RNA–Protein interactions for RNA: ENST00000294816.6

LMX1A-201, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene LMX1A, Length 3,350 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-201ENST00000294816 CDC37L1Q7L3B6 337 aa12.18□□□□□ -0.46
LMX1A-201ENST00000294816 SPATA32Q96LK8 384 aa12.18□□□□□ -0.46
LMX1A-201ENST00000294816 TRERF1Q96PN7 1200 aa12.18□□□□□ -0.46
LMX1A-201ENST00000294816 DDX41Q9UJV9 622 aaKnown RBP12.18□□□□□ -0.46
LMX1A-201ENST00000294816 GOLGA6L19H0YKK7 550 aa12.18□□□□□ -0.46
LMX1A-201ENST00000294816 PPP1R42Q7Z4L9 355 aa12.18□□□□□ -0.46
LMX1A-201ENST00000294816 FILIP1Q7Z7B0 1213 aa12.18□□□□□ -0.46
LMX1A-201ENST00000294816 HYPKQ9NX55 129 aa12.18□□□□□ -0.46
LMX1A-201ENST00000294816 PAXBP1Q9Y5B6 917 aa12.18□□□□□ -0.46
LMX1A-201ENST00000294816 DLG5Q8TDM6 1919 aa12.18□□□□□ -0.46
LMX1A-201ENST00000294816 KIF20BQ96Q89 1820 aa12.17□□□□□ -0.46
LMX1A-201ENST00000294816 SRGAP3O43295 1099 aa12.17□□□□□ -0.46
LMX1A-201ENST00000294816 TXNDC2Q86VQ3 553 aa12.17□□□□□ -0.46
LMX1A-201ENST00000294816 KRT222Q8N1A0 295 aa12.17□□□□□ -0.46
LMX1A-201ENST00000294816 NUDT16Q96DE0 195 aaKnown RBP12.17□□□□□ -0.46
LMX1A-201ENST00000294816 CDK12Q9NYV4 1490 aaPredicted RBP12.17□□□□□ -0.46
LMX1A-201ENST00000294816 ABCA9Q8IUA7 1624 aa12.17□□□□□ -0.46
LMX1A-201ENST00000294816 PTH1RQ03431 593 aa12.17□□□□□ -0.46
LMX1A-201ENST00000294816 ARID5BQ14865 1188 aa12.17□□□□□ -0.46
LMX1A-201ENST00000294816 ME3Q16798 604 aa12.17□□□□□ -0.46
LMX1A-201ENST00000294816 RHPN1Q8TCX5 695 aa12.17□□□□□ -0.46
LMX1A-201ENST00000294816 NPM1P06748 294 aaKnown RBP eCLIP12.16□□□□□ -0.46
LMX1A-201ENST00000294816 CEBPZQ03701 1054 aaKnown RBP12.16□□□□□ -0.46
LMX1A-201ENST00000294816 KIF18AQ8NI77 898 aa12.16□□□□□ -0.46
LMX1A-201ENST00000294816 ZNF215Q9UL58 517 aaPredicted RBP12.16□□□□□ -0.46
LMX1A-201ENST00000294816 FOSBP53539 338 aa12.16□□□□□ -0.46
LMX1A-201ENST00000294816 PTPN14Q15678 1187 aa12.16□□□□□ -0.46
LMX1A-201ENST00000294816 CCDC144BQ3MJ40 725 aa12.16□□□□□ -0.46
LMX1A-201ENST00000294816 CCDC144CPQ8IYA2 1237 aa12.16□□□□□ -0.46
LMX1A-201ENST00000294816 SLFN14P0C7P3 912 aa12.16□□□□□ -0.46
LMX1A-201ENST00000294816 CCDC30Q5VVM6 783 aa12.16□□□□□ -0.46
LMX1A-201ENST00000294816 ZSCAN31Q96LW9 406 aaPredicted RBP12.16□□□□□ -0.46
LMX1A-201ENST00000294816 SOS1Q07889 1333 aaPredicted RBP12.16□□□□□ -0.46
LMX1A-201ENST00000294816 CCDC66A2RUB6 948 aa12.15□□□□□ -0.46
LMX1A-201ENST00000294816 USP27XA6NNY8 438 aa12.15□□□□□ -0.46
LMX1A-201ENST00000294816 WASLO00401 505 aaPredicted RBP12.15□□□□□ -0.46
LMX1A-201ENST00000294816 RAB11FIP3O75154 756 aa12.15□□□□□ -0.46
LMX1A-201ENST00000294816 ZKSCAN1P17029 563 aaPredicted RBP12.15□□□□□ -0.46
LMX1A-201ENST00000294816 ELF2Q15723 593 aa12.15□□□□□ -0.46
LMX1A-201ENST00000294816 MTHFSDQ2M296 383 aaKnown RBP12.15□□□□□ -0.46
LMX1A-201ENST00000294816 ST7Q9NRC1 585 aa12.15□□□□□ -0.46
LMX1A-201ENST00000294816 RUFY2Q8WXA3 655 aa12.15□□□□□ -0.46
LMX1A-201ENST00000294816 SH2B1Q9NRF2 756 aaPredicted RBP12.15□□□□□ -0.46
LMX1A-201ENST00000294816 EDC4Q6P2E9 1401 aaKnown RBP12.15□□□□□ -0.46
LMX1A-201ENST00000294816 ASXL2Q76L83 1435 aa12.15□□□□□ -0.46
LMX1A-201ENST00000294816 ZNF397Q8NF99 534 aaPredicted RBP12.15□□□□□ -0.47
LMX1A-201ENST00000294816 PI4K2BQ8TCG2 481 aa12.15□□□□□ -0.47
LMX1A-201ENST00000294816 TMEM51Q9NW97 253 aa12.15□□□□□ -0.47
LMX1A-201ENST00000294816 BECN2A8MW95 431 aa12.14□□□□□ -0.47
LMX1A-201ENST00000294816 EIF2S2P20042 333 aaKnown RBP12.14□□□□□ -0.47
LMX1A-201ENST00000294816 KMT5BQ4FZB7 885 aa12.14□□□□□ -0.47
LMX1A-201ENST00000294816 USP44Q9H0E7 712 aa12.14□□□□□ -0.47
LMX1A-201ENST00000294816 NR1I2O75469 434 aa12.14□□□□□ -0.47
LMX1A-201ENST00000294816 TERF2Q15554 542 aa12.14□□□□□ -0.47
LMX1A-201ENST00000294816 SYTL4Q96C24 671 aaPredicted RBP12.14□□□□□ -0.47
LMX1A-201ENST00000294816 TPCN1Q9ULQ1 816 aa12.14□□□□□ -0.47
LMX1A-201ENST00000294816 A0A087WWV3 80 aa12.13□□□□□ -0.47
LMX1A-201ENST00000294816 SKILP12757 684 aa12.13□□□□□ -0.47
LMX1A-201ENST00000294816 VPS53Q5VIR6 699 aa12.13□□□□□ -0.47
LMX1A-201ENST00000294816 KIF1BPQ96EK5 621 aa12.13□□□□□ -0.47
LMX1A-201ENST00000294816 SYCP1Q15431 976 aa12.13□□□□□ -0.47
LMX1A-201ENST00000294816 DDX19AQ9NUU7 478 aaKnown RBP12.13□□□□□ -0.47
LMX1A-201ENST00000294816 USP16Q9Y5T5 823 aa12.13□□□□□ -0.47
LMX1A-201ENST00000294816 CCDC61Q9Y6R9 512 aa12.13□□□□□ -0.47
LMX1A-201ENST00000294816 MORC2Q9Y6X9 1032 aaPredicted RBP12.13□□□□□ -0.47
LMX1A-201ENST00000294816 AOX1Q06278 1338 aa12.13□□□□□ -0.47
LMX1A-201ENST00000294816 PLA2G4DQ86XP0 818 aa12.13□□□□□ -0.47
LMX1A-201ENST00000294816 ATP7BP35670 1465 aa12.12□□□□□ -0.47
LMX1A-201ENST00000294816 AATKQ6ZMQ8 1374 aa12.12□□□□□ -0.47
LMX1A-201ENST00000294816 PDE4CQ08493 712 aa12.12□□□□□ -0.47
LMX1A-201ENST00000294816 ST3GAL1Q11201 340 aa12.12□□□□□ -0.47
LMX1A-201ENST00000294816 FBXO38Q6PIJ6 1188 aa12.12□□□□□ -0.47
LMX1A-201ENST00000294816 LARP1Q6PKG0 1096 aaKnown RBP12.12□□□□□ -0.47
LMX1A-201ENST00000294816 SCAND2PQ9GZW5 306 aaPredicted RBP12.12□□□□□ -0.47
LMX1A-201ENST00000294816 PDCP20941 246 aa12.12□□□□□ -0.47
LMX1A-201ENST00000294816 DDX11Q96FC9 970 aa12.12□□□□□ -0.47
LMX1A-201ENST00000294816 CLSTN2Q9H4D0 955 aa12.12□□□□□ -0.47
LMX1A-201ENST00000294816 PHAXQ9H814 394 aaKnown RBP12.12□□□□□ -0.47
LMX1A-201ENST00000294816 HECW2Q9P2P5 1572 aa12.12□□□□□ -0.47
LMX1A-201ENST00000294816 GORABQ5T7V8 394 aa12.12□□□□□ -0.47
LMX1A-201ENST00000294816 TDRD7Q8NHU6 1098 aaKnown RBP12.12□□□□□ -0.47
LMX1A-201ENST00000294816 LEO1Q8WVC0 666 aaPredicted RBP12.12□□□□□ -0.47
LMX1A-201ENST00000294816 GTF3C6Q969F1 213 aa12.12□□□□□ -0.47
LMX1A-201ENST00000294816 TIGD1Q96MW7 591 aa12.12□□□□□ -0.47
LMX1A-201ENST00000294816 RBM8AQ9Y5S9 174 aaKnown RBP12.12□□□□□ -0.47
LMX1A-201ENST00000294816 SIGLEC1Q9BZZ2 1709 aa12.11□□□□□ -0.47
LMX1A-201ENST00000294816 CCDC69A6NI79 296 aa12.11□□□□□ -0.47
LMX1A-201ENST00000294816 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.11□□□□□ -0.47
LMX1A-201ENST00000294816 SSH3Q8TE77 659 aa12.11□□□□□ -0.47
LMX1A-201ENST00000294816 IL17RAQ96F46 866 aa12.11□□□□□ -0.47
LMX1A-201ENST00000294816 PIK3C2BO00750 1634 aa12.11□□□□□ -0.47
LMX1A-201ENST00000294816 CCDC171Q6TFL3 1326 aa12.11□□□□□ -0.47
LMX1A-201ENST00000294816 NPHP3Q7Z494 1330 aa12.11□□□□□ -0.47
LMX1A-201ENST00000294816 H3BQV1 296 aa12.11□□□□□ -0.47
LMX1A-201ENST00000294816 EPB41L2O43491 1005 aaKnown RBP12.11□□□□□ -0.47
LMX1A-201ENST00000294816 IFFO2Q5TF58 517 aa12.11□□□□□ -0.47
LMX1A-201ENST00000294816 HDGFL1Q5TGJ6 251 aa12.11□□□□□ -0.47
LMX1A-201ENST00000294816 LRRC8AQ8IWT6 810 aa12.11□□□□□ -0.47
LMX1A-201ENST00000294816 MAP3K19Q56UN5 1328 aa12.11□□□□□ -0.47
LMX1A-201ENST00000294816 FRMPD1Q5SYB0 1578 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms