RNA–Protein interactions for RNA: ENST00000261726.10

CUX2-201, Transcript of cut like homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CUX2, Length 6,844 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-201ENST00000261726 GOLGA8AA7E2F4 631 aa16.5■□□□□ 0.23
CUX2-201ENST00000261726 GOLGA8BA8MQT2 603 aa16.5■□□□□ 0.23
CUX2-201ENST00000261726 CCDC40Q4G0X9 1142 aa16.5■□□□□ 0.23
CUX2-201ENST00000261726 CCDC8Q9H0W5 538 aaPredicted RBP16.5■□□□□ 0.23
CUX2-201ENST00000261726 ZNF213O14771 459 aa16.5■□□□□ 0.23
CUX2-201ENST00000261726 IQCA1Q86XH1 822 aa16.5■□□□□ 0.23
CUX2-201ENST00000261726 TMOD3Q9NYL9 352 aa16.5■□□□□ 0.23
CUX2-201ENST00000261726 LMAN1P49257 510 aa16.5■□□□□ 0.23
CUX2-201ENST00000261726 ISM2Q6H9L7 571 aa16.5■□□□□ 0.23
CUX2-201ENST00000261726 ZSCAN30Q86W11 494 aa16.49■□□□□ 0.23
CUX2-201ENST00000261726 DDX23Q9BUQ8 820 aaKnown RBP16.49■□□□□ 0.23
CUX2-201ENST00000261726 MAP3K12Q12852 859 aa16.49■□□□□ 0.23
CUX2-201ENST00000261726 MICALCLQ6ZW33 695 aa16.49■□□□□ 0.23
CUX2-201ENST00000261726 RPAP2Q8IXW5 612 aaPredicted RBP16.49■□□□□ 0.23
CUX2-201ENST00000261726 THEMISQ8N1K5 641 aaPredicted RBP16.49■□□□□ 0.23
CUX2-201ENST00000261726 EHMT1Q9H9B1 1298 aa16.49■□□□□ 0.23
CUX2-201ENST00000261726 WDR62O43379 1518 aa16.49■□□□□ 0.23
CUX2-201ENST00000261726 IFIT3O14879 490 aaKnown RBP16.49■□□□□ 0.23
CUX2-201ENST00000261726 FERP16591 822 aa16.49■□□□□ 0.23
CUX2-201ENST00000261726 ZFP91Q96JP5 570 aaPredicted RBP16.49■□□□□ 0.23
CUX2-201ENST00000261726 ALS2CR12Q96Q35 445 aa16.49■□□□□ 0.23
CUX2-201ENST00000261726 C16orf45Q96MC5 204 aaPredicted RBP16.49■□□□□ 0.23
CUX2-201ENST00000261726 ABCA5Q8WWZ7 1642 aa16.49■□□□□ 0.23
CUX2-201ENST00000261726 CTR9Q6PD62 1173 aa16.49■□□□□ 0.23
CUX2-201ENST00000261726 ANKRD30BQ9BXX2 1392 aa16.49■□□□□ 0.23
CUX2-201ENST00000261726 BAG4O95429 457 aaKnown RBP16.48■□□□□ 0.23
CUX2-201ENST00000261726 RBM25P49756 843 aaKnown RBP16.48■□□□□ 0.23
CUX2-201ENST00000261726 DUSP27Q5VZP5 1158 aa16.48■□□□□ 0.23
CUX2-201ENST00000261726 SYCP3Q8IZU3 236 aa16.48■□□□□ 0.23
CUX2-201ENST00000261726 THUMPD2Q9BTF0 503 aaKnown RBP16.48■□□□□ 0.23
CUX2-201ENST00000261726 SAMM50Q9Y512 469 aa16.48■□□□□ 0.23
CUX2-201ENST00000261726 GLRX3O76003 335 aaKnown RBP16.48■□□□□ 0.23
CUX2-201ENST00000261726 TMC6Q7Z403 805 aa16.48■□□□□ 0.23
CUX2-201ENST00000261726 PLCD3Q8N3E9 789 aa16.48■□□□□ 0.23
CUX2-201ENST00000261726 FSD2A1L4K1 749 aa16.48■□□□□ 0.23
CUX2-201ENST00000261726 ANKRD18BA2A2Z9 1011 aa16.48■□□□□ 0.23
CUX2-201ENST00000261726 PANK2Q9BZ23 570 aa16.48■□□□□ 0.23
CUX2-201ENST00000261726 TROQ12816 1431 aaPredicted RBP16.48■□□□□ 0.23
CUX2-201ENST00000261726 RPGRQ92834 1020 aaKnown RBP16.48■□□□□ 0.23
CUX2-201ENST00000261726 TSNARE1Q96NA8 513 aa16.48■□□□□ 0.23
CUX2-201ENST00000261726 SLC5A1P13866 664 aa16.47■□□□□ 0.23
CUX2-201ENST00000261726 IDEP14735 1019 aa16.47■□□□□ 0.23
CUX2-201ENST00000261726 FSIP1Q8NA03 581 aa16.47■□□□□ 0.23
CUX2-201ENST00000261726 FAM107BQ9H098 131 aa16.47■□□□□ 0.23
CUX2-201ENST00000261726 IPO4Q8TEX9 1081 aaKnown RBP16.47■□□□□ 0.23
CUX2-201ENST00000261726 CETN1Q12798 172 aa16.47■□□□□ 0.23
CUX2-201ENST00000261726 USHBP1Q8N6Y0 703 aa16.47■□□□□ 0.23
CUX2-201ENST00000261726 RAB11FIP3O75154 756 aa16.47■□□□□ 0.23
CUX2-201ENST00000261726 CATIPQ7Z7H3 387 aa16.47■□□□□ 0.23
CUX2-201ENST00000261726 GPATCH11Q8N954 259 aa16.47■□□□□ 0.23
CUX2-201ENST00000261726 SMARCC1Q92922 1105 aaPredicted RBP16.47■□□□□ 0.23
CUX2-201ENST00000261726 SCAND2PQ9GZW5 306 aaPredicted RBP16.47■□□□□ 0.23
CUX2-201ENST00000261726 MAP3K1Q13233 1512 aa16.47■□□□□ 0.23
CUX2-201ENST00000261726 MYO1BO43795 1136 aa16.47■□□□□ 0.23
CUX2-201ENST00000261726 IFIT5Q13325 482 aaKnown RBP16.47■□□□□ 0.23
CUX2-201ENST00000261726 PPP1R14CQ8TAE6 165 aa16.47■□□□□ 0.23
CUX2-201ENST00000261726 CALML4Q96GE6 196 aa16.47■□□□□ 0.23
CUX2-201ENST00000261726 GTF2F1P35269 517 aaKnown RBP eCLIP16.46■□□□□ 0.23
CUX2-201ENST00000261726 NAA15Q9BXJ9 866 aaKnown RBP16.46■□□□□ 0.23
CUX2-201ENST00000261726 RRP9O43818 475 aaKnown RBP16.46■□□□□ 0.23
CUX2-201ENST00000261726 ZNF354CQ86Y25 554 aa16.46■□□□□ 0.23
CUX2-201ENST00000261726 A0A087WZG4 1122 aa16.46■□□□□ 0.23
CUX2-201ENST00000261726 PPFIA3O75145 1194 aa16.46■□□□□ 0.23
CUX2-201ENST00000261726 KIF20AO95235 890 aa16.46■□□□□ 0.23
CUX2-201ENST00000261726 FEZ1Q99689 392 aa16.46■□□□□ 0.23
CUX2-201ENST00000261726 ATP2C2O75185 946 aa16.46■□□□□ 0.23
CUX2-201ENST00000261726 CGNQ9P2M7 1197 aaKnown RBP16.46■□□□□ 0.23
CUX2-201ENST00000261726 USP25Q9UHP3 1055 aa16.46■□□□□ 0.23
CUX2-201ENST00000261726 PDIA4P13667 645 aaKnown RBP16.46■□□□□ 0.22
CUX2-201ENST00000261726 ARL1P40616 181 aaPredicted RBP16.46■□□□□ 0.22
CUX2-201ENST00000261726 MRPS9P82933 396 aaKnown RBP16.45■□□□□ 0.22
CUX2-201ENST00000261726 NFE2L2Q16236 605 aa16.45■□□□□ 0.22
CUX2-201ENST00000261726 RAB11FIP4Q86YS3 637 aa16.45■□□□□ 0.22
CUX2-201ENST00000261726 TRMT112Q9UI30 125 aaKnown RBP16.45■□□□□ 0.22
CUX2-201ENST00000261726 GIGYF2Q6Y7W6 1299 aaKnown RBP16.45■□□□□ 0.22
CUX2-201ENST00000261726 BICD1Q96G01 975 aa16.45■□□□□ 0.22
CUX2-201ENST00000261726 JADE2Q9NQC1 790 aa16.45■□□□□ 0.22
CUX2-201ENST00000261726 MPRIPQ6WCQ1 1025 aa16.45■□□□□ 0.22
CUX2-201ENST00000261726 SSX2IPQ9Y2D8 614 aa16.45■□□□□ 0.22
CUX2-201ENST00000261726 ZSWIM4Q9H7M6 989 aa16.45■□□□□ 0.22
CUX2-201ENST00000261726 IKBKGQ9Y6K9 419 aa16.44■□□□□ 0.22
CUX2-201ENST00000261726 THOC2Q8NI27 1593 aaKnown RBP16.44■□□□□ 0.22
CUX2-201ENST00000261726 RAPGEF6Q8TEU7 1601 aa16.44■□□□□ 0.22
CUX2-201ENST00000261726 GDPD2Q9HCC8 539 aa16.43■□□□□ 0.22
CUX2-201ENST00000261726 PAIP2Q9BPZ3 127 aaKnown RBP16.43■□□□□ 0.22
CUX2-201ENST00000261726 SH2B1Q9NRF2 756 aaPredicted RBP16.43■□□□□ 0.22
CUX2-201ENST00000261726 TCP11L1Q9NUJ3 509 aa16.43■□□□□ 0.22
CUX2-201ENST00000261726 TFIP11Q9UBB9 837 aaKnown RBP16.43■□□□□ 0.22
CUX2-201ENST00000261726 HMGB1P09429 215 aaKnown RBP16.43■□□□□ 0.22
CUX2-201ENST00000261726 TMPOP42166 694 aaKnown RBP16.43■□□□□ 0.22
CUX2-201ENST00000261726 APBB1IPQ7Z5R6 666 aaPredicted RBP16.43■□□□□ 0.22
CUX2-201ENST00000261726 CFAP43Q8NDM7 1665 aa16.43■□□□□ 0.22
CUX2-201ENST00000261726 A0A1W2PRG0 241 aa16.42■□□□□ 0.22
CUX2-201ENST00000261726 C6orf229H3BNL8 230 aa16.42■□□□□ 0.22
CUX2-201ENST00000261726 SSFA2P28290 1259 aa16.42■□□□□ 0.22
CUX2-201ENST00000261726 RGS22Q8NE09 1264 aa16.42■□□□□ 0.22
CUX2-201ENST00000261726 FCHSD2O94868 740 aa16.42■□□□□ 0.22
CUX2-201ENST00000261726 AMPD3Q01432 767 aa16.42■□□□□ 0.22
CUX2-201ENST00000261726 ANKLE2Q86XL3 938 aa16.42■□□□□ 0.22
CUX2-201ENST00000261726 SRRTQ9BXP5 876 aaKnown RBP16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms