RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 LRRCC1Q9C099 1032 aa18.43■□□□□ 0.54
TPM3-208ENST00000341485 SRCIN1Q9C0H9 1055 aa18.43■□□□□ 0.54
TPM3-208ENST00000341485 FOXD4L1Q9NU39 408 aa18.43■□□□□ 0.54
TPM3-208ENST00000341485 KCPQ6ZWJ8 1503 aa18.43■□□□□ 0.54
TPM3-208ENST00000341485 IBTKQ9P2D0 1353 aaPredicted RBP18.43■□□□□ 0.54
TPM3-208ENST00000341485 ITGB4P16144 1822 aa18.42■□□□□ 0.54
TPM3-208ENST00000341485 AIMP1Q12904 312 aaKnown RBP18.42■□□□□ 0.54
TPM3-208ENST00000341485 PDIA6Q15084 440 aa18.42■□□□□ 0.54
TPM3-208ENST00000341485 PIGBQ92521 554 aa18.42■□□□□ 0.54
TPM3-208ENST00000341485 BCL9LQ86UU0 1499 aa18.42■□□□□ 0.54
TPM3-208ENST00000341485 GLI3P10071 1580 aa18.42■□□□□ 0.54
TPM3-208ENST00000341485 RAB3GAP1Q15042 981 aa18.42■□□□□ 0.54
TPM3-208ENST00000341485 FNBP4Q8N3X1 1017 aaPredicted RBP18.42■□□□□ 0.54
TPM3-208ENST00000341485 TNPO1Q92973 898 aaKnown RBP18.42■□□□□ 0.54
TPM3-208ENST00000341485 SYTL4Q96C24 671 aaPredicted RBP18.42■□□□□ 0.54
TPM3-208ENST00000341485 USP21Q9UK80 565 aa18.42■□□□□ 0.54
TPM3-208ENST00000341485 ADCY9O60503 1353 aa18.41■□□□□ 0.54
TPM3-208ENST00000341485 HSP90AA1P07900 732 aaKnown RBP18.41■□□□□ 0.54
TPM3-208ENST00000341485 UBTFL1P0CB47 393 aaPredicted RBP18.41■□□□□ 0.54
TPM3-208ENST00000341485 KSR2Q6VAB6 950 aa18.41■□□□□ 0.54
TPM3-208ENST00000341485 MAP3K2Q9Y2U5 619 aa18.41■□□□□ 0.54
TPM3-208ENST00000341485 TSHZ3Q63HK5 1081 aa18.4■□□□□ 0.54
TPM3-208ENST00000341485 DDX11L8A8MPP1 907 aa18.4■□□□□ 0.54
TPM3-208ENST00000341485 TRAK2O60296 914 aa18.4■□□□□ 0.54
TPM3-208ENST00000341485 FAM98CQ17RN3 349 aaKnown RBP18.4■□□□□ 0.54
TPM3-208ENST00000341485 ERC2O15083 957 aa18.39■□□□□ 0.53
TPM3-208ENST00000341485 REC8O95072 547 aa18.39■□□□□ 0.53
TPM3-208ENST00000341485 ASAP1Q9ULH1 1129 aa18.39■□□□□ 0.53
TPM3-208ENST00000341485 DOT1LQ8TEK3 1739 aa18.39■□□□□ 0.53
TPM3-208ENST00000341485 A0A0G2JS52 829 aa18.38■□□□□ 0.53
TPM3-208ENST00000341485 MX1P20591 662 aa18.38■□□□□ 0.53
TPM3-208ENST00000341485 PIP4K2AP48426 406 aaPredicted RBP18.38■□□□□ 0.53
TPM3-208ENST00000341485 BEND3Q5T5X7 828 aa18.38■□□□□ 0.53
TPM3-208ENST00000341485 XAGE3Q8WTP9 111 aa18.38■□□□□ 0.53
TPM3-208ENST00000341485 BCL9O00512 1426 aa18.38■□□□□ 0.53
TPM3-208ENST00000341485 RIC3Q7Z5B4 369 aa18.38■□□□□ 0.53
TPM3-208ENST00000341485 SSH3Q8TE77 659 aa18.38■□□□□ 0.53
TPM3-208ENST00000341485 ATG3Q9NT62 314 aa18.38■□□□□ 0.53
TPM3-208ENST00000341485 ERBB4Q15303 1308 aa18.38■□□□□ 0.53
TPM3-208ENST00000341485 KAT6BQ8WYB5 2073 aa18.38■□□□□ 0.53
TPM3-208ENST00000341485 COPS6Q7L5N1 327 aa18.37■□□□□ 0.53
TPM3-208ENST00000341485 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.37■□□□□ 0.53
TPM3-208ENST00000341485 PRIM1P49642 420 aaKnown RBP18.37■□□□□ 0.53
TPM3-208ENST00000341485 MARCH10Q8NA82 808 aaPredicted RBP18.37■□□□□ 0.53
TPM3-208ENST00000341485 STAP2Q9UGK3 403 aa18.37■□□□□ 0.53
TPM3-208ENST00000341485 POLA2Q14181 598 aa18.36■□□□□ 0.53
TPM3-208ENST00000341485 GZF1Q9H116 711 aaPredicted RBP18.36■□□□□ 0.53
TPM3-208ENST00000341485 ALDH1L1O75891 902 aa18.35■□□□□ 0.53
TPM3-208ENST00000341485 PPP1R42Q7Z4L9 355 aa18.35■□□□□ 0.53
TPM3-208ENST00000341485 VSIG10Q8N0Z9 540 aa18.35■□□□□ 0.53
TPM3-208ENST00000341485 ACSBG1Q96GR2 724 aa18.35■□□□□ 0.53
TPM3-208ENST00000341485 GBP4Q96PP9 640 aa18.35■□□□□ 0.53
TPM3-208ENST00000341485 TEX13AQ9BXU3 409 aaPredicted RBP18.35■□□□□ 0.53
TPM3-208ENST00000341485 NEXNQ0ZGT2 675 aa18.34■□□□□ 0.53
TPM3-208ENST00000341485 L1TD1Q5T7N2 865 aaKnown RBP18.34■□□□□ 0.53
TPM3-208ENST00000341485 SSFA2P28290 1259 aa18.34■□□□□ 0.53
TPM3-208ENST00000341485 ANKRD13DQ6ZTN6 518 aa18.34■□□□□ 0.53
TPM3-208ENST00000341485 LRP10Q7Z4F1 713 aa18.34■□□□□ 0.53
TPM3-208ENST00000341485 ESYT1Q9BSJ8 1104 aa18.34■□□□□ 0.53
TPM3-208ENST00000341485 AFF2P51816 1311 aa18.33■□□□□ 0.52
TPM3-208ENST00000341485 FSD2A1L4K1 749 aa18.33■□□□□ 0.52
TPM3-208ENST00000341485 A1BGP04217 495 aa18.33■□□□□ 0.52
TPM3-208ENST00000341485 NBPF7P0C2Y1 421 aaPredicted RBP18.33■□□□□ 0.52
TPM3-208ENST00000341485 LINS1Q8NG48 757 aa18.33■□□□□ 0.52
TPM3-208ENST00000341485 RTN4Q9NQC3 1192 aaKnown RBP18.33■□□□□ 0.52
TPM3-208ENST00000341485 AOX1Q06278 1338 aa18.32■□□□□ 0.52
TPM3-208ENST00000341485 IL1RAPL2Q9NP60 686 aa18.32■□□□□ 0.52
TPM3-208ENST00000341485 C9orf78Q9NZ63 289 aaPredicted RBP18.32■□□□□ 0.52
TPM3-208ENST00000341485 NBPF26B4DH59 902 aa18.32■□□□□ 0.52
TPM3-208ENST00000341485 RAB11FIP3O75154 756 aa18.32■□□□□ 0.52
TPM3-208ENST00000341485 CHMLP26374 656 aa18.32■□□□□ 0.52
TPM3-208ENST00000341485 CWF19L2Q2TBE0 894 aaKnown RBP18.32■□□□□ 0.52
TPM3-208ENST00000341485 NBPF14Q5TI25 921 aa18.32■□□□□ 0.52
TPM3-208ENST00000341485 NBPF10Q6P3W6 841 aaKnown RBP18.32■□□□□ 0.52
TPM3-208ENST00000341485 DNAJC10Q8IXB1 793 aa18.32■□□□□ 0.52
TPM3-208ENST00000341485 NBPF15Q8N660 670 aa18.32■□□□□ 0.52
TPM3-208ENST00000341485 ST18O60284 1047 aa18.31■□□□□ 0.52
TPM3-208ENST00000341485 SURF6O75683 361 aaKnown RBP18.31■□□□□ 0.52
TPM3-208ENST00000341485 STARD3NLO95772 234 aa18.31■□□□□ 0.52
TPM3-208ENST00000341485 RILPL2Q969X0 211 aa18.31■□□□□ 0.52
TPM3-208ENST00000341485 MYD88Q99836 296 aa18.31■□□□□ 0.52
TPM3-208ENST00000341485 METTL22Q9BUU2 404 aaPredicted RBP18.31■□□□□ 0.52
TPM3-208ENST00000341485 AK9Q5TCS8 1911 aa18.31■□□□□ 0.52
TPM3-208ENST00000341485 TRIM6-TRIM34B2RNG4 842 aa18.3■□□□□ 0.52
TPM3-208ENST00000341485 GOLGA6L3A6NEY3 463 aa18.3■□□□□ 0.52
TPM3-208ENST00000341485 SRGAP3O43295 1099 aa18.3■□□□□ 0.52
TPM3-208ENST00000341485 NUTM1Q86Y26 1132 aa18.3■□□□□ 0.52
TPM3-208ENST00000341485 PLBD2Q8NHP8 589 aa18.3■□□□□ 0.52
TPM3-208ENST00000341485 RHPN1Q8TCX5 695 aa18.3■□□□□ 0.52
TPM3-208ENST00000341485 HDAC5Q9UQL6 1122 aa18.3■□□□□ 0.52
TPM3-208ENST00000341485 CLEC17AQ6ZS10 378 aa18.29■□□□□ 0.52
TPM3-208ENST00000341485 GJD4Q96KN9 370 aaPredicted RBP18.29■□□□□ 0.52
TPM3-208ENST00000341485 ARFGEF2Q9Y6D5 1785 aa18.29■□□□□ 0.52
TPM3-208ENST00000341485 ZNF330Q9Y3S2 320 aaPredicted RBP18.28■□□□□ 0.52
TPM3-208ENST00000341485 IGKV5-2P06315 115 aa18.27■□□□□ 0.52
TPM3-208ENST00000341485 TRPC5Q9UL62 973 aaPredicted RBP18.27■□□□□ 0.52
TPM3-208ENST00000341485 NEURL1BA8MQ27 555 aa18.27■□□□□ 0.51
TPM3-208ENST00000341485 GRM8O00222 908 aa18.27■□□□□ 0.51
TPM3-208ENST00000341485 XRCC6P12956 609 aaKnown RBP eCLIP18.27■□□□□ 0.519e-13■□□□□ 8.6
TPM3-208ENST00000341485 PTMSP20962 102 aa18.27■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms