RNA–Protein interactions for RNA: ENST00000333617.8

LSAMP-201, Transcript of limbic system associated membrane protein, humanhuman

TSL 2

Gene LSAMP, Length 1,561 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSAMP-201ENST00000333617 PDZRN3Q9UPQ7 1066 aa11.01□□□□□ -0.65
LSAMP-201ENST00000333617 USP19O94966 1318 aa11.01□□□□□ -0.65
LSAMP-201ENST00000333617 EN1Q05925 392 aaPredicted RBP11□□□□□ -0.65
LSAMP-201ENST00000333617 KRT24Q2M2I5 525 aa11□□□□□ -0.65
LSAMP-201ENST00000333617 C8orf34Q49A92 452 aa11□□□□□ -0.65
LSAMP-201ENST00000333617 USHBP1Q8N6Y0 703 aa11□□□□□ -0.65
LSAMP-201ENST00000333617 MSH6P52701 1360 aa11□□□□□ -0.65
LSAMP-201ENST00000333617 MAP3K7O43318 606 aa10.99□□□□□ -0.65
LSAMP-201ENST00000333617 ONECUT3O60422 494 aaPredicted RBP10.99□□□□□ -0.65
LSAMP-201ENST00000333617 NBPF6Q5VWK0 638 aa10.99□□□□□ -0.65
LSAMP-201ENST00000333617 ARHGEF25Q86VW2 580 aa10.99□□□□□ -0.65
LSAMP-201ENST00000333617 WNT2BQ93097 391 aa10.99□□□□□ -0.65
LSAMP-201ENST00000333617 NBPF4Q96M43 638 aa10.99□□□□□ -0.65
LSAMP-201ENST00000333617 MIS18AQ9NYP9 233 aa10.99□□□□□ -0.65
LSAMP-201ENST00000333617 SIPA1L3O60292 1781 aaPredicted RBP10.99□□□□□ -0.65
LSAMP-201ENST00000333617 MED1Q15648 1581 aaPredicted RBP10.99□□□□□ -0.65
LSAMP-201ENST00000333617 ZBTB7BO15156 539 aaPredicted RBP10.99□□□□□ -0.65
LSAMP-201ENST00000333617 HSPA2P54652 639 aa10.99□□□□□ -0.65
LSAMP-201ENST00000333617 ANP32EQ9BTT0 268 aa10.99□□□□□ -0.65
LSAMP-201ENST00000333617 COL18A1P39060 1754 aa10.98□□□□□ -0.65
LSAMP-201ENST00000333617 BABAM1Q9NWV8 329 aa10.98□□□□□ -0.65
LSAMP-201ENST00000333617 NOP58Q9Y2X3 529 aaKnown RBP10.98□□□□□ -0.65
LSAMP-201ENST00000333617 PTPRCP08575 1304 aa10.98□□□□□ -0.65
LSAMP-201ENST00000333617 NCAPD2Q15021 1401 aa10.97□□□□□ -0.65
LSAMP-201ENST00000333617 LMTK3Q96Q04 1460 aa10.97□□□□□ -0.65
LSAMP-201ENST00000333617 MYT1Q01538 1121 aa10.97□□□□□ -0.65
LSAMP-201ENST00000333617 THSD4Q6ZMP0 1018 aa10.97□□□□□ -0.65
LSAMP-201ENST00000333617 SMC5Q8IY18 1101 aa10.97□□□□□ -0.65
LSAMP-201ENST00000333617 IL17REQ8NFR9 667 aa10.97□□□□□ -0.65
LSAMP-201ENST00000333617 KIAA1468Q9P260 1216 aa10.97□□□□□ -0.65
LSAMP-201ENST00000333617 SCN11AQ9UI33 1791 aa10.97□□□□□ -0.65
LSAMP-201ENST00000333617 RGS12O14924 1447 aa10.97□□□□□ -0.65
LSAMP-201ENST00000333617 GRXCR2A6NFK2 248 aa10.96□□□□□ -0.65
LSAMP-201ENST00000333617 PTPN5P54829 565 aa10.96□□□□□ -0.65
LSAMP-201ENST00000333617 TAF7Q15545 349 aaPredicted RBP10.96□□□□□ -0.65
LSAMP-201ENST00000333617 LAPTM4BQ86VI4 370 aa10.96□□□□□ -0.65
LSAMP-201ENST00000333617 ANKRD24Q8TF21 1146 aa10.96□□□□□ -0.65
LSAMP-201ENST00000333617 SOS1Q07889 1333 aaPredicted RBP10.96□□□□□ -0.65
LSAMP-201ENST00000333617 TRIM6-TRIM34B2RNG4 842 aa10.95□□□□□ -0.66
LSAMP-201ENST00000333617 PLEKHO1Q53GL0 409 aaPredicted RBP10.95□□□□□ -0.66
LSAMP-201ENST00000333617 INTS3Q68E01 1043 aaKnown RBP10.95□□□□□ -0.66
LSAMP-201ENST00000333617 LRRC59Q96AG4 307 aaKnown RBP10.95□□□□□ -0.66
LSAMP-201ENST00000333617 NPHP3Q7Z494 1330 aa10.95□□□□□ -0.66
LSAMP-201ENST00000333617 TSR1Q2NL82 804 aaKnown RBP10.94□□□□□ -0.66
LSAMP-201ENST00000333617 AMOTQ4VCS5 1084 aa10.94□□□□□ -0.66
LSAMP-201ENST00000333617 DDRGK1Q96HY6 314 aa10.94□□□□□ -0.66
LSAMP-201ENST00000333617 C1orf115Q9H7X2 142 aa10.94□□□□□ -0.66
LSAMP-201ENST00000333617 CEMIPQ8WUJ3 1361 aa10.94□□□□□ -0.66
LSAMP-201ENST00000333617 ADAMTS7Q9UKP4 1686 aa10.94□□□□□ -0.66
LSAMP-201ENST00000333617 ABCC6O95255 1503 aa10.94□□□□□ -0.66
LSAMP-201ENST00000333617 PXDNQ92626 1479 aa10.94□□□□□ -0.66
LSAMP-201ENST00000333617 TNS3Q68CZ2 1445 aa10.94□□□□□ -0.66
LSAMP-201ENST00000333617 AKAP4Q5JQC9 854 aa10.94□□□□□ -0.66
LSAMP-201ENST00000333617 ANKK1Q8NFD2 765 aa10.94□□□□□ -0.66
LSAMP-201ENST00000333617 STK31Q9BXU1 1019 aa10.94□□□□□ -0.66
LSAMP-201ENST00000333617 ZC3H6P61129 1189 aaKnown RBP10.93□□□□□ -0.66
LSAMP-201ENST00000333617 CCDC30Q5VVM6 783 aa10.93□□□□□ -0.66
LSAMP-201ENST00000333617 ZNF530Q6P9A1 599 aaPredicted RBP10.93□□□□□ -0.66
LSAMP-201ENST00000333617 DDX17Q92841 729 aaKnown RBP10.93□□□□□ -0.66
LSAMP-201ENST00000333617 GCC1Q96CN9 775 aa10.93□□□□□ -0.66
LSAMP-201ENST00000333617 OVOS2A0A0G2JMS6 1433 aa10.92□□□□□ -0.66
LSAMP-201ENST00000333617 NUCB1Q02818 461 aa10.92□□□□□ -0.66
LSAMP-201ENST00000333617 ARHGEF1Q92888 912 aaKnown RBP10.92□□□□□ -0.66
LSAMP-201ENST00000333617 ABCA3Q99758 1704 aa10.91□□□□□ -0.66
LSAMP-201ENST00000333617 C1orf141Q5JVX7 400 aa10.91□□□□□ -0.66
LSAMP-201ENST00000333617 PKD1L3Q7Z443 1732 aa10.91□□□□□ -0.66
LSAMP-201ENST00000333617 OSBPP22059 807 aa10.9□□□□□ -0.66
LSAMP-201ENST00000333617 CCT4P50991 539 aaKnown RBP10.9□□□□□ -0.66
LSAMP-201ENST00000333617 TEFQ10587 303 aa10.9□□□□□ -0.66
LSAMP-201ENST00000333617 G2E3Q7L622 706 aa10.9□□□□□ -0.66
LSAMP-201ENST00000333617 CHD1LQ86WJ1 897 aa10.9□□□□□ -0.66
LSAMP-201ENST00000333617 SIRT2Q8IXJ6 389 aa10.9□□□□□ -0.66
LSAMP-201ENST00000333617 CERKQ8TCT0 537 aa10.9□□□□□ -0.66
LSAMP-201ENST00000333617 LGR6Q9HBX8 967 aa10.9□□□□□ -0.66
LSAMP-201ENST00000333617 SPATA31A3Q5VYP0 1347 aa10.9□□□□□ -0.66
LSAMP-201ENST00000333617 PRIM1P49642 420 aaKnown RBP10.9□□□□□ -0.67
LSAMP-201ENST00000333617 ANKRD45Q5TZF3 282 aa10.9□□□□□ -0.67
LSAMP-201ENST00000333617 PACS2Q86VP3 889 aa10.9□□□□□ -0.67
LSAMP-201ENST00000333617 PARP4Q9UKK3 1724 aaKnown RBP10.89□□□□□ -0.67
LSAMP-201ENST00000333617 FLIIQ13045 1269 aa10.89□□□□□ -0.67
LSAMP-201ENST00000333617 MPRIPQ6WCQ1 1025 aa10.89□□□□□ -0.67
LSAMP-201ENST00000333617 CHMP4AQ9BY43 222 aa10.89□□□□□ -0.67
LSAMP-201ENST00000333617 LNPKQ9C0E8 428 aa10.89□□□□□ -0.67
LSAMP-201ENST00000333617 SEPT9Q9UHD8 586 aaPredicted RBP10.89□□□□□ -0.67
LSAMP-201ENST00000333617 ATP10DQ9P241 1426 aa10.89□□□□□ -0.67
LSAMP-201ENST00000333617 PXDNLA1KZ92 1463 aa10.88□□□□□ -0.67
LSAMP-201ENST00000333617 NHSL1Q5SYE7 1610 aa10.88□□□□□ -0.67
LSAMP-201ENST00000333617 BTBD11A6QL63 1104 aa10.88□□□□□ -0.67
LSAMP-201ENST00000333617 RNMTO43148 476 aaKnown RBP10.88□□□□□ -0.67
LSAMP-201ENST00000333617 PLCB2Q00722 1185 aa10.88□□□□□ -0.67
LSAMP-201ENST00000333617 FKBP5Q13451 457 aaPredicted RBP10.88□□□□□ -0.67
LSAMP-201ENST00000333617 HDGFL1Q5TGJ6 251 aa10.88□□□□□ -0.67
LSAMP-201ENST00000333617 SLC4A10Q6U841 1118 aa10.88□□□□□ -0.67
LSAMP-201ENST00000333617 BRINP3Q76B58 766 aa10.88□□□□□ -0.67
LSAMP-201ENST00000333617 RPAP2Q8IXW5 612 aaPredicted RBP10.88□□□□□ -0.67
LSAMP-201ENST00000333617 ANKRD44Q8N8A2 993 aa10.88□□□□□ -0.67
LSAMP-201ENST00000333617 KCNV2Q8TDN2 545 aa10.88□□□□□ -0.67
LSAMP-201ENST00000333617 CABLES1Q8TDN4 633 aa10.88□□□□□ -0.67
LSAMP-201ENST00000333617 NECTIN2Q92692 538 aa10.88□□□□□ -0.67
LSAMP-201ENST00000333617 ZFRQ96KR1 1074 aaKnown RBP10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms