RNA–Protein interactions for RNA: ENST00000250495.9

NEDD8-201, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEDD8, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-201ENST00000250495 RALBP1Q15311 655 aa27.84■■■□□ 2.05
NEDD8-201ENST00000250495 NBPF5PQ86XG9 351 aaPredicted RBP27.84■■■□□ 2.05
NEDD8-201ENST00000250495 DLG5Q8TDM6 1919 aa27.84■■■□□ 2.05
NEDD8-201ENST00000250495 C21orf2O43822 256 aa27.83■■■□□ 2.05
NEDD8-201ENST00000250495 STYK1Q6J9G0 422 aa27.83■■■□□ 2.05
NEDD8-201ENST00000250495 NFKBIEO00221 500 aa27.82■■■□□ 2.04
NEDD8-201ENST00000250495 TPTE2Q6XPS3 522 aa27.82■■■□□ 2.04
NEDD8-201ENST00000250495 MASTLQ96GX5 879 aa27.82■■■□□ 2.04
NEDD8-201ENST00000250495 CEP350Q5VT06 3117 aa27.81■■■□□ 2.04
NEDD8-201ENST00000250495 SRGNP10124 158 aa27.81■■■□□ 2.04
NEDD8-201ENST00000250495 PRELPP51888 382 aa27.81■■■□□ 2.04
NEDD8-201ENST00000250495 ZNF219Q9P2Y4 722 aaPredicted RBP27.81■■■□□ 2.04
NEDD8-201ENST00000250495 NIP7Q9Y221 180 aaKnown RBP eCLIP27.81■■■□□ 2.04
NEDD8-201ENST00000250495 GLTPD2A6NH11 291 aa27.8■■■□□ 2.04
NEDD8-201ENST00000250495 FSTL1Q12841 308 aa27.8■■■□□ 2.04
NEDD8-201ENST00000250495 CCDC88AQ3V6T2 1871 aa27.8■■■□□ 2.04
NEDD8-201ENST00000250495 EIF4A1P60842 406 aaKnown RBP27.79■■■□□ 2.04
NEDD8-201ENST00000250495 SOGA3Q5TF21 947 aa27.78■■■□□ 2.04
NEDD8-201ENST00000250495 THUMPD2Q9BTF0 503 aaKnown RBP27.77■■■□□ 2.04
NEDD8-201ENST00000250495 COL11A2P13942 1736 aaPredicted RBP27.76■■■□□ 2.03
NEDD8-201ENST00000250495 TNRC6CQ9HCJ0 1690 aaKnown RBP27.76■■■□□ 2.03
NEDD8-201ENST00000250495 DPY19L2Q6NUT2 758 aa27.76■■■□□ 2.03
NEDD8-201ENST00000250495 VEGFAP15692 232 aaPredicted RBP27.75■■■□□ 2.03
NEDD8-201ENST00000250495 HLFQ16534 295 aa27.75■■■□□ 2.03
NEDD8-201ENST00000250495 PRPF40BQ6NWY9 871 aaKnown RBP27.75■■■□□ 2.03
NEDD8-201ENST00000250495 NGEFQ8N5V2 710 aa27.75■■■□□ 2.03
NEDD8-201ENST00000250495 RRP7AQ9Y3A4 280 aaKnown RBP27.75■■■□□ 2.03
NEDD8-201ENST00000250495 KDM3BQ7LBC6 1761 aa27.75■■■□□ 2.03
NEDD8-201ENST00000250495 LTBP3Q9NS15 1303 aa27.74■■■□□ 2.03
NEDD8-201ENST00000250495 KLRG2A4D1S0 409 aaPredicted RBP27.74■■■□□ 2.03
NEDD8-201ENST00000250495 ERVV-1B6SEH8 477 aa27.74■■■□□ 2.03
NEDD8-201ENST00000250495 NPR1P16066 1061 aa27.74■■■□□ 2.03
NEDD8-201ENST00000250495 GTF2E1P29083 439 aaPredicted RBP27.74■■■□□ 2.03
NEDD8-201ENST00000250495 ERFEQ4G0M1 354 aa27.74■■■□□ 2.03
NEDD8-201ENST00000250495 TAOK3Q9H2K8 898 aa27.74■■■□□ 2.03
NEDD8-201ENST00000250495 LAMB4A4D0S4 1761 aa27.73■■■□□ 2.03
NEDD8-201ENST00000250495 FER1L6Q2WGJ9 1857 aa27.73■■■□□ 2.03
NEDD8-201ENST00000250495 FAM177BA6PVY3 158 aa27.73■■■□□ 2.03
NEDD8-201ENST00000250495 RIPK4P57078 832 aa27.73■■■□□ 2.03
NEDD8-201ENST00000250495 DDX10Q13206 875 aaKnown RBP27.73■■■□□ 2.03
NEDD8-201ENST00000250495 SLX4Q8IY92 1834 aa27.73■■■□□ 2.03
NEDD8-201ENST00000250495 SMC1BQ8NDV3 1235 aa27.72■■■□□ 2.03
NEDD8-201ENST00000250495 KIF6Q6ZMV9 814 aa27.71■■■□□ 2.03
NEDD8-201ENST00000250495 TSPYL4Q9UJ04 414 aa27.71■■■□□ 2.03
NEDD8-201ENST00000250495 MAP3K15Q6ZN16 1313 aa27.7■■■□□ 2.03
NEDD8-201ENST00000250495 MYL6BP14649 208 aa27.7■■■□□ 2.02
NEDD8-201ENST00000250495 NYXQ9GZU5 481 aa27.7■■■□□ 2.02
NEDD8-201ENST00000250495 BABAM1Q9NWV8 329 aa27.7■■■□□ 2.02
NEDD8-201ENST00000250495 DICER1Q9UPY3 1922 aaKnown RBP27.69■■■□□ 2.02
NEDD8-201ENST00000250495 LMOD3Q0VAK6 560 aa27.69■■■□□ 2.02
NEDD8-201ENST00000250495 DNAJC5GQ8N7S2 189 aa27.69■■■□□ 2.02
NEDD8-201ENST00000250495 C7orf43Q8WVR3 580 aa27.69■■■□□ 2.02
NEDD8-201ENST00000250495 TIAM2Q8IVF5 1701 aa27.69■■■□□ 2.02
NEDD8-201ENST00000250495 ERBB4Q15303 1308 aa27.68■■■□□ 2.02
NEDD8-201ENST00000250495 CACNA1SQ13698 1873 aa27.68■■■□□ 2.02
NEDD8-201ENST00000250495 ALDH1B1P30837 517 aa27.68■■■□□ 2.02
NEDD8-201ENST00000250495 MYBBP1AQ9BQG0 1328 aaKnown RBP27.67■■■□□ 2.02
NEDD8-201ENST00000250495 TMPOP42166 694 aaKnown RBP27.67■■■□□ 2.02
NEDD8-201ENST00000250495 CCDC93Q567U6 631 aa27.67■■■□□ 2.02
NEDD8-201ENST00000250495 TTLL7Q6ZT98 887 aa27.67■■■□□ 2.02
NEDD8-201ENST00000250495 ARFGEF2Q9Y6D5 1785 aa27.67■■■□□ 2.02
NEDD8-201ENST00000250495 NUP98P52948 1817 aa27.65■■■□□ 2.02
NEDD8-201ENST00000250495 ZBTB3Q9H5J0 574 aa27.64■■■□□ 2.02
NEDD8-201ENST00000250495 POTECB2RU33 542 aa27.63■■■□□ 2.01
NEDD8-201ENST00000250495 RTKN2Q8IZC4 609 aa27.63■■■□□ 2.01
NEDD8-201ENST00000250495 WDR90Q96KV7 1748 aa27.62■■■□□ 2.01
NEDD8-201ENST00000250495 EIF2S2P20042 333 aaKnown RBP27.62■■■□□ 2.01
NEDD8-201ENST00000250495 NUTM1Q86Y26 1132 aa27.62■■■□□ 2.01
NEDD8-201ENST00000250495 GPTP24298 496 aa27.61■■■□□ 2.01
NEDD8-201ENST00000250495 FKBP4Q02790 459 aaKnown RBP eCLIP27.61■■■□□ 2.01
NEDD8-201ENST00000250495 GIGYF2Q6Y7W6 1299 aaKnown RBP27.61■■■□□ 2.01
NEDD8-201ENST00000250495 WDR43Q15061 677 aaKnown RBP eCLIP27.6■■■□□ 2.01
NEDD8-201ENST00000250495 CRY2Q49AN0 593 aa27.6■■■□□ 2.01
NEDD8-201ENST00000250495 ZNF34Q8IZ26 560 aa27.6■■■□□ 2.01
NEDD8-201ENST00000250495 HTRA3P83110 453 aa27.59■■■□□ 2.01
NEDD8-201ENST00000250495 NEUROD2Q15784 382 aa27.59■■■□□ 2.01
NEDD8-201ENST00000250495 RUNDC1Q96C34 613 aa27.59■■■□□ 2.01
NEDD8-201ENST00000250495 IBTKQ9P2D0 1353 aaPredicted RBP27.59■■■□□ 2.01
NEDD8-201ENST00000250495 DDNO94850 711 aaPredicted RBP27.58■■■□□ 2.01
NEDD8-201ENST00000250495 PDIA6Q15084 440 aa27.58■■■□□ 2.01
NEDD8-201ENST00000250495 SUSD4Q5VX71 490 aa27.58■■■□□ 2.01
NEDD8-201ENST00000250495 PPP1R42Q7Z4L9 355 aa27.58■■■□□ 2.01
NEDD8-201ENST00000250495 CCDC146Q8IYE0 955 aa27.58■■■□□ 2.01
NEDD8-201ENST00000250495 KLRG1Q96E93 195 aa27.58■■■□□ 2.01
NEDD8-201ENST00000250495 PARP10Q53GL7 1025 aa27.57■■■□□ 2
NEDD8-201ENST00000250495 RPGRQ92834 1020 aaKnown RBP27.57■■■□□ 2
NEDD8-201ENST00000250495 UBN2Q6ZU65 1347 aa27.57■■■□□ 2
NEDD8-201ENST00000250495 CC2D2BQ6DHV5 1058 aa27.56■■■□□ 2
NEDD8-201ENST00000250495 OLFM4Q6UX06 510 aa27.56■■■□□ 2
NEDD8-201ENST00000250495 ABCC12Q96J65 1359 aa27.56■■■□□ 2
NEDD8-201ENST00000250495 HOXA10P31260 410 aaPredicted RBP27.55■■■□□ 2
NEDD8-201ENST00000250495 LRP10Q7Z4F1 713 aa27.55■■■□□ 2
NEDD8-201ENST00000250495 ZNF277Q9NRM2 450 aaPredicted RBP27.55■■■□□ 2
NEDD8-201ENST00000250495 CHL1O00533 1208 aa27.54■■■□□ 2
NEDD8-201ENST00000250495 RIC1Q4ADV7 1423 aa27.54■■■□□ 2
NEDD8-201ENST00000250495 SYNE4Q8N205 404 aa27.54■■■□□ 2
NEDD8-201ENST00000250495 IQCA1LA6NCM1 817 aa27.53■■■□□ 2
NEDD8-201ENST00000250495 NTSR2O95665 410 aa27.53■■■□□ 2
NEDD8-201ENST00000250495 IFFO2Q5TF58 517 aa27.53■■■□□ 2
NEDD8-201ENST00000250495 RBM17Q96I25 401 aaKnown RBP27.53■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms