBP17.51■□□□□ 0.39
COL17A1-201ENST00000353479 TTC37Q6PGP7 1564 aa17.51■□□□□ 0.39
COL17A1-201ENST00000353479 HDAC1Q13547 482 aaPredicted RBP17.51■□□□□ 0.39
COL17A1-201ENST00000353479 IQCA1Q86XH1 822 aa17.51■□□□□ 0.39
COL17A1-201ENST00000353479 NLRP3Q96P20 1036 aa17.51■□□□□ 0.39
COL17A1-201ENST00000353479 ZNF76P36508 570 aa17.51■□□□□ 0.39
COL17A1-201ENST00000353479 UTP14AQ9BVJ6 771 aaKnown RBP17.51■□□□□ 0.39
COL17A1-201ENST00000353479 HMGB1P09429 215 aaKnown RBP17.5■□□□□ 0.39
COL17A1-201ENST00000353479 TSPOAP1O95153 1857 aa17.5■□□□□ 0.39
COL17A1-201ENST00000353479 ANKRD44Q8N8A2 993 aa17.5■□□□□ 0.39
COL17A1-201ENST00000353479 LINS1Q8NG48 757 aa17.5■□□□□ 0.39
COL17A1-201ENST00000353479 RNF41Q9H4P4 317 aaPredicted RBP17.5■□□□□ 0.39
COL17A1-201ENST00000353479 SEC63Q9UGP8 760 aaKnown RBP17.5■□□□□ 0.39
COL17A1-201ENST00000353479 GCC2Q8IWJ2 1684 aa17.5■□□□□ 0.39
COL17A1-201ENST00000353479 ATP8B2P98198 1209 aa17.5■□□□□ 0.39
COL17A1-201ENST00000353479 NUCB1Q02818 461 aa17.5■□□□□ 0.39
COL17A1-201ENST00000353479 LARP6Q9BRS8 491 aaKnown RBP17.5■□□□□ 0.39
COL17A1-201ENST00000353479 CIZ1Q9ULV3 898 aaPredicted RBP17.5■□□□□ 0.39
COL17A1-201ENST00000353479 CTCFLQ8NI51 663 aaPredicted RBP17.49■□□□□ 0.39
COL17A1-201ENST00000353479 IQSEC3Q9UPP2 1182 aaPredicted RBP17.49■□□□□ 0.39
COL17A1-201ENST00000353479 SLC12A7Q9Y666 1083 aa17.49■□□□□ 0.39
COL17A1-201ENST00000353479 IFIT3O14879 490 aaKnown RBP17.49■□□□□ 0.39
COL17A1-201ENST00000353479 SSBP05455 408 aaKnown RBP eCLIP17.49■□□□□ 0.39
COL17A1-201ENST00000353479 PA2G4Q9UQ80 394 aaKnown RBP17.49■□□□□ 0.39
COL17A1-201ENST00000353479 RTCBQ9Y3I0 505 aaKnown RBP17.49■□□□□ 0.39
COL17A1-201ENST00000353479 UQCRFS1P1P0C7P4 283 aa17.49■□□□□ 0.39
COL17A1-201ENST00000353479 HAND2P61296 217 aa17.49■□□□□ 0.39
COL17A1-201ENST00000353479 ATP2B3Q16720 1220 aa17.49■□□□□ 0.39
COL17A1-201ENST00000353479 FILIP1LQ4L180 1135 aa17.49■□□□□ 0.39
COL17A1-201ENST00000353479 CT47A1Q5JQC4 288 aaPredicted RBP17.49■□□□□ 0.39
COL17A1-201ENST00000353479 ZCCHC11Q5TAX3 1644 aaKnown RBP17.49■□□□□ 0.39
COL17A1-201ENST00000353479 SLC4A8Q2Y0W8 1093 aa17.49■□□□□ 0.39
COL17A1-201ENST00000353479 PHAXQ9H814 394 aaKnown RBP17.49■□□□□ 0.39
COL17A1-201ENST00000353479 LDHCP07864 332 aa17.48■□□□□ 0.39
COL17A1-201ENST00000353479 CNKSR2Q8WXI2 1034 aa17.48■□□□□ 0.39
COL17A1-201ENST00000353479 CCDC192P0DO97 292 aa17.48■□□□□ 0.39
COL17A1-201ENST00000353479 CCDC196A0A1B0GTZ2 297 aa17.48■□□□□ 0.39
COL17A1-201ENST00000353479 TFCP2L1Q9NZI6 479 aa17.48■□□□□ 0.39
COL17A1-201ENST00000353479 CCDC96Q2M329 555 aa17.47■□□□□ 0.39
COL17A1-201ENST00000353479 SH2B1Q9NRF2 756 aaPredicted RBP17.47■□□□□ 0.39
COL17A1-201ENST00000353479 SPTY2D1Q68D10 685 aaPredicted RBP17.47■□□□□ 0.39
COL17A1-201ENST00000353479 BAG3O95817 575 aa17.47■□□□□ 0.39
COL17A1-201ENST00000353479 GOLGA8BA8MQT2 603 aa17.46■□□□□ 0.39
COL17A1-201ENST00000353479 CCT2P78371 535 aaKnown RBP17.46■□□□□ 0.39
COL17A1-201ENST00000353479 IL15P40933 162 aaPredicted RBP17.46■□□□□ 0.39
COL17A1-201ENST00000353479 GUCY1B3Q02153 619 aa17.46■□□□□ 0.39
COL17A1-201ENST00000353479 LIMCH1Q9UPQ0 1083 aa17.46■□□□□ 0.39
COL17A1-201ENST00000353479 PLEKHG3A1L390 1219 aa17.46■□□□□ 0.39
COL17A1-201ENST00000353479 PTPRTO14522 1441 aa17.46■□□□□ 0.39
COL17A1-201ENST00000353479 RLBP1P12271 317 aa17.46■□□□□ 0.38
COL17A1-201ENST00000353479 CCDC39Q9UFE4 941 aa17.46■□□□□ 0.38
COL17A1-201ENST00000353479 GOLGA8AA7E2F4 631 aa17.45■□□□□ 0.38
COL17A1-201ENST00000353479 ZNF790Q6PG37 636 aa17.45■□□□□ 0.38
COL17A1-201ENST00000353479 STIM1Q13586 685 aa17.45■□□□□ 0.38
COL17A1-201ENST00000353479 LGR6Q9HBX8 967 aa17.45■□□□□ 0.38
COL17A1-201ENST00000353479 NPC1L1Q9UHC9 1359 aa17.45■□□□□ 0.38
COL17A1-201ENST00000353479 IRS4O14654 1257 aaPredicted RBP17.45■□□□□ 0.38
COL17A1-201ENST00000353479 SDSP20132 328 aa17.45■□□□□ 0.38
COL17A1-201ENST00000353479 PDE1AP54750 535 aa17.45■□□□□ 0.38
COL17A1-201ENST00000353479 C8orf76Q96K31 380 aa17.45■□□□□ 0.38
COL17A1-201ENST00000353479 ARHGEF10O15013 1369 aa17.45■□□□□ 0.38
COL17A1-201ENST00000353479 PDIA4P13667 645 aaKnown RBP17.45■□□□□ 0.38
COL17A1-201ENST00000353479 TPTE2Q6XPS3 522 aa17.45■□□□□ 0.38
COL17A1-201ENST00000353479 NYXQ9GZU5 481 aa17.45■□□□□ 0.38
COL17A1-201ENST00000353479 SERPINC1P01008 464 aa17.44■□□□□ 0.38
COL17A1-201ENST00000353479 TTLL5Q6EMB2 1281 aa17.44■□□□□ 0.38
COL17A1-201ENST00000353479 CDCA7Q9BWT1 371 aaPredicted RBP17.44■□□□□ 0.38
COL17A1-201ENST00000353479 TTLL12Q14166 644 aaPredicted RBP17.44■□□□□ 0.38
COL17A1-201ENST00000353479 DACH1Q9UI36 760 aa17.44■□□□□ 0.38
COL17A1-201ENST00000353479 C16orf71Q8IYS4 520 aaPredicted RBP17.44■□□□□ 0.38
COL17A1-201ENST00000353479 GNPATO15228 680 aa17.43■□□□□ 0.38
COL17A1-201ENST00000353479 CATIPQ7Z7H3 387 aa17.43■□□□□ 0.38
COL17A1-201ENST00000353479 DDX21Q9NR30 783 aaKnown RBP eCLIP17.43■□□□□ 0.38
COL17A1-201ENST00000353479 MCM4P33991 863 aa17.43■□□□□ 0.38
COL17A1-201ENST00000353479 CEP131Q9UPN4 1083 aa17.43■□□□□ 0.38
COL17A1-201ENST00000353479 WWC2Q6AWC2 1192 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms