RNA–Protein interactions for RNA: ENST00000334490.5

C9orf47-201, Transcript of chromosome 9 open reading frame 47, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene C9orf47, Length 4,829 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf47-201ENST00000334490 PDILTQ8N807 584 aa17.67■□□□□ 0.42
C9orf47-201ENST00000334490 VAMP4O75379 141 aa17.66■□□□□ 0.42
C9orf47-201ENST00000334490 BAG3O95817 575 aa17.66■□□□□ 0.42
C9orf47-201ENST00000334490 ATP2B3Q16720 1220 aa17.66■□□□□ 0.42
C9orf47-201ENST00000334490 FAM13BQ9NYF5 915 aa17.66■□□□□ 0.42
C9orf47-201ENST00000334490 SSBP05455 408 aaKnown RBP eCLIP17.66■□□□□ 0.42
C9orf47-201ENST00000334490 UQCRFS1P1P0C7P4 283 aa17.66■□□□□ 0.42
C9orf47-201ENST00000334490 NAP1L1P55209 391 aaKnown RBP17.66■□□□□ 0.42
C9orf47-201ENST00000334490 TTLL12Q14166 644 aaPredicted RBP17.66■□□□□ 0.42
C9orf47-201ENST00000334490 IQSEC3Q9UPP2 1182 aaPredicted RBP17.66■□□□□ 0.42
C9orf47-201ENST00000334490 SBNO1A3KN83 1393 aa17.66■□□□□ 0.42
C9orf47-201ENST00000334490 CCDC196A0A1B0GTZ2 297 aa17.65■□□□□ 0.42
C9orf47-201ENST00000334490 CT47A1Q5JQC4 288 aaPredicted RBP17.65■□□□□ 0.42
C9orf47-201ENST00000334490 MAGI3Q5TCQ9 1506 aa17.65■□□□□ 0.42
C9orf47-201ENST00000334490 SPTY2D1Q68D10 685 aaPredicted RBP17.65■□□□□ 0.42
C9orf47-201ENST00000334490 TRIM5Q9C035 493 aa17.65■□□□□ 0.42
C9orf47-201ENST00000334490 SEC63Q9UGP8 760 aaKnown RBP17.65■□□□□ 0.42
C9orf47-201ENST00000334490 FERMT3Q86UX7 667 aa17.65■□□□□ 0.42
C9orf47-201ENST00000334490 GOLGA6L1Q8N7Z2 621 aa17.65■□□□□ 0.42
C9orf47-201ENST00000334490 SPATA32Q96LK8 384 aa17.65■□□□□ 0.42
C9orf47-201ENST00000334490 CFAP45Q9UL16 551 aa17.65■□□□□ 0.42
C9orf47-201ENST00000334490 PIK3C2GO75747 1445 aa17.65■□□□□ 0.42
C9orf47-201ENST00000334490 PLEKHG3A1L390 1219 aa17.64■□□□□ 0.42
C9orf47-201ENST00000334490 CWF19L2Q2TBE0 894 aaKnown RBP17.64■□□□□ 0.42
C9orf47-201ENST00000334490 CCDC70Q6NSX1 233 aa17.64■□□□□ 0.42
C9orf47-201ENST00000334490 IFIT3O14879 490 aaKnown RBP17.64■□□□□ 0.41
C9orf47-201ENST00000334490 HMGB1P09429 215 aaKnown RBP17.64■□□□□ 0.41
C9orf47-201ENST00000334490 COL17A1Q9UMD9 1497 aaPredicted RBP17.64■□□□□ 0.41
C9orf47-201ENST00000334490 IGHDP01880 384 aa17.64■□□□□ 0.41
C9orf47-201ENST00000334490 CCDC96Q2M329 555 aa17.64■□□□□ 0.41
C9orf47-201ENST00000334490 IL13P35225 146 aa17.63■□□□□ 0.41
C9orf47-201ENST00000334490 MAGEC2Q9UBF1 373 aaPredicted RBP17.63■□□□□ 0.41
C9orf47-201ENST00000334490 IL15P40933 162 aaPredicted RBP17.63■□□□□ 0.41
C9orf47-201ENST00000334490 ANKRD44Q8N8A2 993 aa17.63■□□□□ 0.41
C9orf47-201ENST00000334490 NYXQ9GZU5 481 aa17.63■□□□□ 0.41
C9orf47-201ENST00000334490 NASPP49321 788 aaPredicted RBP17.63■□□□□ 0.41
C9orf47-201ENST00000334490 BRPF1P55201 1214 aaPredicted RBP17.63■□□□□ 0.41
C9orf47-201ENST00000334490 FAM98CQ17RN3 349 aaKnown RBP17.63■□□□□ 0.41
C9orf47-201ENST00000334490 FILIP1LQ4L180 1135 aa17.63■□□□□ 0.41
C9orf47-201ENST00000334490 WWC2Q6AWC2 1192 aa17.63■□□□□ 0.41
C9orf47-201ENST00000334490 SLC12A7Q9Y666 1083 aa17.63■□□□□ 0.41
C9orf47-201ENST00000334490 ARHGEF10O15013 1369 aa17.63■□□□□ 0.41
C9orf47-201ENST00000334490 GNPATO15228 680 aa17.62■□□□□ 0.41
C9orf47-201ENST00000334490 ATP8B2P98198 1209 aa17.62■□□□□ 0.41
C9orf47-201ENST00000334490 BMP2KLQ5H9B9 411 aa17.62■□□□□ 0.41
C9orf47-201ENST00000334490 NBPF14Q5TI25 921 aa17.62■□□□□ 0.41
C9orf47-201ENST00000334490 ZNF790Q6PG37 636 aa17.62■□□□□ 0.41
C9orf47-201ENST00000334490 MBD5Q9P267 1494 aa17.62■□□□□ 0.41
C9orf47-201ENST00000334490 PLEKHH1Q9ULM0 1364 aa17.62■□□□□ 0.41
C9orf47-201ENST00000334490 SMC2O95347 1197 aa17.62■□□□□ 0.41
C9orf47-201ENST00000334490 HAND2P61296 217 aa17.62■□□□□ 0.41
C9orf47-201ENST00000334490 WWC3Q9ULE0 1092 aa17.62■□□□□ 0.41
C9orf47-201ENST00000334490 ABCA8O94911 1581 aa17.62■□□□□ 0.41
C9orf47-201ENST00000334490 TNMDQ9H2S6 317 aa17.61■□□□□ 0.41
C9orf47-201ENST00000334490 DDX21Q9NR30 783 aaKnown RBP eCLIP17.61■□□□□ 0.41
C9orf47-201ENST00000334490 BMP2KQ9NSY1 1161 aaPredicted RBP17.61■□□□□ 0.41
C9orf47-201ENST00000334490 IRS4O14654 1257 aaPredicted RBP17.61■□□□□ 0.41
C9orf47-201ENST00000334490 PCDHB15Q9Y5E8 787 aa17.61■□□□□ 0.41
C9orf47-201ENST00000334490 PDIA4P13667 645 aaKnown RBP17.61■□□□□ 0.41
C9orf47-201ENST00000334490 PA2G4Q9UQ80 394 aaKnown RBP17.61■□□□□ 0.41
C9orf47-201ENST00000334490 PHAXQ9H814 394 aaKnown RBP17.61■□□□□ 0.41
C9orf47-201ENST00000334490 WDHD1O75717 1129 aaPredicted RBP17.6■□□□□ 0.41
C9orf47-201ENST00000334490 TSPY26PQ9H489 355 aa17.6■□□□□ 0.41
C9orf47-201ENST00000334490 CIZ1Q9ULV3 898 aaPredicted RBP17.6■□□□□ 0.41
C9orf47-201ENST00000334490 HDAC1Q13547 482 aaPredicted RBP17.6■□□□□ 0.41
C9orf47-201ENST00000334490 STIM1Q13586 685 aa17.6■□□□□ 0.41
C9orf47-201ENST00000334490 TBC1D9Q6ZT07 1266 aa17.6■□□□□ 0.41
C9orf47-201ENST00000334490 CCNL1Q9UK58 526 aaPredicted RBP17.6■□□□□ 0.41
C9orf47-201ENST00000334490 PARP3Q9Y6F1 533 aa17.6■□□□□ 0.41
C9orf47-201ENST00000334490 SLC4A8Q2Y0W8 1093 aa17.6■□□□□ 0.41
C9orf47-201ENST00000334490 NSFL1CQ9UNZ2 370 aaKnown RBP17.6■□□□□ 0.41
C9orf47-201ENST00000334490 MRE11P49959 708 aa17.59■□□□□ 0.41
C9orf47-201ENST00000334490 TTC22Q5TAA0 569 aa17.59■□□□□ 0.41
C9orf47-201ENST00000334490 WDR78Q5VTH9 848 aa17.59■□□□□ 0.41
C9orf47-201ENST00000334490 FEZ1Q99689 392 aa17.59■□□□□ 0.41
C9orf47-201ENST00000334490 SH2B1Q9NRF2 756 aaPredicted RBP17.59■□□□□ 0.41
C9orf47-201ENST00000334490 ODF2Q5BJF6 829 aa17.59■□□□□ 0.41
C9orf47-201ENST00000334490 TRAPPC3LQ5T215 181 aa17.59■□□□□ 0.41
C9orf47-201ENST00000334490 TSPY2A6NKD2 308 aa17.59■□□□□ 0.41
C9orf47-201ENST00000334490 PRIM1P49642 420 aaKnown RBP17.59■□□□□ 0.41
C9orf47-201ENST00000334490 LGR6Q9HBX8 967 aa17.59■□□□□ 0.41
C9orf47-201ENST00000334490 HLA-DOAP06340 250 aa17.59■□□□□ 0.41
C9orf47-201ENST00000334490 PDE4BQ07343 736 aa17.59■□□□□ 0.41
C9orf47-201ENST00000334490 GOLGA8BA8MQT2 603 aa17.58■□□□□ 0.41
C9orf47-201ENST00000334490 HELBQ8NG08 1087 aaPredicted RBP17.58■□□□□ 0.41
C9orf47-201ENST00000334490 F8W031 263 aaPredicted RBP17.58■□□□□ 0.4
C9orf47-201ENST00000334490 CCDC192P0DO97 292 aa17.58■□□□□ 0.4
C9orf47-201ENST00000334490 CATIPQ7Z7H3 387 aa17.58■□□□□ 0.4
C9orf47-201ENST00000334490 C8orf76Q96K31 380 aa17.58■□□□□ 0.4
C9orf47-201ENST00000334490 GOLGA8AA7E2F4 631 aa17.58■□□□□ 0.4
C9orf47-201ENST00000334490 CYP7A1P22680 504 aa17.58■□□□□ 0.4
C9orf47-201ENST00000334490 POLD1P28340 1107 aa17.58■□□□□ 0.4
C9orf47-201ENST00000334490 ZFYVE27Q5T4F4 411 aa17.58■□□□□ 0.4
C9orf47-201ENST00000334490 PAXIP1Q6ZW49 1069 aaPredicted RBP17.58■□□□□ 0.4
C9orf47-201ENST00000334490 CRNKL1Q9BZJ0 848 aaKnown RBP17.58■□□□□ 0.4
C9orf47-201ENST00000334490 ZC3H12CQ9C0D7 883 aaKnown RBP17.58■□□□□ 0.4
C9orf47-201ENST00000334490 USP21Q9UK80 565 aa17.58■□□□□ 0.4
C9orf47-201ENST00000334490 LIMCH1Q9UPQ0 1083 aa17.58■□□□□ 0.4
C9orf47-201ENST00000334490 TNNQ9UQP3 1299 aa17.58■□□□□ 0.4
C9orf47-201ENST00000334490 MYO1BO43795 1136 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms