RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 SFPQP23246 707 aaKnown RBP eCLIP22.17■■□□□ 1.14
UPF1-201ENST00000262803 EVI5LQ96CN4 794 aa22.17■■□□□ 1.14
UPF1-201ENST00000262803 C8orf76Q96K31 380 aa22.17■■□□□ 1.14
UPF1-201ENST00000262803 CCDC194A0A1B0GVG4 234 aa22.16■■□□□ 1.14
UPF1-201ENST00000262803 UQCRFS1P1P0C7P4 283 aa22.16■■□□□ 1.14
UPF1-201ENST00000262803 HLA-DOAP06340 250 aa22.16■■□□□ 1.14
UPF1-201ENST00000262803 CCDC96Q2M329 555 aa22.16■■□□□ 1.14
UPF1-201ENST00000262803 PIBF1Q8WXW3 757 aa22.16■■□□□ 1.14
UPF1-201ENST00000262803 CABP5Q9NP86 173 aa22.16■■□□□ 1.14
UPF1-201ENST00000262803 FAM83GA6ND36 823 aa22.16■■□□□ 1.14
UPF1-201ENST00000262803 ECHDC1Q9NTX5 307 aa22.16■■□□□ 1.14
UPF1-201ENST00000262803 PIK3R4Q99570 1358 aa22.15■■□□□ 1.14
UPF1-201ENST00000262803 PDE4BQ07343 736 aa22.15■■□□□ 1.14
UPF1-201ENST00000262803 TTC22Q5TAA0 569 aa22.15■■□□□ 1.14
UPF1-201ENST00000262803 GDPD2Q9HCC8 539 aa22.15■■□□□ 1.14
UPF1-201ENST00000262803 ANKRD36BQ8N2N9 1353 aa22.15■■□□□ 1.14
UPF1-201ENST00000262803 UBXN4Q92575 508 aa22.15■■□□□ 1.14
UPF1-201ENST00000262803 LARP6Q9BRS8 491 aaKnown RBP22.15■■□□□ 1.14
UPF1-201ENST00000262803 MINDY4BA8MYZ0 360 aa22.15■■□□□ 1.14
UPF1-201ENST00000262803 HDAC1Q13547 482 aaPredicted RBP22.15■■□□□ 1.14
UPF1-201ENST00000262803 USP25Q9UHP3 1055 aa22.15■■□□□ 1.14
UPF1-201ENST00000262803 MAP9Q49MG5 647 aa22.14■■□□□ 1.13
UPF1-201ENST00000262803 HMG20BQ9P0W2 317 aa22.14■■□□□ 1.13
UPF1-201ENST00000262803 MAPKBP1O60336 1514 aa22.14■■□□□ 1.13
UPF1-201ENST00000262803 GUCY1B3Q02153 619 aa22.14■■□□□ 1.13
UPF1-201ENST00000262803 DDX46Q7L014 1031 aaKnown RBP22.14■■□□□ 1.13
UPF1-201ENST00000262803 PTPN14Q15678 1187 aa22.14■■□□□ 1.13
UPF1-201ENST00000262803 PCDHB15Q9Y5E8 787 aa22.14■■□□□ 1.13
UPF1-201ENST00000262803 USP8P40818 1118 aa22.13■■□□□ 1.13
UPF1-201ENST00000262803 FAM114A1Q8IWE2 563 aa22.13■■□□□ 1.13
UPF1-201ENST00000262803 ZGPATQ8N5A5 531 aaKnown RBP22.13■■□□□ 1.13
UPF1-201ENST00000262803 CWC25Q9NXE8 425 aaPredicted RBP22.13■■□□□ 1.13
UPF1-201ENST00000262803 KANK3Q6NY19 840 aa22.13■■□□□ 1.13
UPF1-201ENST00000262803 CKAP2LQ8IYA6 745 aa22.13■■□□□ 1.13
UPF1-201ENST00000262803 ST5P78524 1137 aa22.12■■□□□ 1.13
UPF1-201ENST00000262803 NEMFO60524 1076 aa22.12■■□□□ 1.13
UPF1-201ENST00000262803 NGLY1Q96IV0 654 aa22.12■■□□□ 1.13
UPF1-201ENST00000262803 PTPRKQ15262 1439 aa22.12■■□□□ 1.13
UPF1-201ENST00000262803 GOLGA8AA7E2F4 631 aa22.12■■□□□ 1.13
UPF1-201ENST00000262803 GOLGA8BA8MQT2 603 aa22.12■■□□□ 1.13
UPF1-201ENST00000262803 USO1O60763 962 aaKnown RBP22.12■■□□□ 1.13
UPF1-201ENST00000262803 NUCB1Q02818 461 aa22.12■■□□□ 1.13
UPF1-201ENST00000262803 INCENPQ9NQS7 918 aa22.12■■□□□ 1.13
UPF1-201ENST00000262803 CACNA2D4Q7Z3S7 1137 aa22.11■■□□□ 1.13
UPF1-201ENST00000262803 CALML4Q96GE6 196 aa22.11■■□□□ 1.13
UPF1-201ENST00000262803 MYO1BO43795 1136 aa22.11■■□□□ 1.13
UPF1-201ENST00000262803 STX6O43752 255 aa22.11■■□□□ 1.13
UPF1-201ENST00000262803 TSHZ3Q63HK5 1081 aa22.11■■□□□ 1.13
UPF1-201ENST00000262803 ARHGAP45Q92619 1136 aa22.11■■□□□ 1.13
UPF1-201ENST00000262803 KRT28Q7Z3Y7 464 aa22.11■■□□□ 1.13
UPF1-201ENST00000262803 BMP15O95972 392 aa22.1■■□□□ 1.13
UPF1-201ENST00000262803 CAVIN2O95810 425 aa22.1■■□□□ 1.13
UPF1-201ENST00000262803 SSR1P43307 286 aaKnown RBP22.1■■□□□ 1.13
UPF1-201ENST00000262803 TEX14Q8IWB6 1497 aa22.1■■□□□ 1.13
UPF1-201ENST00000262803 ANAPC15P60006 121 aa22.1■■□□□ 1.13
UPF1-201ENST00000262803 DDX19AQ9NUU7 478 aaKnown RBP22.1■■□□□ 1.13
UPF1-201ENST00000262803 FOXO3O43524 673 aa22.1■■□□□ 1.13
UPF1-201ENST00000262803 RANBP6O60518 1105 aaKnown RBP22.1■■□□□ 1.13
UPF1-201ENST00000262803 GJB2P29033 226 aa22.1■■□□□ 1.13
UPF1-201ENST00000262803 SMARCC1Q92922 1105 aaPredicted RBP22.1■■□□□ 1.13
UPF1-201ENST00000262803 THOC2Q8NI27 1593 aaKnown RBP22.09■■□□□ 1.13
UPF1-201ENST00000262803 NLRP5P59047 1200 aa22.09■■□□□ 1.13
UPF1-201ENST00000262803 CLIP2Q9UDT6 1046 aa22.09■■□□□ 1.13
UPF1-201ENST00000262803 GPATCH8Q9UKJ3 1502 aaKnown RBP22.09■■□□□ 1.13
UPF1-201ENST00000262803 KLHL40Q2TBA0 621 aa22.09■■□□□ 1.13
UPF1-201ENST00000262803 TCP11L1Q9NUJ3 509 aa22.09■■□□□ 1.13
UPF1-201ENST00000262803 RALGAPBQ86X10 1494 aa22.09■■□□□ 1.13
UPF1-201ENST00000262803 IFIT3O14879 490 aaKnown RBP22.09■■□□□ 1.13
UPF1-201ENST00000262803 TFIP11Q9UBB9 837 aaKnown RBP22.09■■□□□ 1.13
UPF1-201ENST00000262803 KIF5CO60282 957 aa22.09■■□□□ 1.13
UPF1-201ENST00000262803 ZFYP08048 801 aaPredicted RBP22.08■■□□□ 1.13
UPF1-201ENST00000262803 FERMT1Q9BQL6 677 aa22.08■■□□□ 1.13
UPF1-201ENST00000262803 MAP3K2Q9Y2U5 619 aa22.08■■□□□ 1.13
UPF1-201ENST00000262803 MSH6P52701 1360 aa22.08■■□□□ 1.13
UPF1-201ENST00000262803 TTLL12Q14166 644 aaPredicted RBP22.08■■□□□ 1.12
UPF1-201ENST00000262803 PI4KAP2A4QPH2 592 aa22.08■■□□□ 1.12
UPF1-201ENST00000262803 SNRPA1P09661 255 aaKnown RBP22.08■■□□□ 1.12
UPF1-201ENST00000262803 CCT2P78371 535 aaKnown RBP22.08■■□□□ 1.12
UPF1-201ENST00000262803 PI4KAP1Q8N8J0 262 aa22.08■■□□□ 1.12
UPF1-201ENST00000262803 KIF18AQ8NI77 898 aa22.08■■□□□ 1.12
UPF1-201ENST00000262803 YEATS4O95619 227 aa22.07■■□□□ 1.12
UPF1-201ENST00000262803 KLHL10Q6JEL2 608 aa22.07■■□□□ 1.12
UPF1-201ENST00000262803 TAX1BP1Q86VP1 789 aa22.07■■□□□ 1.12
UPF1-201ENST00000262803 CCDC152Q4G0S7 254 aa22.07■■□□□ 1.12
UPF1-201ENST00000262803 TAOK3Q9H2K8 898 aa22.07■■□□□ 1.12
UPF1-201ENST00000262803 FBLN1P23142 703 aa22.07■■□□□ 1.12
UPF1-201ENST00000262803 DDX12PQ92771 950 aa22.07■■□□□ 1.12
UPF1-201ENST00000262803 CCDC82Q8N4S0 544 aa22.06■■□□□ 1.12
UPF1-201ENST00000262803 CRNKL1Q9BZJ0 848 aaKnown RBP22.06■■□□□ 1.12
UPF1-201ENST00000262803 USP37Q86T82 979 aa22.06■■□□□ 1.12
UPF1-201ENST00000262803 POTEB2H3BUK9 544 aa22.06■■□□□ 1.12
UPF1-201ENST00000262803 CCDC172P0C7W6 258 aa22.06■■□□□ 1.12
UPF1-201ENST00000262803 FSIP1Q8NA03 581 aa22.06■■□□□ 1.12
UPF1-201ENST00000262803 SDSP20132 328 aa22.06■■□□□ 1.12
UPF1-201ENST00000262803 GOLGA6L9A6NEM1 432 aa22.05■■□□□ 1.12
UPF1-201ENST00000262803 KAT14Q9H8E8 782 aa22.05■■□□□ 1.12
UPF1-201ENST00000262803 ASXL1Q8IXJ9 1541 aa22.05■■□□□ 1.12
UPF1-201ENST00000262803 TOP1P11387 765 aaKnown RBP22.05■■□□□ 1.12
UPF1-201ENST00000262803 TMTC2Q8N394 836 aa22.05■■□□□ 1.12
UPF1-201ENST00000262803 FEZ1Q99689 392 aa22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms