RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 UPF3BQ9BZI7 483 aaKnown RBP26.82■■□□□ 1.88
UPF3A-201ENST00000351487 SLC52A2Q9HAB3 445 aa26.82■■□□□ 1.88
UPF3A-201ENST00000351487 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.82■■□□□ 1.88
UPF3A-201ENST00000351487 MEGF6O75095 1541 aa26.81■■□□□ 1.88
UPF3A-201ENST00000351487 ECHDC1Q9NTX5 307 aa26.81■■□□□ 1.88
UPF3A-201ENST00000351487 PKD1L3Q7Z443 1732 aa26.81■■□□□ 1.88
UPF3A-201ENST00000351487 GPATCH3Q96I76 525 aa26.8■■□□□ 1.88
UPF3A-201ENST00000351487 KAZALD1Q96I82 304 aa26.8■■□□□ 1.88
UPF3A-201ENST00000351487 PHKG2P15735 406 aa26.8■■□□□ 1.88
UPF3A-201ENST00000351487 SUCLG2Q96I99 432 aa26.8■■□□□ 1.88
UPF3A-201ENST00000351487 STRCP1A6NGW2 1772 aa26.79■■□□□ 1.88
UPF3A-201ENST00000351487 SNX14Q9Y5W7 946 aa26.79■■□□□ 1.88
UPF3A-201ENST00000351487 TATP17735 454 aaPredicted RBP26.78■■□□□ 1.88
UPF3A-201ENST00000351487 SPG7Q9UQ90 795 aa26.78■■□□□ 1.88
UPF3A-201ENST00000351487 PRPF40AO75400 957 aaKnown RBP26.78■■□□□ 1.88
UPF3A-201ENST00000351487 NLRP2Q9NX02 1062 aa26.78■■□□□ 1.88
UPF3A-201ENST00000351487 PA2G4Q9UQ80 394 aaKnown RBP26.78■■□□□ 1.88
UPF3A-201ENST00000351487 CAVIN1Q6NZI2 390 aaKnown RBP26.77■■□□□ 1.88
UPF3A-201ENST00000351487 ZSCAN23Q3MJ62 389 aa26.77■■□□□ 1.88
UPF3A-201ENST00000351487 CWC27Q6UX04 472 aaKnown RBP26.77■■□□□ 1.88
UPF3A-201ENST00000351487 KIAA1211Q6ZU35 1233 aa26.77■■□□□ 1.88
UPF3A-201ENST00000351487 RUFY2Q8WXA3 655 aa26.77■■□□□ 1.88
UPF3A-201ENST00000351487 TTC14Q96N46 770 aa26.77■■□□□ 1.88
UPF3A-201ENST00000351487 IFIT2P09913 472 aaKnown RBP26.76■■□□□ 1.87
UPF3A-201ENST00000351487 ATF3P18847 181 aa26.76■■□□□ 1.87
UPF3A-201ENST00000351487 LARP1Q6PKG0 1096 aaKnown RBP26.76■■□□□ 1.87
UPF3A-201ENST00000351487 GPT2Q8TD30 523 aa26.76■■□□□ 1.87
UPF3A-201ENST00000351487 BICC1Q9H694 974 aaKnown RBP26.76■■□□□ 1.87
UPF3A-201ENST00000351487 TMEM94Q12767 1356 aa26.76■■□□□ 1.87
UPF3A-201ENST00000351487 IGKV5-2P06315 115 aa26.75■■□□□ 1.87
UPF3A-201ENST00000351487 NOL8Q76FK4 1167 aaKnown RBP26.75■■□□□ 1.87
UPF3A-201ENST00000351487 DIAPH3Q9NSV4 1193 aa26.75■■□□□ 1.87
UPF3A-201ENST00000351487 SLC39A6Q13433 755 aa26.75■■□□□ 1.87
UPF3A-201ENST00000351487 TNS3Q68CZ2 1445 aa26.75■■□□□ 1.87
UPF3A-201ENST00000351487 AIMP1Q12904 312 aaKnown RBP26.74■■□□□ 1.87
UPF3A-201ENST00000351487 PARP4Q9UKK3 1724 aaKnown RBP26.74■■□□□ 1.87
UPF3A-201ENST00000351487 IFNL2Q8IZJ0 200 aa26.74■■□□□ 1.87
UPF3A-201ENST00000351487 EVI5LQ96CN4 794 aa26.74■■□□□ 1.87
UPF3A-201ENST00000351487 RIC3Q7Z5B4 369 aa26.73■■□□□ 1.87
UPF3A-201ENST00000351487 AACSQ86V21 672 aa26.73■■□□□ 1.87
UPF3A-201ENST00000351487 RASEFQ8IZ41 740 aa26.73■■□□□ 1.87
UPF3A-201ENST00000351487 SASH1O94885 1247 aa26.73■■□□□ 1.87
UPF3A-201ENST00000351487 NASPP49321 788 aaPredicted RBP26.73■■□□□ 1.87
UPF3A-201ENST00000351487 NFATC2IPQ8NCF5 419 aa26.73■■□□□ 1.87
UPF3A-201ENST00000351487 NEURL1BA8MQ27 555 aa26.72■■□□□ 1.87
UPF3A-201ENST00000351487 NCLP19338 710 aaKnown RBP26.72■■□□□ 1.87
UPF3A-201ENST00000351487 NEXNQ0ZGT2 675 aa26.72■■□□□ 1.87
UPF3A-201ENST00000351487 LAMB4A4D0S4 1761 aa26.72■■□□□ 1.87
UPF3A-201ENST00000351487 MBD3O95983 291 aa26.71■■□□□ 1.87
UPF3A-201ENST00000351487 G3BP1Q13283 466 aaKnown RBP eCLIP26.71■■□□□ 1.87
UPF3A-201ENST00000351487 ZNF496Q96IT1 587 aaPredicted RBP26.71■■□□□ 1.87
UPF3A-201ENST00000351487 LRP10Q7Z4F1 713 aa26.7■■□□□ 1.87
UPF3A-201ENST00000351487 KCNB2Q92953 911 aa26.7■■□□□ 1.87
UPF3A-201ENST00000351487 DCAF5Q96JK2 942 aa26.7■■□□□ 1.87
UPF3A-201ENST00000351487 METTL22Q9BUU2 404 aaPredicted RBP26.7■■□□□ 1.87
UPF3A-201ENST00000351487 GLI3P10071 1580 aa26.7■■□□□ 1.86
UPF3A-201ENST00000351487 AFDNP55196 1824 aaKnown RBP26.7■■□□□ 1.86
UPF3A-201ENST00000351487 CLCN1P35523 988 aa26.7■■□□□ 1.86
UPF3A-201ENST00000351487 CCDC173Q0VFZ6 552 aa26.7■■□□□ 1.86
UPF3A-201ENST00000351487 GCKRQ14397 625 aa26.7■■□□□ 1.86
UPF3A-201ENST00000351487 XAGE3Q8WTP9 111 aa26.7■■□□□ 1.86
UPF3A-201ENST00000351487 CHAMP1Q96JM3 812 aa26.7■■□□□ 1.86
UPF3A-201ENST00000351487 PPP1R9BQ96SB3 815 aa26.7■■□□□ 1.86
UPF3A-201ENST00000351487 WDR33Q9C0J8 1336 aaKnown RBP26.69■■□□□ 1.86
UPF3A-201ENST00000351487 ARFGEF2Q9Y6D5 1785 aa26.69■■□□□ 1.86
UPF3A-201ENST00000351487 EAF2Q96CJ1 260 aaPredicted RBP26.69■■□□□ 1.86
UPF3A-201ENST00000351487 FOXD4L5Q5VV16 416 aaPredicted RBP26.69■■□□□ 1.86
UPF3A-201ENST00000351487 FOXD4L4Q8WXT5 416 aaPredicted RBP26.69■■□□□ 1.86
UPF3A-201ENST00000351487 DDX17Q92841 729 aaKnown RBP26.69■■□□□ 1.86
UPF3A-201ENST00000351487 AK2P54819 239 aa26.68■■□□□ 1.86
UPF3A-201ENST00000351487 CPDO75976 1380 aa26.68■■□□□ 1.86
UPF3A-201ENST00000351487 HIP1O00291 1037 aa26.67■■□□□ 1.86
UPF3A-201ENST00000351487 SNRPA1P09661 255 aaKnown RBP26.67■■□□□ 1.86
UPF3A-201ENST00000351487 MYL6BP14649 208 aa26.67■■□□□ 1.86
UPF3A-201ENST00000351487 COPS6Q7L5N1 327 aa26.67■■□□□ 1.86
UPF3A-201ENST00000351487 LIMCH1Q9UPQ0 1083 aa26.67■■□□□ 1.86
UPF3A-201ENST00000351487 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP26.67■■□□□ 1.86
UPF3A-201ENST00000351487 COL15A1P39059 1388 aa26.67■■□□□ 1.86
UPF3A-201ENST00000351487 RPAP1Q9BWH6 1393 aaPredicted RBP26.67■■□□□ 1.86
UPF3A-201ENST00000351487 CYP27B1O15528 508 aa26.67■■□□□ 1.86
UPF3A-201ENST00000351487 TM6SF1Q9BZW5 370 aa26.67■■□□□ 1.86
UPF3A-201ENST00000351487 SNRKQ9NRH2 765 aa26.67■■□□□ 1.86
UPF3A-201ENST00000351487 CSB-PGBD3P0DP91 1061 aa26.66■■□□□ 1.86
UPF3A-201ENST00000351487 PTH1RQ03431 593 aa26.66■■□□□ 1.86
UPF3A-201ENST00000351487 RUFY3Q7L099 469 aa26.66■■□□□ 1.86
UPF3A-201ENST00000351487 TMEM63CQ9P1W3 806 aa26.66■■□□□ 1.86
UPF3A-201ENST00000351487 TRIM44Q96DX7 344 aaPredicted RBP26.66■■□□□ 1.86
UPF3A-201ENST00000351487 CCDC171Q6TFL3 1326 aa26.66■■□□□ 1.86
UPF3A-201ENST00000351487 CADPS2Q86UW7 1296 aa26.65■■□□□ 1.86
UPF3A-201ENST00000351487 TTC5Q8N0Z6 440 aa26.65■■□□□ 1.86
UPF3A-201ENST00000351487 ANKRD13DQ6ZTN6 518 aa26.65■■□□□ 1.86
UPF3A-201ENST00000351487 MYD88Q99836 296 aa26.65■■□□□ 1.86
UPF3A-201ENST00000351487 RBM27Q9P2N5 1060 aaKnown RBP26.65■■□□□ 1.86
UPF3A-201ENST00000351487 ESPNB1AK53 854 aa26.64■■□□□ 1.86
UPF3A-201ENST00000351487 CASTP20810 708 aaKnown RBP26.64■■□□□ 1.86
UPF3A-201ENST00000351487 FMNL2Q96PY5 1086 aa26.64■■□□□ 1.86
UPF3A-201ENST00000351487 NSFL1CQ9UNZ2 370 aaKnown RBP26.64■■□□□ 1.86
UPF3A-201ENST00000351487 SPATA31A3Q5VYP0 1347 aa26.64■■□□□ 1.85
UPF3A-201ENST00000351487 NECTIN1Q15223 517 aa26.63■■□□□ 1.85
UPF3A-201ENST00000351487 ANP32BQ92688 251 aaKnown RBP26.63■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms