RNA–Protein interactions for RNA: ENST00000293968.11

CCNF-201, Transcript of cyclin F, humanhuman

TSL 1 (best)

Gene CCNF, Length 4,173 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNF-201ENST00000293968 MTMR6Q9Y217 621 aa17.53■□□□□ 0.4
CCNF-201ENST00000293968 CLTCQ00610 1675 aaKnown RBP17.53■□□□□ 0.4
CCNF-201ENST00000293968 RIOK3O14730 519 aaKnown RBP17.52■□□□□ 0.4
CCNF-201ENST00000293968 IGSF3O75054 1194 aa17.52■□□□□ 0.4
CCNF-201ENST00000293968 SIL1Q9H173 461 aa17.52■□□□□ 0.4
CCNF-201ENST00000293968 SMAP1Q8IYB5 467 aaPredicted RBP17.52■□□□□ 0.4
CCNF-201ENST00000293968 NAP1L2Q9ULW6 460 aaPredicted RBP17.52■□□□□ 0.4
CCNF-201ENST00000293968 CCDC9Q9Y3X0 531 aaKnown RBP17.52■□□□□ 0.4
CCNF-201ENST00000293968 FGD1P98174 961 aa17.52■□□□□ 0.39
CCNF-201ENST00000293968 HYPKQ9NX55 129 aa17.52■□□□□ 0.39
CCNF-201ENST00000293968 HSP90AB4PQ58FF6 505 aa17.51■□□□□ 0.39
CCNF-201ENST00000293968 DNAAF4Q8WXU2 420 aa17.51■□□□□ 0.39
CCNF-201ENST00000293968 FBXW7Q969H0 707 aa17.51■□□□□ 0.39
CCNF-201ENST00000293968 TTC14Q96N46 770 aa17.51■□□□□ 0.39
CCNF-201ENST00000293968 ROBO2Q9HCK4 1378 aa17.51■□□□□ 0.39
CCNF-201ENST00000293968 PREX1Q8TCU6 1659 aa17.51■□□□□ 0.39
CCNF-201ENST00000293968 ME3Q16798 604 aa17.51■□□□□ 0.39
CCNF-201ENST00000293968 ZNF710Q8N1W2 664 aa17.51■□□□□ 0.39
CCNF-201ENST00000293968 CCDC8Q9H0W5 538 aaPredicted RBP17.51■□□□□ 0.39
CCNF-201ENST00000293968 AP5Z1O43299 807 aa17.5■□□□□ 0.39
CCNF-201ENST00000293968 HSP90B1P14625 803 aaKnown RBP17.5■□□□□ 0.39
CCNF-201ENST00000293968 CCDC186Q7Z3E2 898 aa17.5■□□□□ 0.39
CCNF-201ENST00000293968 FLT4P35916 1363 aa17.5■□□□□ 0.39
CCNF-201ENST00000293968 AIMP1Q12904 312 aaKnown RBP17.5■□□□□ 0.39
CCNF-201ENST00000293968 TMEM87AQ8NBN3 555 aa17.5■□□□□ 0.39
CCNF-201ENST00000293968 DACT1Q9NYF0 836 aa17.5■□□□□ 0.39
CCNF-201ENST00000293968 TEFQ10587 303 aa17.5■□□□□ 0.39
CCNF-201ENST00000293968 SPATA32Q96LK8 384 aa17.5■□□□□ 0.39
CCNF-201ENST00000293968 ZSCAN31Q96LW9 406 aaPredicted RBP17.5■□□□□ 0.39
CCNF-201ENST00000293968 LIG1P18858 919 aa17.5■□□□□ 0.39
CCNF-201ENST00000293968 CDC37L1Q7L3B6 337 aa17.5■□□□□ 0.39
CCNF-201ENST00000293968 ABTB2Q8N961 1025 aa17.5■□□□□ 0.39
CCNF-201ENST00000293968 FSD1Q9BTV5 496 aa17.5■□□□□ 0.39
CCNF-201ENST00000293968 RBM8AQ9Y5S9 174 aaKnown RBP17.5■□□□□ 0.39
CCNF-201ENST00000293968 AOX1Q06278 1338 aa17.49■□□□□ 0.39
CCNF-201ENST00000293968 ANO6Q4KMQ2 910 aa17.49■□□□□ 0.39
CCNF-201ENST00000293968 ECHDC1Q9NTX5 307 aa17.49■□□□□ 0.39
CCNF-201ENST00000293968 TYRO3Q06418 890 aa17.49■□□□□ 0.39
CCNF-201ENST00000293968 FAM227BQ96M60 508 aa17.49■□□□□ 0.39
CCNF-201ENST00000293968 BOLA2Q9H3K6 86 aa17.49■□□□□ 0.39
CCNF-201ENST00000293968 TAOK2Q9UL54 1235 aa17.49■□□□□ 0.39
CCNF-201ENST00000293968 LRMPQ12912 555 aa17.48■□□□□ 0.39
CCNF-201ENST00000293968 SH2B1Q9NRF2 756 aaPredicted RBP17.48■□□□□ 0.39
CCNF-201ENST00000293968 ARHGEF10O15013 1369 aa17.48■□□□□ 0.39
CCNF-201ENST00000293968 U2AF2P26368 475 aaKnown RBP eCLIP17.48■□□□□ 0.39
CCNF-201ENST00000293968 TTC6Q86TZ1 520 aa17.48■□□□□ 0.39
CCNF-201ENST00000293968 KCNF1Q9H3M0 494 aa17.48■□□□□ 0.39
CCNF-201ENST00000293968 PRDM4Q9UKN5 801 aa17.48■□□□□ 0.39
CCNF-201ENST00000293968 FAM200AQ8TCP9 573 aa17.48■□□□□ 0.39
CCNF-201ENST00000293968 TPM3P06753 285 aa17.47■□□□□ 0.39
CCNF-201ENST00000293968 VPS53Q5VIR6 699 aa17.47■□□□□ 0.39
CCNF-201ENST00000293968 KIAA1524Q8TCG1 905 aa17.47■□□□□ 0.39
CCNF-201ENST00000293968 H3BQV1 296 aa17.47■□□□□ 0.39
CCNF-201ENST00000293968 KCNQ3O43525 872 aa17.47■□□□□ 0.39
CCNF-201ENST00000293968 ATP2B3Q16720 1220 aa17.47■□□□□ 0.39
CCNF-201ENST00000293968 IFFO2Q5TF58 517 aa17.47■□□□□ 0.39
CCNF-201ENST00000293968 BLOC1S2Q6QNY1 142 aa17.47■□□□□ 0.39
CCNF-201ENST00000293968 DDX11Q96FC9 970 aa17.47■□□□□ 0.39
CCNF-201ENST00000293968 TPCN1Q9ULQ1 816 aa17.47■□□□□ 0.39
CCNF-201ENST00000293968 PPFIA3O75145 1194 aa17.47■□□□□ 0.39
CCNF-201ENST00000293968 G3BP1Q13283 466 aaKnown RBP eCLIP17.47■□□□□ 0.39
CCNF-201ENST00000293968 TPD52L1Q16890 204 aaPredicted RBP17.47■□□□□ 0.39
CCNF-201ENST00000293968 NRBP1Q9UHY1 535 aa17.46■□□□□ 0.39
CCNF-201ENST00000293968 DLC1Q96QB1 1528 aa17.46■□□□□ 0.39
CCNF-201ENST00000293968 PLEKHG3A1L390 1219 aa17.46■□□□□ 0.39
CCNF-201ENST00000293968 CREB3L3Q68CJ9 461 aa17.46■□□□□ 0.39
CCNF-201ENST00000293968 LGR6Q9HBX8 967 aa17.46■□□□□ 0.39
CCNF-201ENST00000293968 NMIQ13287 307 aaPredicted RBP17.46■□□□□ 0.38
CCNF-201ENST00000293968 CWF19L2Q2TBE0 894 aaKnown RBP17.45■□□□□ 0.38
CCNF-201ENST00000293968 SBNO1A3KN83 1393 aa17.45■□□□□ 0.38
CCNF-201ENST00000293968 PSMA5P28066 241 aa17.45■□□□□ 0.38
CCNF-201ENST00000293968 LMOD2Q6P5Q4 547 aa17.45■□□□□ 0.38
CCNF-201ENST00000293968 MPRIPQ6WCQ1 1025 aa17.45■□□□□ 0.38
CCNF-201ENST00000293968 USP6P35125 1406 aa17.45■□□□□ 0.38
CCNF-201ENST00000293968 DNAJC25Q9H1X3 360 aa17.45■□□□□ 0.38
CCNF-201ENST00000293968 MAP3K2Q9Y2U5 619 aa17.45■□□□□ 0.38
CCNF-201ENST00000293968 MAP3K5Q99683 1374 aa17.45■□□□□ 0.38
CCNF-201ENST00000293968 GOLGA6L19H0YKK7 550 aa17.44■□□□□ 0.38
CCNF-201ENST00000293968 PDCP20941 246 aa17.44■□□□□ 0.38
CCNF-201ENST00000293968 IGSF1Q8N6C5 1336 aa17.44■□□□□ 0.38
CCNF-201ENST00000293968 POLA2Q14181 598 aa17.44■□□□□ 0.38
CCNF-201ENST00000293968 RNF20Q5VTR2 975 aa17.44■□□□□ 0.38
CCNF-201ENST00000293968 LARP1Q6PKG0 1096 aaKnown RBP17.44■□□□□ 0.38
CCNF-201ENST00000293968 AMOTL2Q9Y2J4 779 aa17.44■□□□□ 0.38
CCNF-201ENST00000293968 CCDC171Q6TFL3 1326 aa17.44■□□□□ 0.38
CCNF-201ENST00000293968 HOXC9P31274 260 aa17.44■□□□□ 0.38
CCNF-201ENST00000293968 SPTLC3Q9NUV7 552 aa17.44■□□□□ 0.38
CCNF-201ENST00000293968 PPP6R1Q9UPN7 881 aa17.44■□□□□ 0.38
CCNF-201ENST00000293968 BTBD11A6QL63 1104 aa17.43■□□□□ 0.38
CCNF-201ENST00000293968 TNNT1P13805 278 aa17.43■□□□□ 0.38
CCNF-201ENST00000293968 CBX8Q9HC52 389 aa17.43■□□□□ 0.38
CCNF-201ENST00000293968 HTATSF1O43719 755 aaKnown RBP17.43■□□□□ 0.38
CCNF-201ENST00000293968 EVI5LQ96CN4 794 aa17.43■□□□□ 0.38
CCNF-201ENST00000293968 MRVI1Q9Y6F6 885 aa17.43■□□□□ 0.38
CCNF-201ENST00000293968 ZNF165P49910 485 aa17.43■□□□□ 0.38
CCNF-201ENST00000293968 ZSWIM6Q9HCJ5 1215 aa17.43■□□□□ 0.38
CCNF-201ENST00000293968 BEND3Q5T5X7 828 aa17.42■□□□□ 0.38
CCNF-201ENST00000293968 CLIP2Q9UDT6 1046 aa17.42■□□□□ 0.38
CCNF-201ENST00000293968 EID1Q9Y6B2 187 aa17.42■□□□□ 0.38
CCNF-201ENST00000293968 TTC41PQ6P2S7 1318 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms