RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 DBF4Q9UBU7 674 aaPredicted RBP19.51■□□□□ 0.71
USHBP1-202ENST00000324554 OVOS2A0A0G2JMS6 1433 aa19.5■□□□□ 0.71
USHBP1-202ENST00000324554 CAMTA1Q9Y6Y1 1673 aa19.5■□□□□ 0.71
USHBP1-202ENST00000324554 EPB41L2O43491 1005 aaKnown RBP19.5■□□□□ 0.71
USHBP1-202ENST00000324554 CUL4AQ13619 759 aa19.5■□□□□ 0.71
USHBP1-202ENST00000324554 MAP4K4O95819 1239 aaPredicted RBP19.5■□□□□ 0.71
USHBP1-202ENST00000324554 PHKG2P15735 406 aa19.49■□□□□ 0.71
USHBP1-202ENST00000324554 LARP1Q6PKG0 1096 aaKnown RBP19.49■□□□□ 0.71
USHBP1-202ENST00000324554 NFATC2IPQ8NCF5 419 aa19.49■□□□□ 0.71
USHBP1-202ENST00000324554 RBSNQ9H1K0 784 aa19.49■□□□□ 0.71
USHBP1-202ENST00000324554 NSFL1CQ9UNZ2 370 aaKnown RBP19.49■□□□□ 0.71
USHBP1-202ENST00000324554 CYP27B1O15528 508 aa19.49■□□□□ 0.71
USHBP1-202ENST00000324554 PRIM1P49642 420 aaKnown RBP19.49■□□□□ 0.71
USHBP1-202ENST00000324554 EVA1CP58658 441 aa19.49■□□□□ 0.71
USHBP1-202ENST00000324554 SPG7Q9UQ90 795 aa19.49■□□□□ 0.71
USHBP1-202ENST00000324554 GIGYF1O75420 1035 aaPredicted RBP19.48■□□□□ 0.71
USHBP1-202ENST00000324554 NOL8Q76FK4 1167 aaKnown RBP19.48■□□□□ 0.71
USHBP1-202ENST00000324554 HEG1Q9ULI3 1381 aa19.48■□□□□ 0.71
USHBP1-202ENST00000324554 HSPA4P34932 840 aa19.47■□□□□ 0.71
USHBP1-202ENST00000324554 MTX1Q13505 466 aa19.47■□□□□ 0.71
USHBP1-202ENST00000324554 PROSER3Q2NL68 480 aa19.47■□□□□ 0.71
USHBP1-202ENST00000324554 HSP90AB4PQ58FF6 505 aa19.47■□□□□ 0.71
USHBP1-202ENST00000324554 UPF3BQ9BZI7 483 aaKnown RBP19.47■□□□□ 0.71
USHBP1-202ENST00000324554 TMEM63CQ9P1W3 806 aa19.47■□□□□ 0.71
USHBP1-202ENST00000324554 ANP32BQ92688 251 aaKnown RBP19.46■□□□□ 0.71
USHBP1-202ENST00000324554 INTS4Q96HW7 963 aaKnown RBP19.46■□□□□ 0.71
USHBP1-202ENST00000324554 MAP3K2Q9Y2U5 619 aa19.46■□□□□ 0.71
USHBP1-202ENST00000324554 WDR17Q8IZU2 1322 aa19.46■□□□□ 0.71
USHBP1-202ENST00000324554 SGSM2O43147 1006 aa19.46■□□□□ 0.71
USHBP1-202ENST00000324554 BRD1O95696 1058 aa19.45■□□□□ 0.7
USHBP1-202ENST00000324554 PIP4K2BP78356 416 aa19.45■□□□□ 0.7
USHBP1-202ENST00000324554 IFNL2Q8IZJ0 200 aa19.45■□□□□ 0.7
USHBP1-202ENST00000324554 CNTROBQ8N137 903 aa19.45■□□□□ 0.7
USHBP1-202ENST00000324554 RAD50Q92878 1312 aa19.45■□□□□ 0.7
USHBP1-202ENST00000324554 USP42Q9H9J4 1324 aaKnown RBP19.45■□□□□ 0.7
USHBP1-202ENST00000324554 KDM6AO15550 1401 aaPredicted RBP19.45■□□□□ 0.7
USHBP1-202ENST00000324554 ALDH1L1O75891 902 aa19.44■□□□□ 0.7
USHBP1-202ENST00000324554 KSR2Q6VAB6 950 aa19.44■□□□□ 0.7
USHBP1-202ENST00000324554 SIPA1L3O60292 1781 aaPredicted RBP19.44■□□□□ 0.7
USHBP1-202ENST00000324554 DDX54Q8TDD1 881 aaKnown RBP19.44■□□□□ 0.7
USHBP1-202ENST00000324554 BTG4Q9NY30 223 aa19.44■□□□□ 0.7
USHBP1-202ENST00000324554 TTC41PQ6P2S7 1318 aa19.43■□□□□ 0.7
USHBP1-202ENST00000324554 OS9Q13438 667 aaPredicted RBP19.43■□□□□ 0.7
USHBP1-202ENST00000324554 ZSCAN30Q86W11 494 aa19.43■□□□□ 0.7
USHBP1-202ENST00000324554 SLC52A2Q9HAB3 445 aa19.43■□□□□ 0.7
USHBP1-202ENST00000324554 C9orf78Q9NZ63 289 aaPredicted RBP19.43■□□□□ 0.7
USHBP1-202ENST00000324554 COL5A2P05997 1499 aaPredicted RBP19.43■□□□□ 0.7
USHBP1-202ENST00000324554 LSG1Q9H089 658 aaKnown RBP19.43■□□□□ 0.7
USHBP1-202ENST00000324554 NHSL1Q5SYE7 1610 aa19.43■□□□□ 0.7
USHBP1-202ENST00000324554 ROBO1Q9Y6N7 1651 aa19.42■□□□□ 0.7
USHBP1-202ENST00000324554 SYCE3A1L190 88 aa19.42■□□□□ 0.7
USHBP1-202ENST00000324554 CWF19L2Q2TBE0 894 aaKnown RBP19.42■□□□□ 0.7
USHBP1-202ENST00000324554 ADAMTS7Q9UKP4 1686 aa19.42■□□□□ 0.7
USHBP1-202ENST00000324554 GLRX3O76003 335 aaKnown RBP19.41■□□□□ 0.7
USHBP1-202ENST00000324554 LRSAM1Q6UWE0 723 aa19.41■□□□□ 0.7
USHBP1-202ENST00000324554 CLASRPQ8N2M8 674 aaKnown RBP19.41■□□□□ 0.7
USHBP1-202ENST00000324554 PDLIM2Q96JY6 352 aa19.41■□□□□ 0.7
USHBP1-202ENST00000324554 HYPKQ9NX55 129 aa19.41■□□□□ 0.7
USHBP1-202ENST00000324554 ZNF790Q6PG37 636 aa19.4■□□□□ 0.7
USHBP1-202ENST00000324554 CWC27Q6UX04 472 aaKnown RBP19.4■□□□□ 0.7
USHBP1-202ENST00000324554 ZCRB1Q8TBF4 217 aaKnown RBP19.4■□□□□ 0.7
USHBP1-202ENST00000324554 SNX14Q9Y5W7 946 aa19.4■□□□□ 0.7
USHBP1-202ENST00000324554 ABCA3Q99758 1704 aa19.4■□□□□ 0.7
USHBP1-202ENST00000324554 PIP4K2AP48426 406 aaPredicted RBP19.4■□□□□ 0.7
USHBP1-202ENST00000324554 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.4■□□□□ 0.7
USHBP1-202ENST00000324554 PA2G4Q9UQ80 394 aaKnown RBP19.4■□□□□ 0.7
USHBP1-202ENST00000324554 ADAMTS2O95450 1211 aa19.39■□□□□ 0.69
USHBP1-202ENST00000324554 LINS1Q8NG48 757 aa19.39■□□□□ 0.69
USHBP1-202ENST00000324554 DCAF5Q96JK2 942 aa19.39■□□□□ 0.69
USHBP1-202ENST00000324554 LTBP4Q8N2S1 1624 aa19.38■□□□□ 0.69
USHBP1-202ENST00000324554 IL2RBP14784 551 aa19.38■□□□□ 0.69
USHBP1-202ENST00000324554 CABP4P57796 275 aa19.38■□□□□ 0.69
USHBP1-202ENST00000324554 RASEFQ8IZ41 740 aa19.38■□□□□ 0.69
USHBP1-202ENST00000324554 DDX21Q9NR30 783 aaKnown RBP eCLIP19.38■□□□□ 0.69
USHBP1-202ENST00000324554 ECHDC1Q9NTX5 307 aa19.38■□□□□ 0.69
USHBP1-202ENST00000324554 HDAC5Q9UQL6 1122 aa19.38■□□□□ 0.69
USHBP1-202ENST00000324554 GRM8O00222 908 aa19.37■□□□□ 0.69
USHBP1-202ENST00000324554 MBD3O95983 291 aa19.37■□□□□ 0.69
USHBP1-202ENST00000324554 PDIA6Q15084 440 aa19.37■□□□□ 0.69
USHBP1-202ENST00000324554 ERC1Q8IUD2 1116 aa19.37■□□□□ 0.69
USHBP1-202ENST00000324554 ZNF496Q96IT1 587 aaPredicted RBP19.37■□□□□ 0.69
USHBP1-202ENST00000324554 TTC14Q96N46 770 aa19.37■□□□□ 0.69
USHBP1-202ENST00000324554 UTYO14607 1347 aa19.37■□□□□ 0.69
USHBP1-202ENST00000324554 FOXD4L6Q3SYB3 417 aaPredicted RBP19.37■□□□□ 0.69
USHBP1-202ENST00000324554 FOXD4L3Q6VB84 417 aaPredicted RBP19.37■□□□□ 0.69
USHBP1-202ENST00000324554 KIAA1211Q6ZU35 1233 aa19.37■□□□□ 0.69
USHBP1-202ENST00000324554 KAZALD1Q96I82 304 aa19.37■□□□□ 0.69
USHBP1-202ENST00000324554 CARD10Q9BWT7 1032 aa19.37■□□□□ 0.69
USHBP1-202ENST00000324554 NUTM2BA6NNL0 878 aaPredicted RBP19.36■□□□□ 0.69
USHBP1-202ENST00000324554 NUTM2EB1AL46 878 aaPredicted RBP19.36■□□□□ 0.69
USHBP1-202ENST00000324554 AIMP1Q12904 312 aaKnown RBP19.36■□□□□ 0.69
USHBP1-202ENST00000324554 NUTM2AQ8IVF1 878 aaPredicted RBP19.36■□□□□ 0.69
USHBP1-202ENST00000324554 SUCLG2Q96I99 432 aa19.36■□□□□ 0.69
USHBP1-202ENST00000324554 DDX58O95786 925 aaKnown RBP19.36■□□□□ 0.69
USHBP1-202ENST00000324554 DIAPH3Q9NSV4 1193 aa19.36■□□□□ 0.69
USHBP1-202ENST00000324554 IFIT2P09913 472 aaKnown RBP19.35■□□□□ 0.69
USHBP1-202ENST00000324554 MSNP26038 577 aaKnown RBP19.35■□□□□ 0.69
USHBP1-202ENST00000324554 GPATCH3Q96I76 525 aa19.35■□□□□ 0.69
USHBP1-202ENST00000324554 GDPD2Q9HCC8 539 aa19.35■□□□□ 0.69
USHBP1-202ENST00000324554 MYL6BP14649 208 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms