RNA–Protein interactions for RNA: ENST00000347037.9

SYNE1-202, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,798 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-202ENST00000347037 GOLGA6L4A6NEF3 574 aa13.22□□□□□ -0.29
SYNE1-202ENST00000347037 NBPF7P0C2Y1 421 aaPredicted RBP13.22□□□□□ -0.29
SYNE1-202ENST00000347037 FUCA2Q9BTY2 467 aa13.22□□□□□ -0.29
SYNE1-202ENST00000347037 TECPR2O15040 1411 aa13.22□□□□□ -0.29
SYNE1-202ENST00000347037 MON2Q7Z3U7 1717 aa13.22□□□□□ -0.29
SYNE1-202ENST00000347037 ARHGEF10O15013 1369 aa13.22□□□□□ -0.29
SYNE1-202ENST00000347037 DMTNQ08495 405 aa13.22□□□□□ -0.29
SYNE1-202ENST00000347037 LARP1BQ659C4 914 aaKnown RBP13.22□□□□□ -0.29
SYNE1-202ENST00000347037 LUZP1Q86V48 1076 aa13.22□□□□□ -0.29
SYNE1-202ENST00000347037 IL17RAQ96F46 866 aa13.22□□□□□ -0.29
SYNE1-202ENST00000347037 ESF1Q9H501 851 aaKnown RBP13.22□□□□□ -0.29
SYNE1-202ENST00000347037 ADAMTS13Q76LX8 1427 aa13.22□□□□□ -0.29
SYNE1-202ENST00000347037 NRKQ7Z2Y5 1582 aa13.22□□□□□ -0.29
SYNE1-202ENST00000347037 ZSCAN20P17040 1043 aaPredicted RBP13.22□□□□□ -0.29
SYNE1-202ENST00000347037 ITSN1Q15811 1721 aa13.21□□□□□ -0.29
SYNE1-202ENST00000347037 TOPAZ1Q8N9V7 1692 aa13.21□□□□□ -0.29
SYNE1-202ENST00000347037 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.21□□□□□ -0.29
SYNE1-202ENST00000347037 U2AF2P26368 475 aaKnown RBP eCLIP13.21□□□□□ -0.29
SYNE1-202ENST00000347037 MAP3K11Q16584 847 aa13.21□□□□□ -0.29
SYNE1-202ENST00000347037 NUP62CLQ9H1M0 184 aa13.21□□□□□ -0.29
SYNE1-202ENST00000347037 EPB41L2O43491 1005 aaKnown RBP13.21□□□□□ -0.3
SYNE1-202ENST00000347037 TPM3P06753 285 aa13.21□□□□□ -0.3
SYNE1-202ENST00000347037 NGDNQ8NEJ9 315 aaKnown RBP13.21□□□□□ -0.3
SYNE1-202ENST00000347037 RUFY2Q8WXA3 655 aa13.21□□□□□ -0.3
SYNE1-202ENST00000347037 TCEANC2Q96MN5 208 aa13.21□□□□□ -0.3
SYNE1-202ENST00000347037 XRN1Q8IZH2 1706 aaKnown RBP13.2□□□□□ -0.3
SYNE1-202ENST00000347037 OVOS2A0A0J9YW53 1432 aa13.2□□□□□ -0.3
SYNE1-202ENST00000347037 OVOS2Q6IE36 1432 aa13.2□□□□□ -0.3
SYNE1-202ENST00000347037 ANXA1P04083 346 aa13.2□□□□□ -0.3
SYNE1-202ENST00000347037 TAF7Q15545 349 aaPredicted RBP13.2□□□□□ -0.3
SYNE1-202ENST00000347037 ME3Q16798 604 aa13.2□□□□□ -0.3
SYNE1-202ENST00000347037 C16orf45Q96MC5 204 aaPredicted RBP13.2□□□□□ -0.3
SYNE1-202ENST00000347037 IGSF3O75054 1194 aa13.2□□□□□ -0.3
SYNE1-202ENST00000347037 LIG1P18858 919 aa13.2□□□□□ -0.3
SYNE1-202ENST00000347037 KRT85P78386 507 aa13.2□□□□□ -0.3
SYNE1-202ENST00000347037 TFIP11Q9UBB9 837 aaKnown RBP13.2□□□□□ -0.3
SYNE1-202ENST00000347037 ROBO2Q9HCK4 1378 aa13.2□□□□□ -0.3
SYNE1-202ENST00000347037 ZKSCAN1P17029 563 aaPredicted RBP13.2□□□□□ -0.3
SYNE1-202ENST00000347037 CCDC186Q7Z3E2 898 aa13.2□□□□□ -0.3
SYNE1-202ENST00000347037 IL17REQ8NFR9 667 aa13.2□□□□□ -0.3
SYNE1-202ENST00000347037 FAM200AQ8TCP9 573 aa13.2□□□□□ -0.3
SYNE1-202ENST00000347037 TNMDQ9H2S6 317 aa13.2□□□□□ -0.3
SYNE1-202ENST00000347037 PEAK1Q9H792 1746 aa13.19□□□□□ -0.3
SYNE1-202ENST00000347037 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.19□□□□□ -0.3
SYNE1-202ENST00000347037 TYRO3Q06418 890 aa13.19□□□□□ -0.3
SYNE1-202ENST00000347037 LRMPQ12912 555 aa13.19□□□□□ -0.3
SYNE1-202ENST00000347037 TTC6Q86TZ1 520 aa13.19□□□□□ -0.3
SYNE1-202ENST00000347037 TRIM5Q9C035 493 aa13.19□□□□□ -0.3
SYNE1-202ENST00000347037 TMEM2Q9UHN6 1383 aa13.19□□□□□ -0.3
SYNE1-202ENST00000347037 CEP170BQ9Y4F5 1589 aaPredicted RBP13.19□□□□□ -0.3
SYNE1-202ENST00000347037 GLRX3O76003 335 aaKnown RBP13.19□□□□□ -0.3
SYNE1-202ENST00000347037 VPS53Q5VIR6 699 aa13.19□□□□□ -0.3
SYNE1-202ENST00000347037 CDC37L1Q7L3B6 337 aa13.19□□□□□ -0.3
SYNE1-202ENST00000347037 USHBP1Q8N6Y0 703 aa13.19□□□□□ -0.3
SYNE1-202ENST00000347037 ZSCAN31Q96LW9 406 aaPredicted RBP13.19□□□□□ -0.3
SYNE1-202ENST00000347037 FLT4P35916 1363 aa13.19□□□□□ -0.3
SYNE1-202ENST00000347037 AKAP12Q02952 1782 aa13.19□□□□□ -0.3
SYNE1-202ENST00000347037 STK3Q13188 491 aa13.19□□□□□ -0.3
SYNE1-202ENST00000347037 ANO6Q4KMQ2 910 aa13.19□□□□□ -0.3
SYNE1-202ENST00000347037 CLASRPQ8N2M8 674 aaKnown RBP13.19□□□□□ -0.3
SYNE1-202ENST00000347037 SH2B1Q9NRF2 756 aaPredicted RBP13.19□□□□□ -0.3
SYNE1-202ENST00000347037 USP6P35125 1406 aa13.18□□□□□ -0.3
SYNE1-202ENST00000347037 PI4KAP2A4QPH2 592 aa13.18□□□□□ -0.3
SYNE1-202ENST00000347037 IFIT2P09913 472 aaKnown RBP13.18□□□□□ -0.3
SYNE1-202ENST00000347037 HDGFP51858 240 aaKnown RBP13.18□□□□□ -0.3
SYNE1-202ENST00000347037 POLA2Q14181 598 aa13.18□□□□□ -0.3
SYNE1-202ENST00000347037 PI4KAP1Q8N8J0 262 aa13.18□□□□□ -0.3
SYNE1-202ENST00000347037 DACT1Q9NYF0 836 aa13.18□□□□□ -0.3
SYNE1-202ENST00000347037 TUBGCP6Q96RT7 1819 aa13.18□□□□□ -0.3
SYNE1-202ENST00000347037 NRBP1Q9UHY1 535 aa13.18□□□□□ -0.3
SYNE1-202ENST00000347037 TPCN1Q9ULQ1 816 aa13.18□□□□□ -0.3
SYNE1-202ENST00000347037 MRVI1Q9Y6F6 885 aa13.18□□□□□ -0.3
SYNE1-202ENST00000347037 ZNF592Q92610 1267 aa13.17□□□□□ -0.3
SYNE1-202ENST00000347037 CHPF2Q9P2E5 772 aa13.17□□□□□ -0.3
SYNE1-202ENST00000347037 PA2G4Q9UQ80 394 aaKnown RBP13.17□□□□□ -0.3
SYNE1-202ENST00000347037 NLRP6P59044 892 aa13.17□□□□□ -0.3
SYNE1-202ENST00000347037 HSP90AB4PQ58FF6 505 aa13.17□□□□□ -0.3
SYNE1-202ENST00000347037 UTP14CQ5TAP6 766 aaKnown RBP13.17□□□□□ -0.3
SYNE1-202ENST00000347037 C14orf37Q86TY3 774 aa13.17□□□□□ -0.3
SYNE1-202ENST00000347037 RBM8AQ9Y5S9 174 aaKnown RBP13.17□□□□□ -0.3
SYNE1-202ENST00000347037 SBNO1A3KN83 1393 aa13.17□□□□□ -0.3
SYNE1-202ENST00000347037 IGSF1Q8N6C5 1336 aa13.17□□□□□ -0.3
SYNE1-202ENST00000347037 PLEKHG3A1L390 1219 aa13.17□□□□□ -0.3
SYNE1-202ENST00000347037 ST3GAL1Q11201 340 aa13.17□□□□□ -0.3
SYNE1-202ENST00000347037 BICD2Q8TD16 824 aa13.17□□□□□ -0.3
SYNE1-202ENST00000347037 SPATA32Q96LK8 384 aa13.17□□□□□ -0.3
SYNE1-202ENST00000347037 ZSWIM6Q9HCJ5 1215 aa13.17□□□□□ -0.3
SYNE1-202ENST00000347037 DIP2AQ14689 1571 aa13.16□□□□□ -0.3
SYNE1-202ENST00000347037 DNAAF4Q8WXU2 420 aa13.16□□□□□ -0.3
SYNE1-202ENST00000347037 GPATCH3Q96I76 525 aa13.16□□□□□ -0.3
SYNE1-202ENST00000347037 CBX8Q9HC52 389 aa13.16□□□□□ -0.3
SYNE1-202ENST00000347037 AACSQ86V21 672 aa13.16□□□□□ -0.3
SYNE1-202ENST00000347037 FAM227BQ96M60 508 aa13.16□□□□□ -0.3
SYNE1-202ENST00000347037 ECHDC1Q9NTX5 307 aa13.16□□□□□ -0.3
SYNE1-202ENST00000347037 HTATSF1O43719 755 aaKnown RBP13.15□□□□□ -0.3
SYNE1-202ENST00000347037 COL9A3Q14050 684 aaPredicted RBP13.15□□□□□ -0.3
SYNE1-202ENST00000347037 CREB3L3Q68CJ9 461 aa13.15□□□□□ -0.3
SYNE1-202ENST00000347037 SLC26A8Q96RN1 970 aa13.15□□□□□ -0.3
SYNE1-202ENST00000347037 C9orf78Q9NZ63 289 aaPredicted RBP13.15□□□□□ -0.3
SYNE1-202ENST00000347037 TNNT1P13805 278 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms