RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 RHPN1Q8TCX5 695 aa20.93■□□□□ 0.94
DDX41-201ENST00000330503 WNK3Q9BYP7 1800 aa20.93■□□□□ 0.94
DDX41-201ENST00000330503 TTLL7Q6ZT98 887 aa20.93■□□□□ 0.94
DDX41-201ENST00000330503 BICC1Q9H694 974 aaKnown RBP20.93■□□□□ 0.94
DDX41-201ENST00000330503 IL1RAPL2Q9NP60 686 aa20.93■□□□□ 0.94
DDX41-201ENST00000330503 UBAP1LF5GYI3 381 aa20.92■□□□□ 0.94
DDX41-201ENST00000330503 ARFGEF2Q9Y6D5 1785 aa20.92■□□□□ 0.94
DDX41-201ENST00000330503 MX1P20591 662 aa20.92■□□□□ 0.94
DDX41-201ENST00000330503 RBM25P49756 843 aaKnown RBP20.92■□□□□ 0.94
DDX41-201ENST00000330503 TSHZ3Q63HK5 1081 aa20.92■□□□□ 0.94
DDX41-201ENST00000330503 THRAP3Q9Y2W1 955 aaKnown RBP20.91■□□□□ 0.94
DDX41-201ENST00000330503 BCL9O00512 1426 aa20.9■□□□□ 0.94
DDX41-201ENST00000330503 ATP5J2-PTCD1G3V325 749 aa20.9■□□□□ 0.94
DDX41-201ENST00000330503 VSIG10Q8N0Z9 540 aa20.9■□□□□ 0.94
DDX41-201ENST00000330503 KIF1BPQ96EK5 621 aa20.9■□□□□ 0.94
DDX41-201ENST00000330503 CDCA7Q9BWT1 371 aaPredicted RBP20.9■□□□□ 0.94
DDX41-201ENST00000330503 DAXXQ9UER7 740 aaPredicted RBP20.9■□□□□ 0.94
DDX41-201ENST00000330503 HSP90AB4PQ58FF6 505 aa20.9■□□□□ 0.94
DDX41-201ENST00000330503 EPHA10Q5JZY3 1008 aa20.9■□□□□ 0.94
DDX41-201ENST00000330503 LRP6O75581 1613 aa20.9■□□□□ 0.94
DDX41-201ENST00000330503 SPATA31A5Q5VU36 1347 aa20.89■□□□□ 0.94
DDX41-201ENST00000330503 SPATA31A7Q8IWB4 1347 aa20.89■□□□□ 0.94
DDX41-201ENST00000330503 DNAJC10Q8IXB1 793 aa20.89■□□□□ 0.94
DDX41-201ENST00000330503 JARID2Q92833 1246 aaPredicted RBP20.89■□□□□ 0.94
DDX41-201ENST00000330503 PA2G4Q9UQ80 394 aaKnown RBP20.89■□□□□ 0.94
DDX41-201ENST00000330503 SLIT2O94813 1529 aa20.89■□□□□ 0.93
DDX41-201ENST00000330503 NUTM1Q86Y26 1132 aa20.89■□□□□ 0.93
DDX41-201ENST00000330503 TEX13AQ9BXU3 409 aaPredicted RBP20.88■□□□□ 0.93
DDX41-201ENST00000330503 AFDNP55196 1824 aaKnown RBP20.88■□□□□ 0.93
DDX41-201ENST00000330503 TUBGCP6Q96RT7 1819 aa20.88■□□□□ 0.93
DDX41-201ENST00000330503 SLC4A9Q96Q91 983 aa20.87■□□□□ 0.93
DDX41-201ENST00000330503 CASP7P55210 303 aa20.87■□□□□ 0.93
DDX41-201ENST00000330503 RBM42Q9BTD8 480 aaKnown RBP20.87■□□□□ 0.93
DDX41-201ENST00000330503 NUP188Q5SRE5 1749 aa20.87■□□□□ 0.93
DDX41-201ENST00000330503 PRIM1P49642 420 aaKnown RBP20.86■□□□□ 0.93
DDX41-201ENST00000330503 BECN1Q14457 450 aa20.86■□□□□ 0.93
DDX41-201ENST00000330503 AOX1Q06278 1338 aa20.86■□□□□ 0.93
DDX41-201ENST00000330503 NWD2Q9ULI1 1742 aa20.86■□□□□ 0.93
DDX41-201ENST00000330503 DDB1Q16531 1140 aa20.86■□□□□ 0.93
DDX41-201ENST00000330503 TBC1D2Q9BYX2 928 aa20.86■□□□□ 0.93
DDX41-201ENST00000330503 A0A087WZG4 1122 aa20.85■□□□□ 0.93
DDX41-201ENST00000330503 KIF2CQ99661 725 aa20.85■□□□□ 0.93
DDX41-201ENST00000330503 COL15A1P39059 1388 aa20.85■□□□□ 0.93
DDX41-201ENST00000330503 OS9Q13438 667 aaPredicted RBP20.84■□□□□ 0.93
DDX41-201ENST00000330503 UBE3BQ7Z3V4 1068 aa20.84■□□□□ 0.93
DDX41-201ENST00000330503 MARCH10Q8NA82 808 aaPredicted RBP20.84■□□□□ 0.93
DDX41-201ENST00000330503 ZBTB3Q9H5J0 574 aa20.84■□□□□ 0.93
DDX41-201ENST00000330503 H7C1W4 665 aa20.84■□□□□ 0.93
DDX41-201ENST00000330503 BARGINQ6ZT62 677 aa20.84■□□□□ 0.93
DDX41-201ENST00000330503 SYTL4Q96C24 671 aaPredicted RBP20.83■□□□□ 0.93
DDX41-201ENST00000330503 KAT6BQ8WYB5 2073 aa20.83■□□□□ 0.92
DDX41-201ENST00000330503 SASH1O94885 1247 aa20.83■□□□□ 0.92
DDX41-201ENST00000330503 STARD3NLO95772 234 aa20.83■□□□□ 0.92
DDX41-201ENST00000330503 RABL6Q3YEC7 729 aaPredicted RBP20.83■□□□□ 0.92
DDX41-201ENST00000330503 PI4K2BQ8TCG2 481 aa20.83■□□□□ 0.92
DDX41-201ENST00000330503 USP26Q9BXU7 913 aa20.83■□□□□ 0.92
DDX41-201ENST00000330503 EIF5BO60841 1220 aaKnown RBP20.82■□□□□ 0.92
DDX41-201ENST00000330503 ERC1Q8IUD2 1116 aa20.82■□□□□ 0.92
DDX41-201ENST00000330503 UNC5CLQ8IV45 518 aa20.82■□□□□ 0.92
DDX41-201ENST00000330503 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.82■□□□□ 0.92
DDX41-201ENST00000330503 CYP19A1P11511 503 aaPredicted RBP20.81■□□□□ 0.92
DDX41-201ENST00000330503 RFX5P48382 616 aaPredicted RBP20.81■□□□□ 0.92
DDX41-201ENST00000330503 KLHDC4Q8TBB5 520 aa20.81■□□□□ 0.92
DDX41-201ENST00000330503 CWC25Q9NXE8 425 aaPredicted RBP20.81■□□□□ 0.92
DDX41-201ENST00000330503 CCDC9Q9Y3X0 531 aaKnown RBP20.81■□□□□ 0.92
DDX41-201ENST00000330503 USP42Q9H9J4 1324 aaKnown RBP20.81■□□□□ 0.92
DDX41-201ENST00000330503 G3BP1Q13283 466 aaKnown RBP eCLIP20.81■□□□□ 0.92
DDX41-201ENST00000330503 CASC1Q6TDU7 716 aa20.81■□□□□ 0.92
DDX41-201ENST00000330503 DOT1LQ8TEK3 1739 aa20.81■□□□□ 0.92
DDX41-201ENST00000330503 JCADQ9P266 1359 aa20.8■□□□□ 0.92
DDX41-201ENST00000330503 FOXO4P98177 505 aa20.8■□□□□ 0.92
DDX41-201ENST00000330503 CLASRPQ8N2M8 674 aaKnown RBP20.8■□□□□ 0.92
DDX41-201ENST00000330503 CCDC191Q8NCU4 936 aa20.8■□□□□ 0.92
DDX41-201ENST00000330503 ISCA1Q9BUE6 129 aa20.8■□□□□ 0.92
DDX41-201ENST00000330503 TRIM6-TRIM34B2RNG4 842 aa20.79■□□□□ 0.92
DDX41-201ENST00000330503 RILPL2Q969X0 211 aa20.79■□□□□ 0.92
DDX41-201ENST00000330503 COPRSQ9NQ92 184 aa20.79■□□□□ 0.92
DDX41-201ENST00000330503 BCL9LQ86UU0 1499 aa20.78■□□□□ 0.92
DDX41-201ENST00000330503 TJP1Q07157 1748 aa20.78■□□□□ 0.92
DDX41-201ENST00000330503 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.78■□□□□ 0.92
DDX41-201ENST00000330503 CHMLP26374 656 aa20.78■□□□□ 0.92
DDX41-201ENST00000330503 PTPN12Q05209 780 aaKnown RBP20.78■□□□□ 0.92
DDX41-201ENST00000330503 TCIRG1Q13488 830 aa20.78■□□□□ 0.92
DDX41-201ENST00000330503 ACSBG1Q96GR2 724 aa20.78■□□□□ 0.92
DDX41-201ENST00000330503 SIL1Q9H173 461 aa20.78■□□□□ 0.92
DDX41-201ENST00000330503 ERC2O15083 957 aa20.77■□□□□ 0.92
DDX41-201ENST00000330503 NGLY1Q96IV0 654 aa20.77■□□□□ 0.92
DDX41-201ENST00000330503 C8orf37Q96NL8 207 aa20.77■□□□□ 0.92
DDX41-201ENST00000330503 ZNF330Q9Y3S2 320 aaPredicted RBP20.77■□□□□ 0.92
DDX41-201ENST00000330503 TTC41PQ6P2S7 1318 aa20.77■□□□□ 0.92
DDX41-201ENST00000330503 MAP4K4O95819 1239 aaPredicted RBP20.76■□□□□ 0.91
DDX41-201ENST00000330503 TRIM28Q13263 835 aaKnown RBP20.76■□□□□ 0.91
DDX41-201ENST00000330503 LMBR1LQ6UX01 489 aa20.76■□□□□ 0.91
DDX41-201ENST00000330503 EAF2Q96CJ1 260 aaPredicted RBP20.76■□□□□ 0.91
DDX41-201ENST00000330503 ESYT1Q9BSJ8 1104 aa20.76■□□□□ 0.91
DDX41-201ENST00000330503 VPS72Q15906 364 aa20.75■□□□□ 0.91
DDX41-201ENST00000330503 RTL5Q5HYW3 569 aaPredicted RBP20.75■□□□□ 0.91
DDX41-201ENST00000330503 SNX21Q969T3 373 aa20.75■□□□□ 0.91
DDX41-201ENST00000330503 IFIT2P09913 472 aaKnown RBP20.75■□□□□ 0.91
DDX41-201ENST00000330503 KIF6Q6ZMV9 814 aa20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms