RNA–Protein interactions for RNA: ENST00000285116.7

SKA1-201, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SKA1, Length 2,905 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-201ENST00000285116 TTC41PQ6P2S7 1318 aa12.48□□□□□ -0.41
SKA1-201ENST00000285116 MTX1Q13505 466 aa12.48□□□□□ -0.41
SKA1-201ENST00000285116 HSP90AB4PQ58FF6 505 aa12.48□□□□□ -0.41
SKA1-201ENST00000285116 TCHHQ07283 1943 aa12.48□□□□□ -0.41
SKA1-201ENST00000285116 KIF1BPQ96EK5 621 aa12.47□□□□□ -0.41
SKA1-201ENST00000285116 FER1L4A9Z1Z3 1794 aa12.47□□□□□ -0.41
SKA1-201ENST00000285116 PDIA4P13667 645 aaKnown RBP12.47□□□□□ -0.41
SKA1-201ENST00000285116 UNC5CLQ8IV45 518 aa12.47□□□□□ -0.41
SKA1-201ENST00000285116 LSG1Q9H089 658 aaKnown RBP12.47□□□□□ -0.41
SKA1-201ENST00000285116 TRIM6-TRIM34B2RNG4 842 aa12.46□□□□□ -0.41
SKA1-201ENST00000285116 ZNF710Q8N1W2 664 aa12.46□□□□□ -0.41
SKA1-201ENST00000285116 NOLC1Q14978 699 aaKnown RBP eCLIP12.46□□□□□ -0.42
SKA1-201ENST00000285116 HOMEZQ8IX15 550 aa12.46□□□□□ -0.42
SKA1-201ENST00000285116 RHPN1Q8TCX5 695 aa12.46□□□□□ -0.42
SKA1-201ENST00000285116 RILPL2Q969X0 211 aa12.46□□□□□ -0.42
SKA1-201ENST00000285116 TM6SF1Q9BZW5 370 aa12.45□□□□□ -0.42
SKA1-201ENST00000285116 NPM3O75607 178 aaKnown RBP12.45□□□□□ -0.42
SKA1-201ENST00000285116 KIF20AO95235 890 aa12.45□□□□□ -0.42
SKA1-201ENST00000285116 TSHZ3Q63HK5 1081 aa12.45□□□□□ -0.42
SKA1-201ENST00000285116 CNTROBQ8N137 903 aa12.45□□□□□ -0.42
SKA1-201ENST00000285116 SNX14Q9Y5W7 946 aa12.45□□□□□ -0.42
SKA1-201ENST00000285116 MRC1P22897 1456 aa12.45□□□□□ -0.42
SKA1-201ENST00000285116 PIP4K2BP78356 416 aa12.44□□□□□ -0.42
SKA1-201ENST00000285116 CHAMP1Q96JM3 812 aa12.44□□□□□ -0.42
SKA1-201ENST00000285116 KIF3AQ9Y496 699 aa12.44□□□□□ -0.42
SKA1-201ENST00000285116 CCDC183Q5T5S1 534 aa12.44□□□□□ -0.42
SKA1-201ENST00000285116 HDGFL1Q5TGJ6 251 aa12.44□□□□□ -0.42
SKA1-201ENST00000285116 PPP1R42Q7Z4L9 355 aa12.44□□□□□ -0.42
SKA1-201ENST00000285116 SNRKQ9NRH2 765 aa12.44□□□□□ -0.42
SKA1-201ENST00000285116 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.44□□□□□ -0.42
SKA1-201ENST00000285116 ZSCAN22P10073 491 aaPredicted RBP12.44□□□□□ -0.42
SKA1-201ENST00000285116 BEND3Q5T5X7 828 aa12.44□□□□□ -0.42
SKA1-201ENST00000285116 IL25Q9H293 177 aa12.44□□□□□ -0.42
SKA1-201ENST00000285116 LIMCH1Q9UPQ0 1083 aa12.44□□□□□ -0.42
SKA1-201ENST00000285116 ATP6V1DQ9Y5K8 247 aa12.44□□□□□ -0.42
SKA1-201ENST00000285116 HEG1Q9ULI3 1381 aa12.43□□□□□ -0.42
SKA1-201ENST00000285116 EIF4A1P60842 406 aaKnown RBP12.43□□□□□ -0.42
SKA1-201ENST00000285116 USP48Q86UV5 1035 aa12.43□□□□□ -0.42
SKA1-201ENST00000285116 SPTLC3Q9NUV7 552 aa12.43□□□□□ -0.42
SKA1-201ENST00000285116 UBE2HP62256 183 aa12.43□□□□□ -0.42
SKA1-201ENST00000285116 HDAC5Q9UQL6 1122 aa12.43□□□□□ -0.42
SKA1-201ENST00000285116 RGPD2P0DJD1 1756 aa12.43□□□□□ -0.42
SKA1-201ENST00000285116 GLRX3O76003 335 aaKnown RBP12.42□□□□□ -0.42
SKA1-201ENST00000285116 CBX1P83916 185 aa12.42□□□□□ -0.42
SKA1-201ENST00000285116 PPP4R3BQ5MIZ7 849 aa12.42□□□□□ -0.42
SKA1-201ENST00000285116 FOXD4L5Q5VV16 416 aaPredicted RBP12.42□□□□□ -0.42
SKA1-201ENST00000285116 FOXD4L4Q8WXT5 416 aaPredicted RBP12.42□□□□□ -0.42
SKA1-201ENST00000285116 ZSCAN31Q96LW9 406 aaPredicted RBP12.42□□□□□ -0.42
SKA1-201ENST00000285116 SLIT3O75094 1523 aa12.42□□□□□ -0.42
SKA1-201ENST00000285116 ALDH1L1O75891 902 aa12.42□□□□□ -0.42
SKA1-201ENST00000285116 NLRP6P59044 892 aa12.42□□□□□ -0.42
SKA1-201ENST00000285116 VPS53Q5VIR6 699 aa12.42□□□□□ -0.42
SKA1-201ENST00000285116 RUFY2Q8WXA3 655 aa12.42□□□□□ -0.42
SKA1-201ENST00000285116 SH2B1Q9NRF2 756 aaPredicted RBP12.42□□□□□ -0.42
SKA1-201ENST00000285116 ADCY9O60503 1353 aa12.42□□□□□ -0.42
SKA1-201ENST00000285116 A0A0U1RQG5 324 aaPredicted RBP12.41□□□□□ -0.42
SKA1-201ENST00000285116 SURF6O75683 361 aaKnown RBP12.41□□□□□ -0.42
SKA1-201ENST00000285116 DNAAF4Q8WXU2 420 aa12.41□□□□□ -0.42
SKA1-201ENST00000285116 IP6K1Q92551 441 aa12.41□□□□□ -0.42
SKA1-201ENST00000285116 ERC1Q8IUD2 1116 aa12.41□□□□□ -0.42
SKA1-201ENST00000285116 UPF3BQ9BZI7 483 aaKnown RBP12.41□□□□□ -0.42
SKA1-201ENST00000285116 ALDH8A1Q9H2A2 487 aaPredicted RBP12.41□□□□□ -0.42
SKA1-201ENST00000285116 EP400Q96L91 3159 aa12.41□□□□□ -0.42
SKA1-201ENST00000285116 RUFY3Q7L099 469 aa12.41□□□□□ -0.42
SKA1-201ENST00000285116 TSC1Q92574 1164 aa12.41□□□□□ -0.42
SKA1-201ENST00000285116 JARID2Q92833 1246 aaPredicted RBP12.41□□□□□ -0.42
SKA1-201ENST00000285116 JCADQ9P266 1359 aa12.4□□□□□ -0.42
SKA1-201ENST00000285116 UTYO14607 1347 aa12.4□□□□□ -0.42
SKA1-201ENST00000285116 CCDC171Q6TFL3 1326 aa12.4□□□□□ -0.42
SKA1-201ENST00000285116 STX6O43752 255 aa12.4□□□□□ -0.42
SKA1-201ENST00000285116 AK2P54819 239 aa12.4□□□□□ -0.42
SKA1-201ENST00000285116 USHBP1Q8N6Y0 703 aa12.4□□□□□ -0.42
SKA1-201ENST00000285116 FUCA2Q9BTY2 467 aa12.4□□□□□ -0.42
SKA1-201ENST00000285116 ZSWIM6Q9HCJ5 1215 aa12.4□□□□□ -0.42
SKA1-201ENST00000285116 HYPKQ9NX55 129 aa12.4□□□□□ -0.42
SKA1-201ENST00000285116 ABCC6O95255 1503 aa12.4□□□□□ -0.42
SKA1-201ENST00000285116 SRGAP3O43295 1099 aa12.4□□□□□ -0.42
SKA1-201ENST00000285116 GADD45BO75293 160 aaPredicted RBP12.4□□□□□ -0.42
SKA1-201ENST00000285116 ADCY5O95622 1261 aa12.4□□□□□ -0.42
SKA1-201ENST00000285116 F13A1P00488 732 aa12.4□□□□□ -0.42
SKA1-201ENST00000285116 ATP2B3Q16720 1220 aa12.4□□□□□ -0.42
SKA1-201ENST00000285116 NUTM1Q86Y26 1132 aa12.4□□□□□ -0.42
SKA1-201ENST00000285116 ZNF830Q96NB3 372 aaPredicted RBP12.4□□□□□ -0.42
SKA1-201ENST00000285116 PHAXQ9H814 394 aaKnown RBP12.4□□□□□ -0.42
SKA1-201ENST00000285116 DIAPH3Q9NSV4 1193 aa12.4□□□□□ -0.42
SKA1-201ENST00000285116 USP25Q9UHP3 1055 aa12.4□□□□□ -0.42
SKA1-201ENST00000285116 ZNF142P52746 1687 aaPredicted RBP12.39□□□□□ -0.43
SKA1-201ENST00000285116 ZC3H6P61129 1189 aaKnown RBP12.39□□□□□ -0.43
SKA1-201ENST00000285116 BCL2L12Q9HB09 334 aa12.39□□□□□ -0.43
SKA1-201ENST00000285116 IL1RAPL2Q9NP60 686 aa12.39□□□□□ -0.43
SKA1-201ENST00000285116 SYT1P21579 422 aa12.39□□□□□ -0.43
SKA1-201ENST00000285116 PDCL2Q8N4E4 241 aa12.39□□□□□ -0.43
SKA1-201ENST00000285116 TTC12Q9H892 705 aaPredicted RBP12.39□□□□□ -0.43
SKA1-201ENST00000285116 HIP1O00291 1037 aa12.38□□□□□ -0.43
SKA1-201ENST00000285116 RASEFQ8IZ41 740 aa12.38□□□□□ -0.43
SKA1-201ENST00000285116 CHAF1AQ13111 956 aaPredicted RBP12.38□□□□□ -0.43
SKA1-201ENST00000285116 AKAP4Q5JQC9 854 aa12.38□□□□□ -0.43
SKA1-201ENST00000285116 GPATCH3Q96I76 525 aa12.38□□□□□ -0.43
SKA1-201ENST00000285116 PLEKHG2Q9H7P9 1386 aa12.38□□□□□ -0.43
SKA1-201ENST00000285116 TPM3P06753 285 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms