RNA–Protein interactions for RNA: ENST00000341060.3

TDP2-201, Transcript of tyrosyl-DNA phosphodiesterase 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TDP2, Length 2,120 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP2-201ENST00000341060 CLASRPQ8N2M8 674 aaKnown RBP17.62■□□□□ 0.41
TDP2-201ENST00000341060 ANP32BQ92688 251 aaKnown RBP17.62■□□□□ 0.41
TDP2-201ENST00000341060 DDX17Q92841 729 aaKnown RBP17.62■□□□□ 0.41
TDP2-201ENST00000341060 HYPKQ9NX55 129 aa17.62■□□□□ 0.41
TDP2-201ENST00000341060 AXIN2Q9Y2T1 843 aa17.62■□□□□ 0.41
TDP2-201ENST00000341060 PLEKHG5O94827 1062 aa17.61■□□□□ 0.41
TDP2-201ENST00000341060 MBD3O95983 291 aa17.61■□□□□ 0.41
TDP2-201ENST00000341060 ERC1Q8IUD2 1116 aa17.61■□□□□ 0.41
TDP2-201ENST00000341060 CHAMP1Q96JM3 812 aa17.61■□□□□ 0.41
TDP2-201ENST00000341060 SNX14Q9Y5W7 946 aa17.6■□□□□ 0.41
TDP2-201ENST00000341060 DCCP43146 1447 aa17.6■□□□□ 0.41
TDP2-201ENST00000341060 PRAMEF22A3QJZ6 481 aa17.6■□□□□ 0.41
TDP2-201ENST00000341060 CWF19L2Q2TBE0 894 aaKnown RBP17.6■□□□□ 0.41
TDP2-201ENST00000341060 FOXD4L5Q5VV16 416 aaPredicted RBP17.6■□□□□ 0.41
TDP2-201ENST00000341060 LMOD2Q6P5Q4 547 aa17.6■□□□□ 0.41
TDP2-201ENST00000341060 FOXD4L4Q8WXT5 416 aaPredicted RBP17.6■□□□□ 0.41
TDP2-201ENST00000341060 TTC14Q96N46 770 aa17.6■□□□□ 0.41
TDP2-201ENST00000341060 UTYO14607 1347 aa17.6■□□□□ 0.41
TDP2-201ENST00000341060 ERBB3P21860 1342 aa17.6■□□□□ 0.41
TDP2-201ENST00000341060 CWC27Q6UX04 472 aaKnown RBP17.59■□□□□ 0.41
TDP2-201ENST00000341060 KIAA1211Q6ZU35 1233 aa17.59■□□□□ 0.41
TDP2-201ENST00000341060 LINS1Q8NG48 757 aa17.59■□□□□ 0.41
TDP2-201ENST00000341060 TMEM63CQ9P1W3 806 aa17.59■□□□□ 0.41
TDP2-201ENST00000341060 GPATCH3Q96I76 525 aa17.59■□□□□ 0.41
TDP2-201ENST00000341060 ECHDC1Q9NTX5 307 aa17.59■□□□□ 0.41
TDP2-201ENST00000341060 RBM27Q9P2N5 1060 aaKnown RBP17.59■□□□□ 0.41
TDP2-201ENST00000341060 PRIM1P49642 420 aaKnown RBP17.58■□□□□ 0.4
TDP2-201ENST00000341060 DDX21Q9NR30 783 aaKnown RBP eCLIP17.58■□□□□ 0.4
TDP2-201ENST00000341060 ABCC6O95255 1503 aa17.58■□□□□ 0.4
TDP2-201ENST00000341060 AFDNP55196 1824 aaKnown RBP17.58■□□□□ 0.4
TDP2-201ENST00000341060 GRM8O00222 908 aa17.57■□□□□ 0.4
TDP2-201ENST00000341060 DDX58O95786 925 aaKnown RBP17.57■□□□□ 0.4
TDP2-201ENST00000341060 KRT28Q7Z3Y7 464 aa17.57■□□□□ 0.4
TDP2-201ENST00000341060 RUFY2Q8WXA3 655 aa17.57■□□□□ 0.4
TDP2-201ENST00000341060 NSFL1CQ9UNZ2 370 aaKnown RBP17.57■□□□□ 0.4
TDP2-201ENST00000341060 COL18A1P39060 1754 aa17.57■□□□□ 0.4
TDP2-201ENST00000341060 WDR33Q9C0J8 1336 aaKnown RBP17.57■□□□□ 0.4
TDP2-201ENST00000341060 LRSAM1Q6UWE0 723 aa17.57■□□□□ 0.4
TDP2-201ENST00000341060 RASEFQ8IZ41 740 aa17.57■□□□□ 0.4
TDP2-201ENST00000341060 RBSNQ9H1K0 784 aa17.57■□□□□ 0.4
TDP2-201ENST00000341060 DIAPH3Q9NSV4 1193 aa17.57■□□□□ 0.4
TDP2-201ENST00000341060 PA2G4Q9UQ80 394 aaKnown RBP17.57■□□□□ 0.4
TDP2-201ENST00000341060 IFIT2P09913 472 aaKnown RBP17.56■□□□□ 0.4
TDP2-201ENST00000341060 SPG7Q9UQ90 795 aa17.56■□□□□ 0.4
TDP2-201ENST00000341060 KDM6AO15550 1401 aaPredicted RBP17.56■□□□□ 0.4
TDP2-201ENST00000341060 RPAP1Q9BWH6 1393 aaPredicted RBP17.56■□□□□ 0.4
TDP2-201ENST00000341060 PDIA6Q15084 440 aa17.56■□□□□ 0.4
TDP2-201ENST00000341060 KAZALD1Q96I82 304 aa17.56■□□□□ 0.4
TDP2-201ENST00000341060 AK2P54819 239 aa17.55■□□□□ 0.4
TDP2-201ENST00000341060 SUCLG2Q96I99 432 aa17.55■□□□□ 0.4
TDP2-201ENST00000341060 MRC1P22897 1456 aa17.55■□□□□ 0.4
TDP2-201ENST00000341060 SYCE3A1L190 88 aa17.54■□□□□ 0.4
TDP2-201ENST00000341060 ZNF790Q6PG37 636 aa17.54■□□□□ 0.4
TDP2-201ENST00000341060 EVI5LQ96CN4 794 aa17.54■□□□□ 0.4
TDP2-201ENST00000341060 BICC1Q9H694 974 aaKnown RBP17.54■□□□□ 0.4
TDP2-201ENST00000341060 SLAIN2Q9P270 581 aa17.54■□□□□ 0.4
TDP2-201ENST00000341060 LIMCH1Q9UPQ0 1083 aa17.54■□□□□ 0.4
TDP2-201ENST00000341060 PKD1L3Q7Z443 1732 aa17.54■□□□□ 0.4
TDP2-201ENST00000341060 NPHP3Q7Z494 1330 aa17.53■□□□□ 0.4
TDP2-201ENST00000341060 ARFGEF2Q9Y6D5 1785 aa17.53■□□□□ 0.4
TDP2-201ENST00000341060 RUFY3Q7L099 469 aa17.53■□□□□ 0.4
TDP2-201ENST00000341060 AACSQ86V21 672 aa17.53■□□□□ 0.4
TDP2-201ENST00000341060 PDLIM2Q96JY6 352 aa17.53■□□□□ 0.4
TDP2-201ENST00000341060 SLC52A2Q9HAB3 445 aa17.53■□□□□ 0.4
TDP2-201ENST00000341060 SASH1O94885 1247 aa17.53■□□□□ 0.4
TDP2-201ENST00000341060 CASTP20810 708 aaKnown RBP17.53■□□□□ 0.4
TDP2-201ENST00000341060 RAPGEF4Q8WZA2 1011 aa17.53■□□□□ 0.4
TDP2-201ENST00000341060 KCNB2Q92953 911 aa17.53■□□□□ 0.4
TDP2-201ENST00000341060 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.53■□□□□ 0.4
TDP2-201ENST00000341060 IGKV5-2P06315 115 aa17.52■□□□□ 0.4
TDP2-201ENST00000341060 PTH1RQ03431 593 aa17.52■□□□□ 0.4
TDP2-201ENST00000341060 AIMP1Q12904 312 aaKnown RBP17.52■□□□□ 0.4
TDP2-201ENST00000341060 BRINP3Q76B58 766 aa17.52■□□□□ 0.4
TDP2-201ENST00000341060 PLEKHG2Q9H7P9 1386 aa17.52■□□□□ 0.4
TDP2-201ENST00000341060 LAMB4A4D0S4 1761 aa17.52■□□□□ 0.4
TDP2-201ENST00000341060 MEGF6O75095 1541 aa17.52■□□□□ 0.39
TDP2-201ENST00000341060 LARP1Q6PKG0 1096 aaKnown RBP17.51■□□□□ 0.39
TDP2-201ENST00000341060 ZSCAN30Q86W11 494 aa17.51■□□□□ 0.39
TDP2-201ENST00000341060 SYAP1Q96A49 352 aaPredicted RBP17.51■□□□□ 0.39
TDP2-201ENST00000341060 TM6SF1Q9BZW5 370 aa17.51■□□□□ 0.39
TDP2-201ENST00000341060 ZC3H6P61129 1189 aaKnown RBP17.51■□□□□ 0.39
TDP2-201ENST00000341060 G3BP1Q13283 466 aaKnown RBP eCLIP17.51■□□□□ 0.39
TDP2-201ENST00000341060 HS1BP3Q53T59 392 aa17.51■□□□□ 0.39
TDP2-201ENST00000341060 RIC3Q7Z5B4 369 aa17.51■□□□□ 0.39
TDP2-201ENST00000341060 TMEM87AQ8NBN3 555 aa17.51■□□□□ 0.39
TDP2-201ENST00000341060 EAF2Q96CJ1 260 aaPredicted RBP17.51■□□□□ 0.39
TDP2-201ENST00000341060 CCDC171Q6TFL3 1326 aa17.51■□□□□ 0.39
TDP2-201ENST00000341060 HIP1O00291 1037 aa17.5■□□□□ 0.39
TDP2-201ENST00000341060 SLC39A6Q13433 755 aa17.5■□□□□ 0.39
TDP2-201ENST00000341060 VPS53Q5VIR6 699 aa17.5■□□□□ 0.39
TDP2-201ENST00000341060 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.5■□□□□ 0.392e-7■■□□□ 13.3
TDP2-201ENST00000341060 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.5■□□□□ 0.39
TDP2-201ENST00000341060 NEURL1BA8MQ27 555 aa17.5■□□□□ 0.39
TDP2-201ENST00000341060 PHKG2P15735 406 aa17.5■□□□□ 0.39
TDP2-201ENST00000341060 NEXNQ0ZGT2 675 aa17.5■□□□□ 0.39
TDP2-201ENST00000341060 NECTIN1Q15223 517 aa17.5■□□□□ 0.39
TDP2-201ENST00000341060 ZSWIM6Q9HCJ5 1215 aa17.5■□□□□ 0.39
TDP2-201ENST00000341060 PARP4Q9UKK3 1724 aaKnown RBP17.5■□□□□ 0.39
TDP2-201ENST00000341060 ZSCAN22P10073 491 aaPredicted RBP17.49■□□□□ 0.39
TDP2-201ENST00000341060 ADCK5Q3MIX3 580 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms