RNA–Protein interactions for RNA: ENST00000296682.3

PRDM9-201, Transcript of PR/SET domain 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRDM9, Length 3,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM9-201ENST00000296682 USP26Q9BXU7 913 aa11.32□□□□□ -0.6
PRDM9-201ENST00000296682 UBE3BQ7Z3V4 1068 aa11.32□□□□□ -0.6
PRDM9-201ENST00000296682 OSBPL3Q9H4L5 887 aa11.32□□□□□ -0.6
PRDM9-201ENST00000296682 TMEM94Q12767 1356 aa11.31□□□□□ -0.6
PRDM9-201ENST00000296682 RABEP1Q15276 862 aa11.31□□□□□ -0.6
PRDM9-201ENST00000296682 DNAJC2Q99543 621 aaKnown RBP11.31□□□□□ -0.6
PRDM9-201ENST00000296682 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.31□□□□□ -0.6
PRDM9-201ENST00000296682 GIGYF1O75420 1035 aaPredicted RBP11.31□□□□□ -0.6
PRDM9-201ENST00000296682 PKP1Q13835 747 aa11.31□□□□□ -0.6
PRDM9-201ENST00000296682 NPHP4O75161 1426 aaPredicted RBP11.31□□□□□ -0.6
PRDM9-201ENST00000296682 FGD1P98174 961 aa11.31□□□□□ -0.6
PRDM9-201ENST00000296682 NUP188Q5SRE5 1749 aa11.31□□□□□ -0.6
PRDM9-201ENST00000296682 PRPF40AO75400 957 aaKnown RBP11.3□□□□□ -0.6
PRDM9-201ENST00000296682 ZNF790Q6PG37 636 aa11.3□□□□□ -0.6
PRDM9-201ENST00000296682 CLEC17AQ6ZS10 378 aa11.3□□□□□ -0.6
PRDM9-201ENST00000296682 TCEANC2Q96MN5 208 aa11.3□□□□□ -0.6
PRDM9-201ENST00000296682 CADPS2Q86UW7 1296 aa11.3□□□□□ -0.6
PRDM9-201ENST00000296682 IFNL2Q8IZJ0 200 aa11.3□□□□□ -0.6
PRDM9-201ENST00000296682 KIF1BPQ96EK5 621 aa11.3□□□□□ -0.6
PRDM9-201ENST00000296682 KSR2Q6VAB6 950 aa11.29□□□□□ -0.6
PRDM9-201ENST00000296682 PALD1Q9ULE6 856 aa11.29□□□□□ -0.6
PRDM9-201ENST00000296682 A0A087WZG4 1122 aa11.29□□□□□ -0.6
PRDM9-201ENST00000296682 PPFIA3O75145 1194 aa11.29□□□□□ -0.6
PRDM9-201ENST00000296682 PLCB2Q00722 1185 aa11.29□□□□□ -0.6
PRDM9-201ENST00000296682 FSD1Q9BTV5 496 aa11.29□□□□□ -0.6
PRDM9-201ENST00000296682 GDPD2Q9HCC8 539 aa11.29□□□□□ -0.6
PRDM9-201ENST00000296682 CNTROBQ8N137 903 aa11.29□□□□□ -0.6
PRDM9-201ENST00000296682 EDC3Q96F86 508 aaKnown RBP11.29□□□□□ -0.6
PRDM9-201ENST00000296682 CHMP4AQ9BY43 222 aa11.29□□□□□ -0.6
PRDM9-201ENST00000296682 PANK2Q9BZ23 570 aa11.29□□□□□ -0.6
PRDM9-201ENST00000296682 BICC1Q9H694 974 aaKnown RBP11.29□□□□□ -0.6
PRDM9-201ENST00000296682 NUTM2BA6NNL0 878 aaPredicted RBP11.28□□□□□ -0.6
PRDM9-201ENST00000296682 NUTM2EB1AL46 878 aaPredicted RBP11.28□□□□□ -0.6
PRDM9-201ENST00000296682 HOXB7P09629 217 aa11.28□□□□□ -0.6
PRDM9-201ENST00000296682 ANKRD13DQ6ZTN6 518 aa11.28□□□□□ -0.6
PRDM9-201ENST00000296682 NUTM2AQ8IVF1 878 aaPredicted RBP11.28□□□□□ -0.6
PRDM9-201ENST00000296682 GPATCH3Q96I76 525 aa11.28□□□□□ -0.6
PRDM9-201ENST00000296682 ADAMTS2O95450 1211 aa11.28□□□□□ -0.6
PRDM9-201ENST00000296682 A1BGP04217 495 aa11.28□□□□□ -0.6
PRDM9-201ENST00000296682 FOSBP53539 338 aa11.28□□□□□ -0.6
PRDM9-201ENST00000296682 BEND3Q5T5X7 828 aa11.28□□□□□ -0.6
PRDM9-201ENST00000296682 GORABQ5T7V8 394 aa11.28□□□□□ -0.6
PRDM9-201ENST00000296682 CAVIN1Q6NZI2 390 aaKnown RBP11.28□□□□□ -0.6
PRDM9-201ENST00000296682 ESYT1Q9BSJ8 1104 aa11.28□□□□□ -0.6
PRDM9-201ENST00000296682 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.28□□□□□ -0.6
PRDM9-201ENST00000296682 DDX11L8A8MPP1 907 aa11.28□□□□□ -0.6
PRDM9-201ENST00000296682 TAF7LQ5H9L4 462 aa11.28□□□□□ -0.6
PRDM9-201ENST00000296682 SUCLG2Q96I99 432 aa11.28□□□□□ -0.6
PRDM9-201ENST00000296682 GRM8O00222 908 aa11.27□□□□□ -0.6
PRDM9-201ENST00000296682 CHMLP26374 656 aa11.27□□□□□ -0.6
PRDM9-201ENST00000296682 STRCQ7RTU9 1775 aa11.27□□□□□ -0.61
PRDM9-201ENST00000296682 HYPKQ9NX55 129 aa11.27□□□□□ -0.61
PRDM9-201ENST00000296682 CICQ96RK0 1608 aaPredicted RBP11.27□□□□□ -0.61
PRDM9-201ENST00000296682 PRPF40BQ6NWY9 871 aaKnown RBP11.27□□□□□ -0.61
PRDM9-201ENST00000296682 ERBB3P21860 1342 aa11.26□□□□□ -0.61
PRDM9-201ENST00000296682 NPHP3Q7Z494 1330 aa11.26□□□□□ -0.61
PRDM9-201ENST00000296682 WNK3Q9BYP7 1800 aa11.26□□□□□ -0.61
PRDM9-201ENST00000296682 HSP90AB4PQ58FF6 505 aa11.26□□□□□ -0.61
PRDM9-201ENST00000296682 ANP32BQ92688 251 aaKnown RBP11.26□□□□□ -0.61
PRDM9-201ENST00000296682 GPTP24298 496 aa11.26□□□□□ -0.61
PRDM9-201ENST00000296682 STK3Q13188 491 aa11.26□□□□□ -0.61
PRDM9-201ENST00000296682 LARP1Q6PKG0 1096 aaKnown RBP11.26□□□□□ -0.61
PRDM9-201ENST00000296682 TRIM44Q96DX7 344 aaPredicted RBP11.26□□□□□ -0.61
PRDM9-201ENST00000296682 PXDNQ92626 1479 aa11.26□□□□□ -0.61
PRDM9-201ENST00000296682 EPB41L2O43491 1005 aaKnown RBP11.25□□□□□ -0.61
PRDM9-201ENST00000296682 NHSL1Q5SYE7 1610 aa11.25□□□□□ -0.61
PRDM9-201ENST00000296682 ARFGEF2Q9Y6D5 1785 aa11.25□□□□□ -0.61
PRDM9-201ENST00000296682 MPNDQ8N594 471 aa11.25□□□□□ -0.61
PRDM9-201ENST00000296682 SLC52A2Q9HAB3 445 aa11.25□□□□□ -0.61
PRDM9-201ENST00000296682 PLCH1Q4KWH8 1693 aa11.25□□□□□ -0.61
PRDM9-201ENST00000296682 L1TD1Q5T7N2 865 aaKnown RBP11.25□□□□□ -0.61
PRDM9-201ENST00000296682 TMX3Q96JJ7 454 aa11.25□□□□□ -0.61
PRDM9-201ENST00000296682 FMNL2Q96PY5 1086 aa11.25□□□□□ -0.61
PRDM9-201ENST00000296682 DDX21Q9NR30 783 aaKnown RBP eCLIP11.25□□□□□ -0.61
PRDM9-201ENST00000296682 CYP27B1O15528 508 aa11.24□□□□□ -0.61
PRDM9-201ENST00000296682 SNRPA1P09661 255 aaKnown RBP11.24□□□□□ -0.61
PRDM9-201ENST00000296682 PHKG2P15735 406 aa11.24□□□□□ -0.61
PRDM9-201ENST00000296682 RNF214Q8ND24 703 aa11.24□□□□□ -0.61
PRDM9-201ENST00000296682 JAKMIP1Q96N16 626 aaKnown RBP11.24□□□□□ -0.61
PRDM9-201ENST00000296682 IL25Q9H293 177 aa11.24□□□□□ -0.61
PRDM9-201ENST00000296682 CASTP20810 708 aaKnown RBP11.24□□□□□ -0.61
PRDM9-201ENST00000296682 PIP4K2BP78356 416 aa11.24□□□□□ -0.61
PRDM9-201ENST00000296682 LINS1Q8NG48 757 aa11.24□□□□□ -0.61
PRDM9-201ENST00000296682 ZCRB1Q8TBF4 217 aaKnown RBP11.24□□□□□ -0.61
PRDM9-201ENST00000296682 ZNF335Q9H4Z2 1342 aaPredicted RBP11.24□□□□□ -0.61
PRDM9-201ENST00000296682 C1orf167Q5SNV9 1468 aa11.24□□□□□ -0.61
PRDM9-201ENST00000296682 VPS37CA5D8V6 355 aaPredicted RBP11.24□□□□□ -0.61
PRDM9-201ENST00000296682 LMBR1LQ6UX01 489 aa11.24□□□□□ -0.61
PRDM9-201ENST00000296682 SSH3Q8TE77 659 aa11.24□□□□□ -0.61
PRDM9-201ENST00000296682 SNRKQ9NRH2 765 aa11.24□□□□□ -0.61
PRDM9-201ENST00000296682 KDM4AO75164 1064 aa11.23□□□□□ -0.61
PRDM9-201ENST00000296682 ECHDC1Q9NTX5 307 aa11.23□□□□□ -0.61
PRDM9-201ENST00000296682 TLR7Q9NYK1 1049 aaKnown RBP11.23□□□□□ -0.61
PRDM9-201ENST00000296682 SLAIN2Q9P270 581 aa11.23□□□□□ -0.61
PRDM9-201ENST00000296682 RBM27Q9P2N5 1060 aaKnown RBP11.23□□□□□ -0.61
PRDM9-201ENST00000296682 HDAC5Q9UQL6 1122 aa11.23□□□□□ -0.61
PRDM9-201ENST00000296682 TJP1Q07157 1748 aa11.23□□□□□ -0.61
PRDM9-201ENST00000296682 AOX1Q06278 1338 aa11.23□□□□□ -0.61
PRDM9-201ENST00000296682 RAB11FIP3O75154 756 aa11.23□□□□□ -0.61
PRDM9-201ENST00000296682 COL15A1P39059 1388 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms