RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 PIP4K2BP78356 416 aa12.57□□□□□ -0.4
COL3A1-202ENST00000317840 G3BP1Q13283 466 aaKnown RBP eCLIP12.57□□□□□ -0.4
COL3A1-202ENST00000317840 NECAB1Q8N987 351 aa12.57□□□□□ -0.4
COL3A1-202ENST00000317840 TCEANC2Q96MN5 208 aa12.57□□□□□ -0.4
COL3A1-202ENST00000317840 C19orf44Q9H6X5 657 aa12.57□□□□□ -0.4
COL3A1-202ENST00000317840 MYO5BQ9ULV0 1848 aa12.57□□□□□ -0.4
COL3A1-202ENST00000317840 GJB2P29033 226 aa12.57□□□□□ -0.4
COL3A1-202ENST00000317840 HSPA4P34932 840 aa12.57□□□□□ -0.4
COL3A1-202ENST00000317840 LARP1BQ659C4 914 aaKnown RBP12.57□□□□□ -0.4
COL3A1-202ENST00000317840 DNM1Q05193 864 aaKnown RBP12.57□□□□□ -0.4
COL3A1-202ENST00000317840 STK3Q13188 491 aa12.57□□□□□ -0.4
COL3A1-202ENST00000317840 PDLIM2Q96JY6 352 aa12.57□□□□□ -0.4
COL3A1-202ENST00000317840 SNX14Q9Y5W7 946 aa12.57□□□□□ -0.4
COL3A1-202ENST00000317840 SGSM2O43147 1006 aa12.56□□□□□ -0.4
COL3A1-202ENST00000317840 ZNF500O60304 480 aaPredicted RBP12.56□□□□□ -0.4
COL3A1-202ENST00000317840 CAMK4Q16566 473 aa12.56□□□□□ -0.4
COL3A1-202ENST00000317840 SASS6Q6UVJ0 657 aa12.56□□□□□ -0.4
COL3A1-202ENST00000317840 RASEFQ8IZ41 740 aa12.56□□□□□ -0.4
COL3A1-202ENST00000317840 FSD1Q9BTV5 496 aa12.56□□□□□ -0.4
COL3A1-202ENST00000317840 PA2G4Q9UQ80 394 aaKnown RBP12.56□□□□□ -0.4
COL3A1-202ENST00000317840 LETM1O95202 739 aaPredicted RBP12.56□□□□□ -0.4
COL3A1-202ENST00000317840 HSP90B1P14625 803 aaKnown RBP12.56□□□□□ -0.4
COL3A1-202ENST00000317840 UBE2HP62256 183 aa12.56□□□□□ -0.4
COL3A1-202ENST00000317840 C17orf53Q8N3J3 647 aaPredicted RBP12.56□□□□□ -0.4
COL3A1-202ENST00000317840 IL25Q9H293 177 aa12.56□□□□□ -0.4
COL3A1-202ENST00000317840 RGS12O14924 1447 aa12.56□□□□□ -0.4
COL3A1-202ENST00000317840 SIRT1Q96EB6 747 aa12.56□□□□□ -0.4
COL3A1-202ENST00000317840 MAP7D2Q96T17 732 aa12.56□□□□□ -0.4
COL3A1-202ENST00000317840 CCDC8Q9H0W5 538 aaPredicted RBP12.55□□□□□ -0.4
COL3A1-202ENST00000317840 SBNO1A3KN83 1393 aa12.55□□□□□ -0.4
COL3A1-202ENST00000317840 GOLGA6L6A8MZA4 724 aa12.55□□□□□ -0.4
COL3A1-202ENST00000317840 SSH3Q8TE77 659 aa12.55□□□□□ -0.4
COL3A1-202ENST00000317840 STAP2Q9UGK3 403 aa12.55□□□□□ -0.4
COL3A1-202ENST00000317840 HDAC5Q9UQL6 1122 aa12.55□□□□□ -0.4
COL3A1-202ENST00000317840 RAD50Q92878 1312 aa12.55□□□□□ -0.4
COL3A1-202ENST00000317840 KIF20BQ96Q89 1820 aa12.55□□□□□ -0.4
COL3A1-202ENST00000317840 F13A1P00488 732 aa12.55□□□□□ -0.4
COL3A1-202ENST00000317840 CABP4P57796 275 aa12.55□□□□□ -0.4
COL3A1-202ENST00000317840 PREX1Q8TCU6 1659 aa12.55□□□□□ -0.4
COL3A1-202ENST00000317840 ARHGEF10O15013 1369 aa12.54□□□□□ -0.4
COL3A1-202ENST00000317840 HTATSF1O43719 755 aaKnown RBP12.54□□□□□ -0.4
COL3A1-202ENST00000317840 BICD2Q8TD16 824 aa12.54□□□□□ -0.4
COL3A1-202ENST00000317840 BOLA2Q9H3K6 86 aa12.54□□□□□ -0.4
COL3A1-202ENST00000317840 ECHDC1Q9NTX5 307 aa12.54□□□□□ -0.4
COL3A1-202ENST00000317840 USP6P35125 1406 aa12.54□□□□□ -0.4
COL3A1-202ENST00000317840 CRB1P82279 1406 aa12.54□□□□□ -0.4
COL3A1-202ENST00000317840 FOSBP53539 338 aa12.54□□□□□ -0.4
COL3A1-202ENST00000317840 NEXNQ0ZGT2 675 aa12.54□□□□□ -0.4
COL3A1-202ENST00000317840 RNF20Q5VTR2 975 aa12.54□□□□□ -0.4
COL3A1-202ENST00000317840 BCL11BQ9C0K0 894 aaPredicted RBP12.54□□□□□ -0.4
COL3A1-202ENST00000317840 MAP3K5Q99683 1374 aa12.53□□□□□ -0.4
COL3A1-202ENST00000317840 FAM177BA6PVY3 158 aa12.53□□□□□ -0.4
COL3A1-202ENST00000317840 KCNQ3O43525 872 aa12.53□□□□□ -0.4
COL3A1-202ENST00000317840 ADAMTS2O95450 1211 aa12.53□□□□□ -0.4
COL3A1-202ENST00000317840 CCDC192P0DO97 292 aa12.53□□□□□ -0.4
COL3A1-202ENST00000317840 KRT85P78386 507 aa12.53□□□□□ -0.4
COL3A1-202ENST00000317840 FAM173BQ6P4H8 233 aa12.53□□□□□ -0.4
COL3A1-202ENST00000317840 CADPS2Q86UW7 1296 aa12.53□□□□□ -0.4
COL3A1-202ENST00000317840 MAP3K2Q9Y2U5 619 aa12.53□□□□□ -0.4
COL3A1-202ENST00000317840 CDC42BPGQ6DT37 1551 aa12.53□□□□□ -0.4
COL3A1-202ENST00000317840 H3BQV1 296 aa12.53□□□□□ -0.4
COL3A1-202ENST00000317840 NOLC1Q14978 699 aaKnown RBP eCLIP12.53□□□□□ -0.4
COL3A1-202ENST00000317840 IFFO2Q5TF58 517 aa12.53□□□□□ -0.4
COL3A1-202ENST00000317840 RUFY3Q7L099 469 aa12.53□□□□□ -0.4
COL3A1-202ENST00000317840 IP6K1Q92551 441 aa12.53□□□□□ -0.4
COL3A1-202ENST00000317840 TFIP11Q9UBB9 837 aaKnown RBP12.53□□□□□ -0.4
COL3A1-202ENST00000317840 IGSF1Q8N6C5 1336 aa12.53□□□□□ -0.4
COL3A1-202ENST00000317840 CWF19L2Q2TBE0 894 aaKnown RBP12.52□□□□□ -0.4
COL3A1-202ENST00000317840 CKAP2LQ8IYA6 745 aa12.52□□□□□ -0.4
COL3A1-202ENST00000317840 TSC1Q92574 1164 aa12.52□□□□□ -0.4
COL3A1-202ENST00000317840 CEBPZQ03701 1054 aaKnown RBP12.52□□□□□ -0.41
COL3A1-202ENST00000317840 BLOC1S2Q6QNY1 142 aa12.52□□□□□ -0.41
COL3A1-202ENST00000317840 DYNC1I1O14576 645 aa12.52□□□□□ -0.41
COL3A1-202ENST00000317840 PSMA5P28066 241 aa12.52□□□□□ -0.41
COL3A1-202ENST00000317840 ZSCAN31Q96LW9 406 aaPredicted RBP12.52□□□□□ -0.41
COL3A1-202ENST00000317840 CCDC85AQ96PX6 553 aaPredicted RBP12.52□□□□□ -0.41
COL3A1-202ENST00000317840 REREQ9P2R6 1566 aa12.51□□□□□ -0.41
COL3A1-202ENST00000317840 NPHP1O15259 732 aa12.51□□□□□ -0.41
COL3A1-202ENST00000317840 HMGN5P82970 282 aaKnown RBP12.51□□□□□ -0.41
COL3A1-202ENST00000317840 ERC1Q8IUD2 1116 aa12.51□□□□□ -0.41
COL3A1-202ENST00000317840 ANKRD26Q9UPS8 1709 aa12.51□□□□□ -0.41
COL3A1-202ENST00000317840 DDX58O95786 925 aaKnown RBP12.51□□□□□ -0.41
COL3A1-202ENST00000317840 UVSSAQ2YD98 709 aa12.51□□□□□ -0.41
COL3A1-202ENST00000317840 DBF4Q9UBU7 674 aaPredicted RBP12.51□□□□□ -0.41
COL3A1-202ENST00000317840 RICTORQ6R327 1708 aa12.51□□□□□ -0.41
COL3A1-202ENST00000317840 PTH1RQ03431 593 aa12.51□□□□□ -0.41
COL3A1-202ENST00000317840 NFATC2IPQ8NCF5 419 aa12.51□□□□□ -0.41
COL3A1-202ENST00000317840 TRIM5Q9C035 493 aa12.51□□□□□ -0.41
COL3A1-202ENST00000317840 NUP62CLQ9H1M0 184 aa12.51□□□□□ -0.41
COL3A1-202ENST00000317840 SH2B1Q9NRF2 756 aaPredicted RBP12.51□□□□□ -0.41
COL3A1-202ENST00000317840 RBM8AQ9Y5S9 174 aaKnown RBP12.51□□□□□ -0.41
COL3A1-202ENST00000317840 DLC1Q96QB1 1528 aa12.51□□□□□ -0.41
COL3A1-202ENST00000317840 PDCP20941 246 aa12.5□□□□□ -0.41
COL3A1-202ENST00000317840 ADCK5Q3MIX3 580 aa12.5□□□□□ -0.41
COL3A1-202ENST00000317840 MTERF4Q7Z6M4 381 aaKnown RBP12.5□□□□□ -0.41
COL3A1-202ENST00000317840 TNMDQ9H2S6 317 aa12.5□□□□□ -0.41
COL3A1-202ENST00000317840 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.5□□□□□ -0.41
COL3A1-202ENST00000317840 SSH2Q76I76 1423 aa12.5□□□□□ -0.41
COL3A1-202ENST00000317840 PI4K2BQ8TCG2 481 aa12.5□□□□□ -0.41
COL3A1-202ENST00000317840 LSG1Q9H089 658 aaKnown RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms