RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 METP08581 1390 aa9.6□□□□□ -0.87
VPS41-202ENST00000310301 SYCE3A1L190 88 aa9.6□□□□□ -0.87
VPS41-202ENST00000310301 TRMT112Q9UI30 125 aaKnown RBP9.6□□□□□ -0.87
VPS41-202ENST00000310301 PIP4K2AP48426 406 aaPredicted RBP9.6□□□□□ -0.87
VPS41-202ENST00000310301 PPP4R3BQ5MIZ7 849 aa9.6□□□□□ -0.87
VPS41-202ENST00000310301 CDC5LQ99459 802 aaKnown RBP9.6□□□□□ -0.87
VPS41-202ENST00000310301 HOXC9P31274 260 aa9.6□□□□□ -0.87
VPS41-202ENST00000310301 STK11IPQ8N1F8 1099 aa9.6□□□□□ -0.87
VPS41-202ENST00000310301 FSD1Q9BTV5 496 aa9.6□□□□□ -0.87
VPS41-202ENST00000310301 SRCIN1Q9C0H9 1055 aa9.6□□□□□ -0.87
VPS41-202ENST00000310301 ANKARQ7Z5J8 1434 aa9.59□□□□□ -0.87
VPS41-202ENST00000310301 PLXNC1O60486 1568 aa9.59□□□□□ -0.87
VPS41-202ENST00000310301 POLR3GO15318 223 aaPredicted RBP9.59□□□□□ -0.87
VPS41-202ENST00000310301 RBM25P49756 843 aaKnown RBP9.59□□□□□ -0.87
VPS41-202ENST00000310301 ZNF428Q96B54 188 aa9.59□□□□□ -0.87
VPS41-202ENST00000310301 NEUROD6Q96NK8 337 aa9.59□□□□□ -0.87
VPS41-202ENST00000310301 CIZ1Q9ULV3 898 aaPredicted RBP9.59□□□□□ -0.87
VPS41-202ENST00000310301 LRRFIP2Q9Y608 721 aaKnown RBP9.59□□□□□ -0.87
VPS41-202ENST00000310301 NCOA3Q9Y6Q9 1424 aa9.59□□□□□ -0.87
VPS41-202ENST00000310301 CARD10Q9BWT7 1032 aa9.59□□□□□ -0.87
VPS41-202ENST00000310301 ANKIB1Q9P2G1 1089 aa9.59□□□□□ -0.87
VPS41-202ENST00000310301 DIP2CQ9Y2E4 1556 aa9.59□□□□□ -0.87
VPS41-202ENST00000310301 KRT85P78386 507 aa9.59□□□□□ -0.87
VPS41-202ENST00000310301 TTLL12Q14166 644 aaPredicted RBP9.59□□□□□ -0.87
VPS41-202ENST00000310301 IQCEQ6IPM2 695 aa9.59□□□□□ -0.87
VPS41-202ENST00000310301 SPATA31A3Q5VYP0 1347 aa9.59□□□□□ -0.87
VPS41-202ENST00000310301 FYB1O15117 783 aa9.59□□□□□ -0.87
VPS41-202ENST00000310301 NF2P35240 595 aa9.59□□□□□ -0.87
VPS41-202ENST00000310301 ADAMTS8Q9UP79 889 aa9.59□□□□□ -0.87
VPS41-202ENST00000310301 GTF2F1P35269 517 aaKnown RBP eCLIP9.58□□□□□ -0.889e-7■■■■□ 24.5
VPS41-202ENST00000310301 ME1P48163 572 aa9.58□□□□□ -0.88
VPS41-202ENST00000310301 ERC1Q8IUD2 1116 aa9.58□□□□□ -0.88
VPS41-202ENST00000310301 NLRP3Q96P20 1036 aa9.58□□□□□ -0.88
VPS41-202ENST00000310301 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.58□□□□□ -0.88
VPS41-202ENST00000310301 PTPN14Q15678 1187 aa9.58□□□□□ -0.88
VPS41-202ENST00000310301 BEGAINQ9BUH8 593 aa9.58□□□□□ -0.88
VPS41-202ENST00000310301 DACH1Q9UI36 760 aa9.58□□□□□ -0.88
VPS41-202ENST00000310301 ZMYM4Q5VZL5 1548 aa9.58□□□□□ -0.88
VPS41-202ENST00000310301 SPDYE4A6NLX3 237 aa9.58□□□□□ -0.88
VPS41-202ENST00000310301 SLF2Q8IX21 1173 aa9.58□□□□□ -0.88
VPS41-202ENST00000310301 GJD4Q96KN9 370 aaPredicted RBP9.58□□□□□ -0.88
VPS41-202ENST00000310301 NUP62CLQ9H1M0 184 aa9.58□□□□□ -0.88
VPS41-202ENST00000310301 C1orf115Q9H7X2 142 aa9.58□□□□□ -0.88
VPS41-202ENST00000310301 DBF4Q9UBU7 674 aaPredicted RBP9.58□□□□□ -0.88
VPS41-202ENST00000310301 SETD1BQ9UPS6 1966 aaKnown RBP9.58□□□□□ -0.88
VPS41-202ENST00000310301 STK3Q13188 491 aa9.58□□□□□ -0.88
VPS41-202ENST00000310301 CLASRPQ8N2M8 674 aaKnown RBP9.58□□□□□ -0.88
VPS41-202ENST00000310301 SBNO1A3KN83 1393 aa9.58□□□□□ -0.88
VPS41-202ENST00000310301 C6orf229H3BNL8 230 aa9.58□□□□□ -0.88
VPS41-202ENST00000310301 CCT4P50991 539 aaKnown RBP9.58□□□□□ -0.88
VPS41-202ENST00000310301 GCC1Q96CN9 775 aa9.58□□□□□ -0.88
VPS41-202ENST00000310301 ZNF219Q9P2Y4 722 aaPredicted RBP9.58□□□□□ -0.88
VPS41-202ENST00000310301 PLA2R1Q13018 1463 aa9.57□□□□□ -0.88
VPS41-202ENST00000310301 SLC3A2P08195 630 aaKnown RBP9.57□□□□□ -0.88
VPS41-202ENST00000310301 POLR3AO14802 1390 aaPredicted RBP9.57□□□□□ -0.88
VPS41-202ENST00000310301 TRIM37O94972 964 aa9.57□□□□□ -0.88
VPS41-202ENST00000310301 CCDC158Q5M9N0 1113 aa9.57□□□□□ -0.88
VPS41-202ENST00000310301 CRACR2AQ9BSW2 395 aa9.57□□□□□ -0.88
VPS41-202ENST00000310301 HDAC9Q9UKV0 1011 aa9.57□□□□□ -0.88
VPS41-202ENST00000310301 CPS1P31327 1500 aa9.57□□□□□ -0.88
VPS41-202ENST00000310301 NKTRP30414 1462 aaKnown RBP9.57□□□□□ -0.88
VPS41-202ENST00000310301 MYO1BO43795 1136 aa9.57□□□□□ -0.88
VPS41-202ENST00000310301 SLC4A2P04920 1241 aa9.57□□□□□ -0.88
VPS41-202ENST00000310301 CAVIN4Q5BKX8 364 aa9.57□□□□□ -0.88
VPS41-202ENST00000310301 WDR63Q8IWG1 891 aa9.57□□□□□ -0.88
VPS41-202ENST00000310301 EYA3Q99504 573 aa9.57□□□□□ -0.88
VPS41-202ENST00000310301 GBP3Q9H0R5 595 aa9.57□□□□□ -0.88
VPS41-202ENST00000310301 ZFYVE9O95405 1425 aa9.57□□□□□ -0.88
VPS41-202ENST00000310301 ANKRD18AQ8IVF6 992 aa9.57□□□□□ -0.88
VPS41-202ENST00000310301 BBXQ8WY36 941 aaPredicted RBP9.57□□□□□ -0.88
VPS41-202ENST00000310301 DDX11Q96FC9 970 aa9.57□□□□□ -0.88
VPS41-202ENST00000310301 SPATA32Q96LK8 384 aa9.57□□□□□ -0.88
VPS41-202ENST00000310301 LUC7LQ9NQ29 371 aaKnown RBP9.57□□□□□ -0.88
VPS41-202ENST00000310301 CYP46A1Q9Y6A2 500 aa9.57□□□□□ -0.88
VPS41-202ENST00000310301 TXLNAP40222 546 aa9.56□□□□□ -0.88
VPS41-202ENST00000310301 UPF3BQ9BZI7 483 aaKnown RBP9.56□□□□□ -0.88
VPS41-202ENST00000310301 RALGAPBQ86X10 1494 aa9.56□□□□□ -0.88
VPS41-202ENST00000310301 PRIM1P49642 420 aaKnown RBP9.56□□□□□ -0.88
VPS41-202ENST00000310301 PDE3AQ14432 1141 aa9.56□□□□□ -0.88
VPS41-202ENST00000310301 LARP1BQ659C4 914 aaKnown RBP9.56□□□□□ -0.88
VPS41-202ENST00000310301 CEP57L1Q8IYX8 460 aa9.56□□□□□ -0.88
VPS41-202ENST00000310301 NLGN1Q8N2Q7 840 aa9.56□□□□□ -0.88
VPS41-202ENST00000310301 JMYQ8N9B5 988 aa9.56□□□□□ -0.88
VPS41-202ENST00000310301 KIF2AO00139 706 aaPredicted RBP9.56□□□□□ -0.88
VPS41-202ENST00000310301 SYCP1Q15431 976 aa9.56□□□□□ -0.88
VPS41-202ENST00000310301 CEP126Q9P2H0 1117 aa9.56□□□□□ -0.88
VPS41-202ENST00000310301 MAP3K19Q56UN5 1328 aa9.56□□□□□ -0.88
VPS41-202ENST00000310301 ADGRB3O60242 1522 aa9.56□□□□□ -0.88
VPS41-202ENST00000310301 BCAR3O75815 825 aa9.56□□□□□ -0.88
VPS41-202ENST00000310301 H0YIN7 160 aa9.55□□□□□ -0.88
VPS41-202ENST00000310301 IFIT1P09914 478 aaKnown RBP9.55□□□□□ -0.88
VPS41-202ENST00000310301 TXLNBQ8N3L3 684 aa9.55□□□□□ -0.88
VPS41-202ENST00000310301 KIF18AQ8NI77 898 aa9.55□□□□□ -0.88
VPS41-202ENST00000310301 KIAA0232Q92628 1395 aa9.55□□□□□ -0.88
VPS41-202ENST00000310301 CCDC148Q8NFR7 591 aa9.55□□□□□ -0.88
VPS41-202ENST00000310301 TNNT1P13805 278 aa9.55□□□□□ -0.88
VPS41-202ENST00000310301 RNF187Q5TA31 235 aaPredicted RBP9.55□□□□□ -0.88
VPS41-202ENST00000310301 SOGA3Q5TF21 947 aa9.55□□□□□ -0.88
VPS41-202ENST00000310301 DPY19L2Q6NUT2 758 aa9.55□□□□□ -0.88
VPS41-202ENST00000310301 CDK5RAP3Q96JB5 506 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 106.4 ms