RNA–Protein interactions for RNA: ENST00000340660.10

ATXN3-201, Transcript of ataxin 3, humanhuman

TSL 1 (best) BASIC

Gene ATXN3, Length 1,205 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-201ENST00000340660 SLC17A8Q8NDX2 589 aa16.63■□□□□ 0.25
ATXN3-201ENST00000340660 TBC1D12O60347 775 aa16.62■□□□□ 0.25
ATXN3-201ENST00000340660 CAPNS2Q96L46 248 aa16.62■□□□□ 0.25
ATXN3-201ENST00000340660 GNPATO15228 680 aa16.61■□□□□ 0.25
ATXN3-201ENST00000340660 TMF1P82094 1093 aa16.61■□□□□ 0.25
ATXN3-201ENST00000340660 GPR101Q96P66 508 aaPredicted RBP16.61■□□□□ 0.25
ATXN3-201ENST00000340660 ABT1Q9ULW3 272 aaKnown RBP16.61■□□□□ 0.25
ATXN3-201ENST00000340660 PBX2P40425 430 aa16.6■□□□□ 0.25
ATXN3-201ENST00000340660 NLGN1Q8N2Q7 840 aa16.6■□□□□ 0.25
ATXN3-201ENST00000340660 LARP6Q9BRS8 491 aaKnown RBP16.6■□□□□ 0.25
ATXN3-201ENST00000340660 LSM11P83369 360 aaKnown RBP eCLIP16.59■□□□□ 0.25
ATXN3-201ENST00000340660 CYP4F22Q6NT55 531 aa16.59■□□□□ 0.25
ATXN3-201ENST00000340660 BBXQ8WY36 941 aaPredicted RBP16.59■□□□□ 0.25
ATXN3-201ENST00000340660 NFKBIEO00221 500 aa16.58■□□□□ 0.24
ATXN3-201ENST00000340660 GRM1Q13255 1194 aa16.58■□□□□ 0.24
ATXN3-201ENST00000340660 MFSD10Q14728 455 aa16.58■□□□□ 0.24
ATXN3-201ENST00000340660 ZCRB1Q8TBF4 217 aaKnown RBP16.58■□□□□ 0.24
ATXN3-201ENST00000340660 PARP3Q9Y6F1 533 aa16.58■□□□□ 0.24
ATXN3-201ENST00000340660 CCDC88AQ3V6T2 1871 aa16.58■□□□□ 0.24
ATXN3-201ENST00000340660 DDNO94850 711 aaPredicted RBP16.57■□□□□ 0.24
ATXN3-201ENST00000340660 ANKRD13DQ6ZTN6 518 aa16.57■□□□□ 0.24
ATXN3-201ENST00000340660 DDX27Q96GQ7 796 aaKnown RBP16.57■□□□□ 0.24
ATXN3-201ENST00000340660 CABP1Q9NZU7 370 aa16.57■□□□□ 0.24
ATXN3-201ENST00000340660 TTC21BQ7Z4L5 1316 aa16.56■□□□□ 0.24
ATXN3-201ENST00000340660 CA12O43570 354 aa16.56■□□□□ 0.24
ATXN3-201ENST00000340660 AOC2O75106 756 aa16.56■□□□□ 0.24
ATXN3-201ENST00000340660 GYS1P13807 737 aa16.55■□□□□ 0.24
ATXN3-201ENST00000340660 ECE1P42892 770 aa16.55■□□□□ 0.24
ATXN3-201ENST00000340660 SRPK2P78362 688 aaKnown RBP16.55■□□□□ 0.24
ATXN3-201ENST00000340660 PAXIP1Q6ZW49 1069 aaPredicted RBP16.55■□□□□ 0.24
ATXN3-201ENST00000340660 TAF1DQ9H5J8 278 aaPredicted RBP16.55■□□□□ 0.24
ATXN3-201ENST00000340660 MEGF6O75095 1541 aa16.55■□□□□ 0.24
ATXN3-201ENST00000340660 MAP2P11137 1827 aaKnown RBP16.54■□□□□ 0.24
ATXN3-201ENST00000340660 MPRIPQ6WCQ1 1025 aa16.54■□□□□ 0.24
ATXN3-201ENST00000340660 COL6A3P12111 3177 aa16.54■□□□□ 0.24
ATXN3-201ENST00000340660 MKI67P46013 3256 aaKnown RBP16.53■□□□□ 0.24
ATXN3-201ENST00000340660 ITPK1Q13572 414 aa16.53■□□□□ 0.24
ATXN3-201ENST00000340660 ADAMTSL1Q8N6G6 1762 aa16.53■□□□□ 0.24
ATXN3-201ENST00000340660 SMARCC1Q92922 1105 aaPredicted RBP16.52■□□□□ 0.24
ATXN3-201ENST00000340660 FAM208AQ9UK61 1670 aaKnown RBP16.51■□□□□ 0.23
ATXN3-201ENST00000340660 MAP2K2P36507 400 aa16.51■□□□□ 0.23
ATXN3-201ENST00000340660 NBPF1Q3BBV0 1214 aa16.51■□□□□ 0.23
ATXN3-201ENST00000340660 ERFEQ4G0M1 354 aa16.51■□□□□ 0.23
ATXN3-201ENST00000340660 RNF166Q96A37 237 aaPredicted RBP16.51■□□□□ 0.23
ATXN3-201ENST00000340660 LTN1O94822 1766 aa16.51■□□□□ 0.23
ATXN3-201ENST00000340660 LOC102724428A0A0B4J2F2 783 aa16.5■□□□□ 0.23
ATXN3-201ENST00000340660 IQCA1LA6NCM1 817 aa16.5■□□□□ 0.23
ATXN3-201ENST00000340660 SIK1P57059 783 aa16.5■□□□□ 0.23
ATXN3-201ENST00000340660 EAPPQ56P03 285 aaPredicted RBP16.5■□□□□ 0.23
ATXN3-201ENST00000340660 TRAPPC3LQ5T215 181 aa16.5■□□□□ 0.23
ATXN3-201ENST00000340660 MAP1SQ66K74 1059 aaPredicted RBP16.5■□□□□ 0.23
ATXN3-201ENST00000340660 CNTROBQ8N137 903 aa16.5■□□□□ 0.23
ATXN3-201ENST00000340660 ARHGAP33O14559 1287 aa16.49■□□□□ 0.23
ATXN3-201ENST00000340660 DDR1Q08345 913 aa16.49■□□□□ 0.23
ATXN3-201ENST00000340660 PPP4R3BQ5MIZ7 849 aa16.48■□□□□ 0.23
ATXN3-201ENST00000340660 ARHGEF1Q92888 912 aaKnown RBP16.48■□□□□ 0.23
ATXN3-201ENST00000340660 DDX21Q9NR30 783 aaKnown RBP eCLIP16.47■□□□□ 0.23
ATXN3-201ENST00000340660 TTC21AQ8NDW8 1320 aa16.46■□□□□ 0.23
ATXN3-201ENST00000340660 FMR1Q06787 632 aaKnown RBP eCLIP16.46■□□□□ 0.23
ATXN3-201ENST00000340660 LTV1Q96GA3 475 aaPredicted RBP16.46■□□□□ 0.23
ATXN3-201ENST00000340660 SCN4AP35499 1836 aa16.46■□□□□ 0.23
ATXN3-201ENST00000340660 DICER1Q9UPY3 1922 aaKnown RBP16.46■□□□□ 0.23
ATXN3-201ENST00000340660 BRPF1P55201 1214 aaPredicted RBP16.45■□□□□ 0.22
ATXN3-201ENST00000340660 EMILIN3Q9NT22 766 aa16.45■□□□□ 0.22
ATXN3-201ENST00000340660 RTCBQ9Y3I0 505 aaKnown RBP16.45■□□□□ 0.22
ATXN3-201ENST00000340660 PIGBQ92521 554 aa16.44■□□□□ 0.22
ATXN3-201ENST00000340660 PSEN2P49810 448 aa16.43■□□□□ 0.22
ATXN3-201ENST00000340660 LOC105371045A0A1W2PR82 267 aa16.42■□□□□ 0.22
ATXN3-201ENST00000340660 CIAPIN1Q6FI81 312 aa16.42■□□□□ 0.22
ATXN3-201ENST00000340660 TLL2Q9Y6L7 1015 aa16.42■□□□□ 0.22
ATXN3-201ENST00000340660 ITGB4P16144 1822 aa16.42■□□□□ 0.22
ATXN3-201ENST00000340660 ATP6V1AP38606 617 aa16.41■□□□□ 0.22
ATXN3-201ENST00000340660 DMRTA1Q5VZB9 504 aa16.41■□□□□ 0.22
ATXN3-201ENST00000340660 TTLL6Q8N841 843 aa16.41■□□□□ 0.22
ATXN3-201ENST00000340660 HPS5Q9UPZ3 1129 aa16.41■□□□□ 0.22
ATXN3-201ENST00000340660 KDM2AQ9Y2K7 1162 aa16.41■□□□□ 0.22
ATXN3-201ENST00000340660 EVI5O60447 810 aa16.4■□□□□ 0.22
ATXN3-201ENST00000340660 RFC4P35249 363 aa16.4■□□□□ 0.22
ATXN3-201ENST00000340660 CST9Q5W186 159 aa16.4■□□□□ 0.22
ATXN3-201ENST00000340660 DLEC1Q9Y238 1755 aa16.4■□□□□ 0.22
ATXN3-201ENST00000340660 USP31Q70CQ4 1352 aa16.39■□□□□ 0.21
ATXN3-201ENST00000340660 EPHX2P34913 555 aa16.39■□□□□ 0.21
ATXN3-201ENST00000340660 ADGRD1Q6QNK2 874 aa16.39■□□□□ 0.21
ATXN3-201ENST00000340660 ZNF454Q8N9F8 522 aa16.39■□□□□ 0.21
ATXN3-201ENST00000340660 MPHOSPH9Q99550 1183 aa16.39■□□□□ 0.21
ATXN3-201ENST00000340660 TRIOBPQ9H2D6 2365 aa16.39■□□□□ 0.21
ATXN3-201ENST00000340660 POLRMTO00411 1230 aaKnown RBP16.38■□□□□ 0.21
ATXN3-201ENST00000340660 FOSBP53539 338 aa16.38■□□□□ 0.21
ATXN3-201ENST00000340660 SPRYD3Q8NCJ5 442 aa16.38■□□□□ 0.21
ATXN3-201ENST00000340660 IP6K1Q92551 441 aa16.38■□□□□ 0.21
ATXN3-201ENST00000340660 HACL1Q9UJ83 578 aa16.38■□□□□ 0.21
ATXN3-201ENST00000340660 RGPD2P0DJD1 1756 aa16.38■□□□□ 0.21
ATXN3-201ENST00000340660 SRP68Q9UHB9 627 aaKnown RBP16.37■□□□□ 0.21
ATXN3-201ENST00000340660 FER1L6Q2WGJ9 1857 aa16.36■□□□□ 0.21
ATXN3-201ENST00000340660 MAP3K9P80192 1104 aa16.36■□□□□ 0.21
ATXN3-201ENST00000340660 MPNDQ8N594 471 aa16.36■□□□□ 0.21
ATXN3-201ENST00000340660 ZIC5Q96T25 663 aa16.36■□□□□ 0.21
ATXN3-201ENST00000340660 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.36■□□□□ 0.21
ATXN3-201ENST00000340660 ASAP1Q9ULH1 1129 aa16.36■□□□□ 0.21
ATXN3-201ENST00000340660 CD163L1Q9NR16 1453 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms