RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 IL2RBP14784 551 aa15.84■□□□□ 0.13
SPTLC1-201ENST00000262554 COPS6Q7L5N1 327 aa15.84■□□□□ 0.13
SPTLC1-201ENST00000262554 NUTM1Q86Y26 1132 aa15.84■□□□□ 0.13
SPTLC1-201ENST00000262554 RBM42Q9BTD8 480 aaKnown RBP15.84■□□□□ 0.13
SPTLC1-201ENST00000262554 HSP90AA1P07900 732 aaKnown RBP15.83■□□□□ 0.12
SPTLC1-201ENST00000262554 USP16Q9Y5T5 823 aa15.83■□□□□ 0.12
SPTLC1-201ENST00000262554 ERVV-2B6SEH9 535 aa15.82■□□□□ 0.12
SPTLC1-201ENST00000262554 EVA1CP58658 441 aa15.82■□□□□ 0.12
SPTLC1-201ENST00000262554 ERC1Q8IUD2 1116 aa15.82■□□□□ 0.12
SPTLC1-201ENST00000262554 ESYT1Q9BSJ8 1104 aa15.82■□□□□ 0.12
SPTLC1-201ENST00000262554 METTL22Q9BUU2 404 aaPredicted RBP15.82■□□□□ 0.12
SPTLC1-201ENST00000262554 AFDNP55196 1824 aaKnown RBP15.82■□□□□ 0.12
SPTLC1-201ENST00000262554 CD2BP2O95400 341 aaKnown RBP15.82■□□□□ 0.12
SPTLC1-201ENST00000262554 IGKV5-2P06315 115 aa15.82■□□□□ 0.12
SPTLC1-201ENST00000262554 CHMLP26374 656 aa15.82■□□□□ 0.12
SPTLC1-201ENST00000262554 GSE1Q14687 1217 aa15.82■□□□□ 0.12
SPTLC1-201ENST00000262554 ANKRD13DQ6ZTN6 518 aa15.82■□□□□ 0.12
SPTLC1-201ENST00000262554 CIZ1Q9ULV3 898 aaPredicted RBP15.82■□□□□ 0.12
SPTLC1-201ENST00000262554 UBR2Q8IWV8 1755 aa15.82■□□□□ 0.12
SPTLC1-201ENST00000262554 NEURL1BA8MQ27 555 aa15.81■□□□□ 0.12
SPTLC1-201ENST00000262554 DDIT3P35638 169 aa15.81■□□□□ 0.12
SPTLC1-201ENST00000262554 SUCLG2Q96I99 432 aa15.81■□□□□ 0.12
SPTLC1-201ENST00000262554 STRN4Q9NRL3 753 aa15.81■□□□□ 0.12
SPTLC1-201ENST00000262554 GLI3P10071 1580 aa15.81■□□□□ 0.12
SPTLC1-201ENST00000262554 SHANK3Q9BYB0 1731 aa15.81■□□□□ 0.12
SPTLC1-201ENST00000262554 ARFGEF2Q9Y6D5 1785 aa15.81■□□□□ 0.12
SPTLC1-201ENST00000262554 NKX1-1Q15270 411 aaPredicted RBP15.8■□□□□ 0.12
SPTLC1-201ENST00000262554 LRP10Q7Z4F1 713 aa15.8■□□□□ 0.12
SPTLC1-201ENST00000262554 CLASRPQ8N2M8 674 aaKnown RBP15.8■□□□□ 0.12
SPTLC1-201ENST00000262554 MYD88Q99836 296 aa15.8■□□□□ 0.12
SPTLC1-201ENST00000262554 MCCP23508 829 aa15.8■□□□□ 0.12
SPTLC1-201ENST00000262554 C1QBPQ07021 282 aaKnown RBP15.8■□□□□ 0.12
SPTLC1-201ENST00000262554 GCKRQ14397 625 aa15.8■□□□□ 0.12
SPTLC1-201ENST00000262554 PI4K2BQ8TCG2 481 aa15.8■□□□□ 0.12
SPTLC1-201ENST00000262554 BICC1Q9H694 974 aaKnown RBP15.8■□□□□ 0.12
SPTLC1-201ENST00000262554 ERBB4Q15303 1308 aa15.8■□□□□ 0.12
SPTLC1-201ENST00000262554 TTC41PQ6P2S7 1318 aa15.8■□□□□ 0.12
SPTLC1-201ENST00000262554 PAPPAQ13219 1627 aa15.79■□□□□ 0.12
SPTLC1-201ENST00000262554 ST18O60284 1047 aa15.79■□□□□ 0.12
SPTLC1-201ENST00000262554 USP42Q9H9J4 1324 aaKnown RBP15.79■□□□□ 0.12
SPTLC1-201ENST00000262554 UNC5CLQ8IV45 518 aa15.78■□□□□ 0.12
SPTLC1-201ENST00000262554 CNTROBQ8N137 903 aa15.78■□□□□ 0.12
SPTLC1-201ENST00000262554 GPATCH3Q96I76 525 aa15.78■□□□□ 0.12
SPTLC1-201ENST00000262554 KAZALD1Q96I82 304 aa15.78■□□□□ 0.12
SPTLC1-201ENST00000262554 G3BP1Q13283 466 aaKnown RBP eCLIP15.78■□□□□ 0.12
SPTLC1-201ENST00000262554 DDX54Q8TDD1 881 aaKnown RBP15.78■□□□□ 0.12
SPTLC1-201ENST00000262554 PA2G4Q9UQ80 394 aaKnown RBP15.78■□□□□ 0.12
SPTLC1-201ENST00000262554 GLRX3O76003 335 aaKnown RBP15.77■□□□□ 0.11
SPTLC1-201ENST00000262554 PIP4K2AP48426 406 aaPredicted RBP15.77■□□□□ 0.11
SPTLC1-201ENST00000262554 PLBD2Q8NHP8 589 aa15.77■□□□□ 0.11
SPTLC1-201ENST00000262554 EPB41L2O43491 1005 aaKnown RBP15.76■□□□□ 0.11
SPTLC1-201ENST00000262554 IFIT2P09913 472 aaKnown RBP15.76■□□□□ 0.11
SPTLC1-201ENST00000262554 MCM4P33991 863 aa15.76■□□□□ 0.11
SPTLC1-201ENST00000262554 ANO2Q9NQ90 1003 aa15.76■□□□□ 0.11
SPTLC1-201ENST00000262554 KCPQ6ZWJ8 1503 aa15.76■□□□□ 0.11
SPTLC1-201ENST00000262554 ECHDC1Q9NTX5 307 aa15.76■□□□□ 0.11
SPTLC1-201ENST00000262554 MAP4K4O95819 1239 aaPredicted RBP15.75■□□□□ 0.11
SPTLC1-201ENST00000262554 ANAPC15P60006 121 aa15.75■□□□□ 0.11
SPTLC1-201ENST00000262554 AACSQ86V21 672 aa15.74■□□□□ 0.11
SPTLC1-201ENST00000262554 COL15A1P39059 1388 aa15.74■□□□□ 0.11
SPTLC1-201ENST00000262554 COL14A1Q05707 1796 aaKnown RBP15.74■□□□□ 0.11
SPTLC1-201ENST00000262554 NUP188Q5SRE5 1749 aa15.73■□□□□ 0.11
SPTLC1-201ENST00000262554 TOGARAM1Q9Y4F4 1720 aa15.73■□□□□ 0.11
SPTLC1-201ENST00000262554 NBPF26B4DH59 902 aa15.73■□□□□ 0.11
SPTLC1-201ENST00000262554 CAPN15O75808 1086 aa15.73■□□□□ 0.11
SPTLC1-201ENST00000262554 SASH1O94885 1247 aa15.73■□□□□ 0.11
SPTLC1-201ENST00000262554 RAB3GAP1Q15042 981 aa15.73■□□□□ 0.11
SPTLC1-201ENST00000262554 NBPF14Q5TI25 921 aa15.73■□□□□ 0.11
SPTLC1-201ENST00000262554 NBPF10Q6P3W6 841 aaKnown RBP15.73■□□□□ 0.11
SPTLC1-201ENST00000262554 NBPF15Q8N660 670 aa15.73■□□□□ 0.11
SPTLC1-201ENST00000262554 TNS2Q63HR2 1409 aa15.73■□□□□ 0.11
SPTLC1-201ENST00000262554 DDX11L8A8MPP1 907 aa15.72■□□□□ 0.11
SPTLC1-201ENST00000262554 UBE3BQ7Z3V4 1068 aa15.72■□□□□ 0.11
SPTLC1-201ENST00000262554 BTG4Q9NY30 223 aa15.72■□□□□ 0.11
SPTLC1-201ENST00000262554 ROBO1Q9Y6N7 1651 aa15.72■□□□□ 0.11
SPTLC1-201ENST00000262554 A0A087WZG4 1122 aa15.71■□□□□ 0.11
SPTLC1-201ENST00000262554 ATP5J2-PTCD1G3V325 749 aa15.71■□□□□ 0.11
SPTLC1-201ENST00000262554 PTCD1O75127 700 aaKnown RBP15.71■□□□□ 0.11
SPTLC1-201ENST00000262554 EPHA10Q5JZY3 1008 aa15.71■□□□□ 0.11
SPTLC1-201ENST00000262554 TNPO1Q92973 898 aaKnown RBP15.71■□□□□ 0.11
SPTLC1-201ENST00000262554 GBP4Q96PP9 640 aa15.71■□□□□ 0.11
SPTLC1-201ENST00000262554 SIL1Q9H173 461 aa15.71■□□□□ 0.11
SPTLC1-201ENST00000262554 TMOD3Q9NYL9 352 aa15.71■□□□□ 0.11
SPTLC1-201ENST00000262554 SGSM2O43147 1006 aa15.71■□□□□ 0.11
SPTLC1-201ENST00000262554 MCM2P49736 904 aa15.71■□□□□ 0.11
SPTLC1-201ENST00000262554 NEK4P51957 841 aa15.71■□□□□ 0.11
SPTLC1-201ENST00000262554 RUFY2Q8WXA3 655 aa15.71■□□□□ 0.11
SPTLC1-201ENST00000262554 IL27Q8NEV9 243 aa15.7■□□□□ 0.1
SPTLC1-201ENST00000262554 IL17RAQ96F46 866 aa15.7■□□□□ 0.1
SPTLC1-201ENST00000262554 CWC22Q9HCG8 908 aaKnown RBP15.7■□□□□ 0.1
SPTLC1-201ENST00000262554 COPRSQ9NQ92 184 aa15.7■□□□□ 0.1
SPTLC1-201ENST00000262554 DIAPH3Q9NSV4 1193 aa15.7■□□□□ 0.1
SPTLC1-201ENST00000262554 COL22A1Q8NFW1 1626 aaPredicted RBP15.7■□□□□ 0.1
SPTLC1-201ENST00000262554 A1BGP04217 495 aa15.69■□□□□ 0.1
SPTLC1-201ENST00000262554 RABL6Q3YEC7 729 aaPredicted RBP15.69■□□□□ 0.1
SPTLC1-201ENST00000262554 KIAA1211Q6ZU35 1233 aa15.69■□□□□ 0.1
SPTLC1-201ENST00000262554 EAF2Q96CJ1 260 aaPredicted RBP15.69■□□□□ 0.1
SPTLC1-201ENST00000262554 EVI5LQ96CN4 794 aa15.69■□□□□ 0.1
SPTLC1-201ENST00000262554 AHDC1Q5TGY3 1603 aaPredicted RBP15.69■□□□□ 0.1
SPTLC1-201ENST00000262554 HSPA4P34932 840 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms