RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 RSPH6AQ9H0K4 717 aa13.88□□□□□ -0.19
VPS50-201ENST00000251739 FER1L6Q2WGJ9 1857 aa13.88□□□□□ -0.19
VPS50-201ENST00000251739 LAMB4A4D0S4 1761 aa13.87□□□□□ -0.19
VPS50-201ENST00000251739 STARD3NLO95772 234 aa13.87□□□□□ -0.19
VPS50-201ENST00000251739 TEFQ10587 303 aa13.87□□□□□ -0.19
VPS50-201ENST00000251739 TTC5Q8N0Z6 440 aa13.87□□□□□ -0.19
VPS50-201ENST00000251739 NMRK2Q9NPI5 230 aa13.87□□□□□ -0.19
VPS50-201ENST00000251739 TOMM70O94826 608 aa13.86□□□□□ -0.19
VPS50-201ENST00000251739 SERPINB2P05120 415 aa13.86□□□□□ -0.19
VPS50-201ENST00000251739 PRKAR2BP31323 418 aa13.86□□□□□ -0.19
VPS50-201ENST00000251739 CACNA1SQ13698 1873 aa13.86□□□□□ -0.19
VPS50-201ENST00000251739 CANXP27824 592 aaKnown RBP13.85□□□□□ -0.19
VPS50-201ENST00000251739 TEX13AQ9BXU3 409 aaPredicted RBP13.85□□□□□ -0.19
VPS50-201ENST00000251739 KDM3BQ7LBC6 1761 aa13.85□□□□□ -0.19
VPS50-201ENST00000251739 ZC3H4Q9UPT8 1303 aaKnown RBP13.85□□□□□ -0.19
VPS50-201ENST00000251739 A0A087WZG4 1122 aa13.84□□□□□ -0.19
VPS50-201ENST00000251739 PPP2R1AP30153 589 aa13.84□□□□□ -0.19
VPS50-201ENST00000251739 IL6STP40189 918 aaPredicted RBP13.84□□□□□ -0.19
VPS50-201ENST00000251739 PRELPP51888 382 aa13.84□□□□□ -0.19
VPS50-201ENST00000251739 KCNQ3O43525 872 aa13.83□□□□□ -0.2
VPS50-201ENST00000251739 CFAP53Q96M91 514 aa13.83□□□□□ -0.2
VPS50-201ENST00000251739 FMNL2Q96PY5 1086 aa13.83□□□□□ -0.2
VPS50-201ENST00000251739 RNF181Q9P0P0 153 aa13.83□□□□□ -0.2
VPS50-201ENST00000251739 SLX4Q8IY92 1834 aa13.83□□□□□ -0.2
VPS50-201ENST00000251739 CAMTA2O94983 1202 aa13.82□□□□□ -0.2
VPS50-201ENST00000251739 RASSF7Q02833 373 aa13.82□□□□□ -0.2
VPS50-201ENST00000251739 CNGB1Q14028 1251 aaPredicted RBP13.82□□□□□ -0.2
VPS50-201ENST00000251739 TBC1D9BQ66K14 1250 aa13.82□□□□□ -0.2
VPS50-201ENST00000251739 RBM46Q8TBY0 533 aaKnown RBP13.82□□□□□ -0.2
VPS50-201ENST00000251739 NFKBIEO00221 500 aa13.81□□□□□ -0.2
VPS50-201ENST00000251739 APLP1P51693 650 aa13.81□□□□□ -0.2
VPS50-201ENST00000251739 EVX2Q03828 476 aa13.81□□□□□ -0.2
VPS50-201ENST00000251739 PRR5LQ6MZQ0 368 aa13.81□□□□□ -0.2
VPS50-201ENST00000251739 C2CD5Q86YS7 1000 aa13.81□□□□□ -0.2
VPS50-201ENST00000251739 TTLL6Q8N841 843 aa13.81□□□□□ -0.2
VPS50-201ENST00000251739 KDM2BQ8NHM5 1336 aa13.81□□□□□ -0.2
VPS50-201ENST00000251739 BTBD11A6QL63 1104 aa13.8□□□□□ -0.2
VPS50-201ENST00000251739 A1BGP04217 495 aa13.8□□□□□ -0.2
VPS50-201ENST00000251739 LMNB1P20700 586 aa13.8□□□□□ -0.2
VPS50-201ENST00000251739 DNAJC5GQ8N7S2 189 aa13.8□□□□□ -0.2
VPS50-201ENST00000251739 BRIP1Q9BX63 1249 aa13.8□□□□□ -0.2
VPS50-201ENST00000251739 TBC1D2BQ9UPU7 963 aa13.8□□□□□ -0.2
VPS50-201ENST00000251739 NUDCQ9Y266 331 aa13.8□□□□□ -0.2
VPS50-201ENST00000251739 H0YIN7 160 aa13.79□□□□□ -0.2
VPS50-201ENST00000251739 BICDL1Q6ZP65 573 aa13.79□□□□□ -0.2
VPS50-201ENST00000251739 ZNF579Q8NAF0 562 aaKnown RBP13.79□□□□□ -0.2
VPS50-201ENST00000251739 PDZRN3Q9UPQ7 1066 aa13.79□□□□□ -0.2
VPS50-201ENST00000251739 PCNTO95613 3336 aa13.79□□□□□ -0.2
VPS50-201ENST00000251739 PRAMEF22A3QJZ6 481 aa13.78□□□□□ -0.2
VPS50-201ENST00000251739 HTATSF1O43719 755 aaKnown RBP13.78□□□□□ -0.2
VPS50-201ENST00000251739 U2AF1L5P0DN76 240 aaPredicted RBP13.78□□□□□ -0.2
VPS50-201ENST00000251739 CHRM1P11229 460 aaPredicted RBP13.78□□□□□ -0.2
VPS50-201ENST00000251739 U2AF1Q01081 240 aaKnown RBP eCLIP13.78□□□□□ -0.2
VPS50-201ENST00000251739 MCM10Q7L590 875 aa13.78□□□□□ -0.2
VPS50-201ENST00000251739 USP16Q9Y5T5 823 aa13.78□□□□□ -0.2
VPS50-201ENST00000251739 NUP98P52948 1817 aa13.78□□□□□ -0.2
VPS50-201ENST00000251739 RGL2O15211 777 aa13.77□□□□□ -0.21
VPS50-201ENST00000251739 PDE6BP35913 854 aa13.77□□□□□ -0.21
VPS50-201ENST00000251739 FSTL1Q12841 308 aa13.77□□□□□ -0.21
VPS50-201ENST00000251739 ZNF330Q9Y3S2 320 aaPredicted RBP13.77□□□□□ -0.21
VPS50-201ENST00000251739 LTBP3Q9NS15 1303 aa13.76□□□□□ -0.21
VPS50-201ENST00000251739 NBPF26B4DH59 902 aa13.76□□□□□ -0.21
VPS50-201ENST00000251739 ECM2O94769 699 aaPredicted RBP13.76□□□□□ -0.21
VPS50-201ENST00000251739 SNRPA1P09661 255 aaKnown RBP13.76□□□□□ -0.21
VPS50-201ENST00000251739 NBPF10Q6P3W6 841 aaKnown RBP13.76□□□□□ -0.21
VPS50-201ENST00000251739 CLEC4GQ6UXB4 293 aa13.76□□□□□ -0.21
VPS50-201ENST00000251739 DZIP3Q86Y13 1208 aaKnown RBP13.76□□□□□ -0.21
VPS50-201ENST00000251739 NBPF15Q8N660 670 aa13.76□□□□□ -0.21
VPS50-201ENST00000251739 CNBD1Q8NA66 436 aa13.76□□□□□ -0.21
VPS50-201ENST00000251739 GLTPD2A6NH11 291 aa13.75□□□□□ -0.21
VPS50-201ENST00000251739 PIP4K2AP48426 406 aaPredicted RBP13.75□□□□□ -0.21
VPS50-201ENST00000251739 DCTN1Q14203 1278 aa13.75□□□□□ -0.21
VPS50-201ENST00000251739 CCDC24Q8N4L8 307 aa13.75□□□□□ -0.21
VPS50-201ENST00000251739 SETDB2Q96T68 719 aa13.75□□□□□ -0.21
VPS50-201ENST00000251739 RRAGCQ9HB90 399 aa13.75□□□□□ -0.21
VPS50-201ENST00000251739 SRGNP10124 158 aa13.74□□□□□ -0.21
VPS50-201ENST00000251739 PYGBP11216 843 aa13.74□□□□□ -0.21
VPS50-201ENST00000251739 IFFO2Q5TF58 517 aa13.74□□□□□ -0.21
VPS50-201ENST00000251739 STYK1Q6J9G0 422 aa13.74□□□□□ -0.21
VPS50-201ENST00000251739 RTF1Q92541 710 aaKnown RBP13.74□□□□□ -0.21
VPS50-201ENST00000251739 KLRG2A4D1S0 409 aaPredicted RBP13.73□□□□□ -0.21
VPS50-201ENST00000251739 C16orf71Q8IYS4 520 aaPredicted RBP13.73□□□□□ -0.21
VPS50-201ENST00000251739 PLEKHF1Q96S99 279 aa13.73□□□□□ -0.21
VPS50-201ENST00000251739 SCN4AP35499 1836 aa13.72□□□□□ -0.21
VPS50-201ENST00000251739 POTECB2RU33 542 aa13.72□□□□□ -0.21
VPS50-201ENST00000251739 C21orf2O43822 256 aa13.72□□□□□ -0.21
VPS50-201ENST00000251739 ST5P78524 1137 aa13.72□□□□□ -0.21
VPS50-201ENST00000251739 TAF7Q15545 349 aaPredicted RBP13.72□□□□□ -0.21
VPS50-201ENST00000251739 PRPF40BQ6NWY9 871 aaKnown RBP13.72□□□□□ -0.21
VPS50-201ENST00000251739 C7orf43Q8WVR3 580 aa13.72□□□□□ -0.21
VPS50-201ENST00000251739 ZNF622Q969S3 477 aaKnown RBP eCLIP13.72□□□□□ -0.21
VPS50-201ENST00000251739 PHF12Q96QT6 1004 aa13.72□□□□□ -0.21
VPS50-201ENST00000251739 SNED1Q8TER0 1413 aa13.72□□□□□ -0.21
VPS50-201ENST00000251739 VEGFAP15692 232 aaPredicted RBP13.71□□□□□ -0.21
VPS50-201ENST00000251739 NPM2Q86SE8 214 aaKnown RBP13.71□□□□□ -0.21
VPS50-201ENST00000251739 JMYQ8N9B5 988 aa13.71□□□□□ -0.21
VPS50-201ENST00000251739 SMC1BQ8NDV3 1235 aa13.71□□□□□ -0.21
VPS50-201ENST00000251739 CNKSR1Q969H4 720 aa13.71□□□□□ -0.21
VPS50-201ENST00000251739 KIF12Q96FN5 646 aa13.71□□□□□ -0.21
VPS50-201ENST00000251739 MASTLQ96GX5 879 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 123.6 ms