RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 CABP2Q9NPB3 220 aa14.06□□□□□ -0.16
SHMT2-201ENST00000328923 TPRNQ4KMQ1 711 aa14.06□□□□□ -0.16
SHMT2-201ENST00000328923 CEP135Q66GS9 1140 aa14.06□□□□□ -0.16
SHMT2-201ENST00000328923 PLEKHF1Q96S99 279 aa14.06□□□□□ -0.16
SHMT2-201ENST00000328923 TMPOP42166 694 aaKnown RBP14.05□□□□□ -0.16
SHMT2-201ENST00000328923 TPD52L1Q16890 204 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-201ENST00000328923 LRCH2Q5VUJ6 765 aa14.05□□□□□ -0.16
SHMT2-201ENST00000328923 FBXO18Q8NFZ0 1043 aa14.05□□□□□ -0.16
SHMT2-201ENST00000328923 TRIM35Q9UPQ4 493 aa14.05□□□□□ -0.16
SHMT2-201ENST00000328923 MAGEA9P43362 315 aa14.05□□□□□ -0.16
SHMT2-201ENST00000328923 PPP2R5AQ15172 486 aa14.05□□□□□ -0.16
SHMT2-201ENST00000328923 PTCH1Q13635 1447 aa14.05□□□□□ -0.16
SHMT2-201ENST00000328923 ATP6V1AP38606 617 aa14.04□□□□□ -0.16
SHMT2-201ENST00000328923 NOM1Q5C9Z4 860 aaKnown RBP14.04□□□□□ -0.16
SHMT2-201ENST00000328923 ERO1AQ96HE7 468 aa14.04□□□□□ -0.16
SHMT2-201ENST00000328923 ZCCHC17Q9NP64 241 aaKnown RBP14.04□□□□□ -0.16
SHMT2-201ENST00000328923 NRXN3Q9Y4C0 1643 aa14.04□□□□□ -0.16
SHMT2-201ENST00000328923 ZNF142P52746 1687 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-201ENST00000328923 ANKRD26Q9UPS8 1709 aa14.04□□□□□ -0.16
SHMT2-201ENST00000328923 H2AFXP16104 143 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-201ENST00000328923 MAP2K2P36507 400 aa14.04□□□□□ -0.16
SHMT2-201ENST00000328923 CLCN6P51797 869 aa14.04□□□□□ -0.16
SHMT2-201ENST00000328923 TPM4P67936 248 aa14.04□□□□□ -0.16
SHMT2-201ENST00000328923 MCTP2Q6DN12 878 aa14.04□□□□□ -0.16
SHMT2-201ENST00000328923 CALR3Q96L12 384 aaKnown RBP14.04□□□□□ -0.16
SHMT2-201ENST00000328923 GOLGA5Q8TBA6 731 aa14.03□□□□□ -0.16
SHMT2-201ENST00000328923 ARHGAP45Q92619 1136 aa14.03□□□□□ -0.16
SHMT2-201ENST00000328923 MINK1Q8N4C8 1332 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-201ENST00000328923 BIRC2Q13490 618 aa14.03□□□□□ -0.16
SHMT2-201ENST00000328923 SWT1Q5T5J6 900 aaKnown RBP14.03□□□□□ -0.16
SHMT2-201ENST00000328923 ANKRD45Q5TZF3 282 aa14.03□□□□□ -0.16
SHMT2-201ENST00000328923 CCDC186Q7Z3E2 898 aa14.03□□□□□ -0.16
SHMT2-201ENST00000328923 DLC1Q96QB1 1528 aa14.02□□□□□ -0.16
SHMT2-201ENST00000328923 GPS2Q13227 327 aa14.02□□□□□ -0.16
SHMT2-201ENST00000328923 ANKRD20A12PQ8NF67 263 aa14.02□□□□□ -0.16
SHMT2-201ENST00000328923 USP26Q9BXU7 913 aa14.02□□□□□ -0.16
SHMT2-201ENST00000328923 CEP170BQ9Y4F5 1589 aaPredicted RBP14.02□□□□□ -0.16
SHMT2-201ENST00000328923 SUGP1Q8IWZ8 645 aaKnown RBP14.02□□□□□ -0.17
SHMT2-201ENST00000328923 CDC42BPGQ6DT37 1551 aa14.02□□□□□ -0.17
SHMT2-201ENST00000328923 SLIT1O75093 1534 aa14.02□□□□□ -0.17
SHMT2-201ENST00000328923 ARHGAP23Q9P227 1491 aa14.02□□□□□ -0.17
SHMT2-201ENST00000328923 TMEM2Q9UHN6 1383 aa14.01□□□□□ -0.17
SHMT2-201ENST00000328923 LTBP4Q8N2S1 1624 aa14.01□□□□□ -0.17
SHMT2-201ENST00000328923 ZBTB7BO15156 539 aaPredicted RBP14.01□□□□□ -0.17
SHMT2-201ENST00000328923 HTATSF1O43719 755 aaKnown RBP14.01□□□□□ -0.17
SHMT2-201ENST00000328923 CCDC183Q5T5S1 534 aa14.01□□□□□ -0.17
SHMT2-201ENST00000328923 RPAINQ86UA6 219 aa14.01□□□□□ -0.17
SHMT2-201ENST00000328923 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.01□□□□□ -0.17
SHMT2-201ENST00000328923 ATAD2Q6PL18 1390 aa14.01□□□□□ -0.17
SHMT2-201ENST00000328923 PPP1R12AO14974 1030 aaPredicted RBP14.01□□□□□ -0.17
SHMT2-201ENST00000328923 NRBP1Q9UHY1 535 aa14.01□□□□□ -0.17
SHMT2-201ENST00000328923 ERCC6LQ2NKX8 1250 aa14□□□□□ -0.17
SHMT2-201ENST00000328923 USP48Q86UV5 1035 aa14□□□□□ -0.17
SHMT2-201ENST00000328923 OS9Q13438 667 aaPredicted RBP14□□□□□ -0.17
SHMT2-201ENST00000328923 REXO1L1PQ8IX06 675 aa14□□□□□ -0.17
SHMT2-201ENST00000328923 A0A1W2PP64 1363 aa14□□□□□ -0.17
SHMT2-201ENST00000328923 EIF3CLB5ME19 914 aaKnown RBP13.99□□□□□ -0.17
SHMT2-201ENST00000328923 MAP9Q49MG5 647 aa13.99□□□□□ -0.17
SHMT2-201ENST00000328923 EIF3CQ99613 913 aaKnown RBP13.99□□□□□ -0.17
SHMT2-201ENST00000328923 USP27XA6NNY8 438 aa13.99□□□□□ -0.17
SHMT2-201ENST00000328923 ST18O60284 1047 aa13.99□□□□□ -0.17
SHMT2-201ENST00000328923 SLU7O95391 586 aaKnown RBP13.99□□□□□ -0.17
SHMT2-201ENST00000328923 BRD1O95696 1058 aa13.99□□□□□ -0.17
SHMT2-201ENST00000328923 HDGFP51858 240 aaKnown RBP13.99□□□□□ -0.17
SHMT2-201ENST00000328923 LRRN4CLQ8ND94 238 aa13.99□□□□□ -0.17
SHMT2-201ENST00000328923 ZNF526Q8TF50 670 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-201ENST00000328923 KIF24Q5T7B8 1368 aa13.99□□□□□ -0.17
SHMT2-201ENST00000328923 OAS2P29728 719 aaKnown RBP13.98□□□□□ -0.17
SHMT2-201ENST00000328923 LMAN1P49257 510 aa13.98□□□□□ -0.17
SHMT2-201ENST00000328923 ZSCAN25Q6NSZ9 544 aa13.98□□□□□ -0.17
SHMT2-201ENST00000328923 BORCS6Q96GS4 357 aa13.98□□□□□ -0.17
SHMT2-201ENST00000328923 METP08581 1390 aa13.98□□□□□ -0.17
SHMT2-201ENST00000328923 ANKRD65E5RJM6 399 aa13.98□□□□□ -0.17
SHMT2-201ENST00000328923 WAPLQ7Z5K2 1190 aa13.98□□□□□ -0.17
SHMT2-201ENST00000328923 CDK19Q9BWU1 502 aa13.98□□□□□ -0.17
SHMT2-201ENST00000328923 ZBTB12Q9Y330 459 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-201ENST00000328923 NCKAP5LQ9HCH0 1330 aa13.97□□□□□ -0.17
SHMT2-201ENST00000328923 ZRANB2O95218 330 aaKnown RBP eCLIP13.97□□□□□ -0.171e-7■□□□□ 9.4
SHMT2-201ENST00000328923 GIMAP6Q6P9H5 292 aa13.97□□□□□ -0.17
SHMT2-201ENST00000328923 MMS22LQ6ZRQ5 1243 aa13.97□□□□□ -0.17
SHMT2-201ENST00000328923 PPM1EQ8WY54 764 aa13.97□□□□□ -0.17
SHMT2-201ENST00000328923 CD163L1Q9NR16 1453 aa13.97□□□□□ -0.17
SHMT2-201ENST00000328923 ABCC4O15439 1325 aa13.97□□□□□ -0.17
SHMT2-201ENST00000328923 GSPT1P15170 499 aaKnown RBP13.97□□□□□ -0.17
SHMT2-201ENST00000328923 MX1P20591 662 aa13.97□□□□□ -0.17
SHMT2-201ENST00000328923 SCP2P22307 547 aa13.97□□□□□ -0.17
SHMT2-201ENST00000328923 INTS3Q68E01 1043 aaKnown RBP13.97□□□□□ -0.17
SHMT2-201ENST00000328923 FOXR1Q6PIV2 292 aa13.97□□□□□ -0.17
SHMT2-201ENST00000328923 CEP89Q96ST8 783 aa13.97□□□□□ -0.17
SHMT2-201ENST00000328923 RNF20Q5VTR2 975 aa13.96□□□□□ -0.17
SHMT2-201ENST00000328923 TTLL5Q6EMB2 1281 aa13.96□□□□□ -0.17
SHMT2-201ENST00000328923 DRC7Q8IY82 874 aa13.96□□□□□ -0.17
SHMT2-201ENST00000328923 IQUBQ8NA54 791 aa13.96□□□□□ -0.17
SHMT2-201ENST00000328923 FUCA2Q9BTY2 467 aa13.96□□□□□ -0.17
SHMT2-201ENST00000328923 TTC22Q5TAA0 569 aa13.96□□□□□ -0.18
SHMT2-201ENST00000328923 KNDC1Q76NI1 1749 aa13.95□□□□□ -0.18
SHMT2-201ENST00000328923 ACTN2P35609 894 aa13.95□□□□□ -0.18
SHMT2-201ENST00000328923 NBPF10Q6P3W6 841 aaKnown RBP13.95□□□□□ -0.18
SHMT2-201ENST00000328923 PLEKHM2Q8IWE5 1019 aa13.95□□□□□ -0.18
SHMT2-201ENST00000328923 SIRT2Q8IXJ6 389 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms