RNA–Protein interactions for RNA: ENST00000265044.6

SSR3-201, Transcript of signal sequence receptor subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSR3, Length 3,716 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR3-201ENST00000265044 TBC1D9Q6ZT07 1266 aa11.36□□□□□ -0.59
SSR3-201ENST00000265044 DNAJC2Q99543 621 aaKnown RBP11.36□□□□□ -0.59
SSR3-201ENST00000265044 NEURL1BA8MQ27 555 aa11.36□□□□□ -0.59
SSR3-201ENST00000265044 DZIP3Q86Y13 1208 aaKnown RBP11.36□□□□□ -0.59
SSR3-201ENST00000265044 CNNM1Q9NRU3 951 aa11.36□□□□□ -0.59
SSR3-201ENST00000265044 LTN1O94822 1766 aa11.35□□□□□ -0.59
SSR3-201ENST00000265044 SDSP20132 328 aa11.35□□□□□ -0.59
SSR3-201ENST00000265044 UNC5CLQ8IV45 518 aa11.35□□□□□ -0.59
SSR3-201ENST00000265044 HEG1Q9ULI3 1381 aa11.35□□□□□ -0.59
SSR3-201ENST00000265044 FSD1Q9BTV5 496 aa11.35□□□□□ -0.59
SSR3-201ENST00000265044 FGD1P98174 961 aa11.35□□□□□ -0.59
SSR3-201ENST00000265044 HSP90AB3PQ58FF7 597 aa11.35□□□□□ -0.59
SSR3-201ENST00000265044 RUFY2Q8WXA3 655 aa11.35□□□□□ -0.59
SSR3-201ENST00000265044 FAM89AQ96GI7 184 aa11.35□□□□□ -0.59
SSR3-201ENST00000265044 BOLA2Q9H3K6 86 aa11.35□□□□□ -0.59
SSR3-201ENST00000265044 CEP126Q9P2H0 1117 aa11.35□□□□□ -0.59
SSR3-201ENST00000265044 SMARCC1Q92922 1105 aaPredicted RBP11.34□□□□□ -0.59
SSR3-201ENST00000265044 CERKQ8TCT0 537 aa11.34□□□□□ -0.59
SSR3-201ENST00000265044 DLG5Q8TDM6 1919 aa11.34□□□□□ -0.59
SSR3-201ENST00000265044 IFIT5Q13325 482 aaKnown RBP11.33□□□□□ -0.6
SSR3-201ENST00000265044 FRAT2O75474 233 aaPredicted RBP11.33□□□□□ -0.6
SSR3-201ENST00000265044 GLRX3O76003 335 aaKnown RBP11.33□□□□□ -0.6
SSR3-201ENST00000265044 KCNQ4P56696 695 aa11.33□□□□□ -0.6
SSR3-201ENST00000265044 CWC27Q6UX04 472 aaKnown RBP11.33□□□□□ -0.6
SSR3-201ENST00000265044 SSH3Q8TE77 659 aa11.33□□□□□ -0.6
SSR3-201ENST00000265044 ATG3Q9NT62 314 aa11.33□□□□□ -0.6
SSR3-201ENST00000265044 SLIT3O75094 1523 aa11.33□□□□□ -0.6
SSR3-201ENST00000265044 COL5A2P05997 1499 aaPredicted RBP11.33□□□□□ -0.6
SSR3-201ENST00000265044 ST18O60284 1047 aa11.33□□□□□ -0.6
SSR3-201ENST00000265044 ZBTB1Q9Y2K1 713 aa11.32□□□□□ -0.6
SSR3-201ENST00000265044 CAMTA1Q9Y6Y1 1673 aa11.32□□□□□ -0.6
SSR3-201ENST00000265044 MPHOSPH8Q99549 860 aa11.32□□□□□ -0.6
SSR3-201ENST00000265044 ZNF652Q9Y2D9 606 aa11.32□□□□□ -0.6
SSR3-201ENST00000265044 THRAP3Q9Y2W1 955 aaKnown RBP11.32□□□□□ -0.6
SSR3-201ENST00000265044 MED1Q15648 1581 aaPredicted RBP11.32□□□□□ -0.6
SSR3-201ENST00000265044 KDM6AO15550 1401 aaPredicted RBP11.32□□□□□ -0.6
SSR3-201ENST00000265044 ECHDC1Q9NTX5 307 aa11.32□□□□□ -0.6
SSR3-201ENST00000265044 NAP1L2Q9ULW6 460 aaPredicted RBP11.32□□□□□ -0.6
SSR3-201ENST00000265044 OVOS2A0A0G2JMS6 1433 aa11.31□□□□□ -0.6
SSR3-201ENST00000265044 LOC102724428A0A0B4J2F2 783 aa11.31□□□□□ -0.6
SSR3-201ENST00000265044 ZPR1O75312 459 aa11.31□□□□□ -0.6
SSR3-201ENST00000265044 PHF14O94880 888 aa11.31□□□□□ -0.6
SSR3-201ENST00000265044 IGKV5-2P06315 115 aa11.31□□□□□ -0.6
SSR3-201ENST00000265044 SIK1P57059 783 aa11.31□□□□□ -0.6
SSR3-201ENST00000265044 CCDC191Q8NCU4 936 aa11.31□□□□□ -0.6
SSR3-201ENST00000265044 ADCY9O60503 1353 aa11.31□□□□□ -0.6
SSR3-201ENST00000265044 ERBB4Q15303 1308 aa11.31□□□□□ -0.6
SSR3-201ENST00000265044 NBPF26B4DH59 902 aa11.31□□□□□ -0.6
SSR3-201ENST00000265044 METTL24Q5JXM2 366 aa11.31□□□□□ -0.6
SSR3-201ENST00000265044 NBPF14Q5TI25 921 aa11.31□□□□□ -0.6
SSR3-201ENST00000265044 NBPF10Q6P3W6 841 aaKnown RBP11.31□□□□□ -0.6
SSR3-201ENST00000265044 LDHAL6AQ6ZMR3 332 aa11.31□□□□□ -0.6
SSR3-201ENST00000265044 NBPF15Q8N660 670 aa11.31□□□□□ -0.6
SSR3-201ENST00000265044 NIP7Q9Y221 180 aaKnown RBP eCLIP11.31□□□□□ -0.6
SSR3-201ENST00000265044 HSPA1LP34931 641 aa11.3□□□□□ -0.6
SSR3-201ENST00000265044 TBC1D32Q96NH3 1257 aa11.3□□□□□ -0.6
SSR3-201ENST00000265044 SPATA31A1Q5TZJ5 1347 aa11.3□□□□□ -0.6
SSR3-201ENST00000265044 JCADQ9P266 1359 aa11.3□□□□□ -0.6
SSR3-201ENST00000265044 KCNQ2O43526 872 aa11.3□□□□□ -0.6
SSR3-201ENST00000265044 FKBP4Q02790 459 aaKnown RBP eCLIP11.3□□□□□ -0.6
SSR3-201ENST00000265044 TCIRG1Q13488 830 aa11.3□□□□□ -0.6
SSR3-201ENST00000265044 HSP90B1P14625 803 aaKnown RBP11.3□□□□□ -0.6
SSR3-201ENST00000265044 PDIA6Q15084 440 aa11.3□□□□□ -0.6
SSR3-201ENST00000265044 CCDC158Q5M9N0 1113 aa11.3□□□□□ -0.6
SSR3-201ENST00000265044 CCDC87Q9NVE4 849 aa11.3□□□□□ -0.6
SSR3-201ENST00000265044 NKX1-1Q15270 411 aaPredicted RBP11.29□□□□□ -0.6
SSR3-201ENST00000265044 ZNF594Q96JF6 807 aaPredicted RBP11.29□□□□□ -0.6
SSR3-201ENST00000265044 QTRT2Q9H974 415 aaKnown RBP11.29□□□□□ -0.6
SSR3-201ENST00000265044 ANKRD18BA2A2Z9 1011 aa11.29□□□□□ -0.6
SSR3-201ENST00000265044 IRS4O14654 1257 aaPredicted RBP11.29□□□□□ -0.6
SSR3-201ENST00000265044 GSPT1P15170 499 aaKnown RBP11.29□□□□□ -0.6
SSR3-201ENST00000265044 NEK4P51957 841 aa11.29□□□□□ -0.6
SSR3-201ENST00000265044 TAOK2Q9UL54 1235 aa11.29□□□□□ -0.6
SSR3-201ENST00000265044 ZKSCAN1P17029 563 aaPredicted RBP11.28□□□□□ -0.6
SSR3-201ENST00000265044 TFCP2Q12800 502 aa11.28□□□□□ -0.6
SSR3-201ENST00000265044 WASHC4Q2M389 1173 aa11.28□□□□□ -0.6
SSR3-201ENST00000265044 TTC39AQ5SRH9 613 aa11.28□□□□□ -0.6
SSR3-201ENST00000265044 VPS37DQ86XT2 251 aa11.28□□□□□ -0.6
SSR3-201ENST00000265044 MARCH10Q8NA82 808 aaPredicted RBP11.28□□□□□ -0.6
SSR3-201ENST00000265044 CCNL1Q9UK58 526 aaPredicted RBP11.28□□□□□ -0.6
SSR3-201ENST00000265044 TPRNQ4KMQ1 711 aa11.27□□□□□ -0.6
SSR3-201ENST00000265044 AK7Q96M32 723 aa11.27□□□□□ -0.6
SSR3-201ENST00000265044 GNPATO15228 680 aa11.27□□□□□ -0.61
SSR3-201ENST00000265044 CRKLP46109 303 aaKnown RBP11.27□□□□□ -0.61
SSR3-201ENST00000265044 VSIG10Q8N0Z9 540 aa11.27□□□□□ -0.61
SSR3-201ENST00000265044 IBTKQ9P2D0 1353 aaPredicted RBP11.27□□□□□ -0.61
SSR3-201ENST00000265044 HCLS1P14317 486 aaPredicted RBP11.27□□□□□ -0.61
SSR3-201ENST00000265044 TRPC5Q9UL62 973 aaPredicted RBP11.27□□□□□ -0.61
SSR3-201ENST00000265044 AFF2P51816 1311 aa11.27□□□□□ -0.61
SSR3-201ENST00000265044 RFC4P35249 363 aa11.26□□□□□ -0.61
SSR3-201ENST00000265044 TIMM10P62072 90 aa11.26□□□□□ -0.61
SSR3-201ENST00000265044 SPATA31A5Q5VU36 1347 aa11.26□□□□□ -0.61
SSR3-201ENST00000265044 SPATA31A7Q8IWB4 1347 aa11.26□□□□□ -0.61
SSR3-201ENST00000265044 STRCP1A6NGW2 1772 aa11.26□□□□□ -0.61
SSR3-201ENST00000265044 IGHMBP2P38935 993 aaKnown RBP11.26□□□□□ -0.61
SSR3-201ENST00000265044 EPHA10Q5JZY3 1008 aa11.26□□□□□ -0.61
SSR3-201ENST00000265044 SNRKQ9NRH2 765 aa11.26□□□□□ -0.61
SSR3-201ENST00000265044 MAP3K15Q6ZN16 1313 aa11.26□□□□□ -0.61
SSR3-201ENST00000265044 LRRFIP1Q32MZ4 808 aaKnown RBP11.26□□□□□ -0.61
SSR3-201ENST00000265044 GIGYF2Q6Y7W6 1299 aaKnown RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms