RNA–Protein interactions for RNA: ENST00000292729.12

USP41-201, Transcript of ubiquitin specific peptidase 41, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene USP41, Length 920 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP41-201ENST00000292729 EAPPQ56P03 285 aaPredicted RBP14.19□□□□□ -0.14
USP41-201ENST00000292729 CNBD1Q8NA66 436 aa14.19□□□□□ -0.14
USP41-201ENST00000292729 SETDB2Q96T68 719 aa14.19□□□□□ -0.14
USP41-201ENST00000292729 HACL1Q9UJ83 578 aa14.19□□□□□ -0.14
USP41-201ENST00000292729 CLEC11AQ9Y240 323 aa14.19□□□□□ -0.14
USP41-201ENST00000292729 BCORQ6W2J9 1755 aa14.19□□□□□ -0.14
USP41-201ENST00000292729 MLLT1Q03111 559 aaPredicted RBP14.18□□□□□ -0.14
USP41-201ENST00000292729 CCDC93Q567U6 631 aa14.18□□□□□ -0.14
USP41-201ENST00000292729 NPM2Q86SE8 214 aaKnown RBP14.18□□□□□ -0.14
USP41-201ENST00000292729 PANK3Q9H999 370 aa14.18□□□□□ -0.14
USP41-201ENST00000292729 WDR33Q9C0J8 1336 aaKnown RBP14.17□□□□□ -0.14
USP41-201ENST00000292729 THSD7BQ9C0I4 1608 aa14.17□□□□□ -0.14
USP41-201ENST00000292729 EPHX2P34913 555 aa14.17□□□□□ -0.14
USP41-201ENST00000292729 RGS19P49795 217 aa14.17□□□□□ -0.14
USP41-201ENST00000292729 CCDC24Q8N4L8 307 aa14.17□□□□□ -0.14
USP41-201ENST00000292729 TBC1D2BQ9UPU7 963 aa14.17□□□□□ -0.14
USP41-201ENST00000292729 FKBP4Q02790 459 aaKnown RBP eCLIP14.16□□□□□ -0.14
USP41-201ENST00000292729 CNTROBQ8N137 903 aa14.16□□□□□ -0.14
USP41-201ENST00000292729 C7orf43Q8WVR3 580 aa14.16□□□□□ -0.14
USP41-201ENST00000292729 TIMELESSQ9UNS1 1208 aa14.16□□□□□ -0.14
USP41-201ENST00000292729 HEG1Q9ULI3 1381 aa14.16□□□□□ -0.14
USP41-201ENST00000292729 SIPA1L3O60292 1781 aaPredicted RBP14.16□□□□□ -0.14
USP41-201ENST00000292729 TRPM7Q96QT4 1865 aa14.16□□□□□ -0.14
USP41-201ENST00000292729 MTHFSDQ2M296 383 aaKnown RBP14.15□□□□□ -0.14
USP41-201ENST00000292729 RTKN2Q8IZC4 609 aa14.15□□□□□ -0.14
USP41-201ENST00000292729 BEGAINQ9BUH8 593 aa14.15□□□□□ -0.14
USP41-201ENST00000292729 ABT1Q9ULW3 272 aaKnown RBP14.15□□□□□ -0.14
USP41-201ENST00000292729 ZNF330Q9Y3S2 320 aaPredicted RBP14.15□□□□□ -0.14
USP41-201ENST00000292729 ZNF541Q9H0D2 1346 aa14.15□□□□□ -0.15
USP41-201ENST00000292729 CCDC85CA6NKD9 419 aa14.14□□□□□ -0.15
USP41-201ENST00000292729 CAMTA2O94983 1202 aa14.14□□□□□ -0.15
USP41-201ENST00000292729 NPR1P16066 1061 aa14.14□□□□□ -0.15
USP41-201ENST00000292729 ECE1P42892 770 aa14.14□□□□□ -0.15
USP41-201ENST00000292729 ZNF496Q96IT1 587 aaPredicted RBP14.14□□□□□ -0.15
USP41-201ENST00000292729 HMOX1P09601 288 aa14.13□□□□□ -0.15
USP41-201ENST00000292729 ZNF790Q6PG37 636 aa14.13□□□□□ -0.15
USP41-201ENST00000292729 CLEC4GQ6UXB4 293 aa14.13□□□□□ -0.15
USP41-201ENST00000292729 GPC2Q8N158 579 aa14.13□□□□□ -0.15
USP41-201ENST00000292729 RNF123Q5XPI4 1314 aa14.13□□□□□ -0.15
USP41-201ENST00000292729 FZD9O00144 591 aa14.12□□□□□ -0.15
USP41-201ENST00000292729 TEFQ10587 303 aa14.12□□□□□ -0.15
USP41-201ENST00000292729 MAP1SQ66K74 1059 aaPredicted RBP14.12□□□□□ -0.15
USP41-201ENST00000292729 DDX21Q9NR30 783 aaKnown RBP eCLIP14.12□□□□□ -0.15
USP41-201ENST00000292729 ZNF277Q9NRM2 450 aaPredicted RBP14.12□□□□□ -0.15
USP41-201ENST00000292729 KNSTRNQ9Y448 316 aa14.12□□□□□ -0.15
USP41-201ENST00000292729 KLRG2A4D1S0 409 aaPredicted RBP14.11□□□□□ -0.15
USP41-201ENST00000292729 IARSP41252 1262 aaKnown RBP14.11□□□□□ -0.15
USP41-201ENST00000292729 NBPF5PQ86XG9 351 aaPredicted RBP14.11□□□□□ -0.15
USP41-201ENST00000292729 DZIP3Q86Y13 1208 aaKnown RBP14.11□□□□□ -0.15
USP41-201ENST00000292729 FMNL2Q96PY5 1086 aa14.11□□□□□ -0.15
USP41-201ENST00000292729 ZNF652Q9Y2D9 606 aa14.11□□□□□ -0.15
USP41-201ENST00000292729 A1BGP04217 495 aa14.1□□□□□ -0.15
USP41-201ENST00000292729 ALDH1B1P30837 517 aa14.1□□□□□ -0.15
USP41-201ENST00000292729 TPTE2Q6XPS3 522 aa14.1□□□□□ -0.15
USP41-201ENST00000292729 JDP2Q8WYK2 163 aa14.1□□□□□ -0.15
USP41-201ENST00000292729 CAPNS2Q96L46 248 aa14.1□□□□□ -0.15
USP41-201ENST00000292729 RGL2O15211 777 aa14.09□□□□□ -0.15
USP41-201ENST00000292729 LMOD1P29536 600 aaPredicted RBP14.09□□□□□ -0.15
USP41-201ENST00000292729 MAP2K2P36507 400 aa14.09□□□□□ -0.15
USP41-201ENST00000292729 SYNE4Q8N205 404 aa14.09□□□□□ -0.15
USP41-201ENST00000292729 GPR101Q96P66 508 aaPredicted RBP14.09□□□□□ -0.15
USP41-201ENST00000292729 GNAT3A8MTJ3 354 aa14.08□□□□□ -0.16
USP41-201ENST00000292729 CA12O43570 354 aa14.08□□□□□ -0.16
USP41-201ENST00000292729 DIAPH1O60610 1272 aaKnown RBP14.08□□□□□ -0.16
USP41-201ENST00000292729 EIF6P56537 245 aaKnown RBP14.08□□□□□ -0.16
USP41-201ENST00000292729 EIF4G2P78344 907 aaKnown RBP eCLIP14.08□□□□□ -0.16
USP41-201ENST00000292729 PAXIP1Q6ZW49 1069 aaPredicted RBP14.08□□□□□ -0.16
USP41-201ENST00000292729 GAS2L2Q8NHY3 880 aa14.08□□□□□ -0.16
USP41-201ENST00000292729 PSMD1Q99460 953 aa14.08□□□□□ -0.16
USP41-201ENST00000292729 CC2D2BQ6DHV5 1058 aa14.07□□□□□ -0.16
USP41-201ENST00000292729 IL17REQ8NFR9 667 aa14.07□□□□□ -0.16
USP41-201ENST00000292729 CASP8AP2Q9UKL3 1982 aa14.07□□□□□ -0.16
USP41-201ENST00000292729 LTBP1Q14766 1721 aa14.07□□□□□ -0.16
USP41-201ENST00000292729 GRIPAP1Q4V328 841 aa14.06□□□□□ -0.16
USP41-201ENST00000292729 CYP4F22Q6NT55 531 aa14.06□□□□□ -0.16
USP41-201ENST00000292729 USP50Q70EL3 339 aaPredicted RBP14.06□□□□□ -0.16
USP41-201ENST00000292729 TLL2Q9Y6L7 1015 aa14.06□□□□□ -0.16
USP41-201ENST00000292729 SNED1Q8TER0 1413 aa14.06□□□□□ -0.16
USP41-201ENST00000292729 GRM1Q13255 1194 aa14.04□□□□□ -0.16
USP41-201ENST00000292729 AMER1Q5JTC6 1135 aaPredicted RBP14.04□□□□□ -0.16
USP41-201ENST00000292729 CST9Q5W186 159 aa14.04□□□□□ -0.16
USP41-201ENST00000292729 OLFM4Q6UX06 510 aa14.04□□□□□ -0.16
USP41-201ENST00000292729 NIP7Q9Y221 180 aaKnown RBP eCLIP14.04□□□□□ -0.16
USP41-201ENST00000292729 GJA3Q9Y6H8 435 aa14.04□□□□□ -0.16
USP41-201ENST00000292729 CEMIPQ8WUJ3 1361 aa14.04□□□□□ -0.16
USP41-201ENST00000292729 PDE4DIPQ5VU43 2346 aa14.03□□□□□ -0.16
USP41-201ENST00000292729 BTBD11A6QL63 1104 aa14.03□□□□□ -0.16
USP41-201ENST00000292729 HSPA5P11021 654 aaKnown RBP14.03□□□□□ -0.16
USP41-201ENST00000292729 SCNN1DP51172 638 aa14.03□□□□□ -0.16
USP41-201ENST00000292729 HHIPL1Q96JK4 782 aa14.03□□□□□ -0.16
USP41-201ENST00000292729 CFAP44Q96MT7 982 aa14.03□□□□□ -0.16
USP41-201ENST00000292729 MCOLN1Q9GZU1 580 aa14.03□□□□□ -0.16
USP41-201ENST00000292729 USP16Q9Y5T5 823 aa14.03□□□□□ -0.16
USP41-201ENST00000292729 GTF2E1P29083 439 aaPredicted RBP14.02□□□□□ -0.17
USP41-201ENST00000292729 EPS15P42566 896 aa14.02□□□□□ -0.17
USP41-201ENST00000292729 BRPF1P55201 1214 aaPredicted RBP14.02□□□□□ -0.17
USP41-201ENST00000292729 SNRPA1P09661 255 aaKnown RBP14.01□□□□□ -0.17
USP41-201ENST00000292729 FMR1Q06787 632 aaKnown RBP eCLIP14.01□□□□□ -0.17
USP41-201ENST00000292729 CRY2Q49AN0 593 aa14.01□□□□□ -0.17
USP41-201ENST00000292729 SAPCD2Q86UD0 394 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms