RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 CAVIN1Q6NZI2 390 aaKnown RBP20.69■□□□□ 0.9
FOXA1-201ENST00000250448 CCDC9Q9Y3X0 531 aaKnown RBP20.69■□□□□ 0.9
FOXA1-201ENST00000250448 ST18O60284 1047 aa20.69■□□□□ 0.9
FOXA1-201ENST00000250448 AIMP1Q12904 312 aaKnown RBP20.69■□□□□ 0.9
FOXA1-201ENST00000250448 USP16Q9Y5T5 823 aa20.69■□□□□ 0.9
FOXA1-201ENST00000250448 PI4KAP2A4QPH2 592 aa20.68■□□□□ 0.9
FOXA1-201ENST00000250448 MYL6BP14649 208 aa20.68■□□□□ 0.9
FOXA1-201ENST00000250448 PKP1Q13835 747 aa20.68■□□□□ 0.9
FOXA1-201ENST00000250448 PI4KAP1Q8N8J0 262 aa20.68■□□□□ 0.9
FOXA1-201ENST00000250448 TPM2P07951 284 aa20.68■□□□□ 0.9
FOXA1-201ENST00000250448 NCLP19338 710 aaKnown RBP20.68■□□□□ 0.9
FOXA1-201ENST00000250448 ZSCAN23Q3MJ62 389 aa20.68■□□□□ 0.9
FOXA1-201ENST00000250448 DBF4Q9UBU7 674 aaPredicted RBP20.68■□□□□ 0.9
FOXA1-201ENST00000250448 SMARCA5O60264 1052 aaPredicted RBP20.68■□□□□ 0.9
FOXA1-201ENST00000250448 PTCD1O75127 700 aaKnown RBP20.68■□□□□ 0.9
FOXA1-201ENST00000250448 PLCH1Q4KWH8 1693 aa20.67■□□□□ 0.9
FOXA1-201ENST00000250448 C5P01031 1676 aa20.67■□□□□ 0.9
FOXA1-201ENST00000250448 CCT4P50991 539 aaKnown RBP20.67■□□□□ 0.9
FOXA1-201ENST00000250448 MRC1P22897 1456 aa20.66■□□□□ 0.9
FOXA1-201ENST00000250448 C8orf37Q96NL8 207 aa20.66■□□□□ 0.9
FOXA1-201ENST00000250448 CACNA1FO60840 1977 aa20.66■□□□□ 0.9
FOXA1-201ENST00000250448 REC8O95072 547 aa20.66■□□□□ 0.9
FOXA1-201ENST00000250448 APBB1O00213 710 aa20.65■□□□□ 0.9
FOXA1-201ENST00000250448 ZGPATQ8N5A5 531 aaKnown RBP20.65■□□□□ 0.9
FOXA1-201ENST00000250448 CERKQ8TCT0 537 aa20.65■□□□□ 0.9
FOXA1-201ENST00000250448 NKX1-1Q15270 411 aaPredicted RBP20.65■□□□□ 0.9
FOXA1-201ENST00000250448 PDIA6Q15084 440 aa20.64■□□□□ 0.9
FOXA1-201ENST00000250448 FMNL2Q96PY5 1086 aa20.64■□□□□ 0.9
FOXA1-201ENST00000250448 PLEKHG2Q9H7P9 1386 aa20.64■□□□□ 0.9
FOXA1-201ENST00000250448 MSNP26038 577 aaKnown RBP20.64■□□□□ 0.89
FOXA1-201ENST00000250448 A0A0G2JS52 829 aa20.63■□□□□ 0.89
FOXA1-201ENST00000250448 ERVV-2B6SEH9 535 aa20.63■□□□□ 0.89
FOXA1-201ENST00000250448 ADCY9O60503 1353 aa20.63■□□□□ 0.89
FOXA1-201ENST00000250448 ERC2O15083 957 aa20.63■□□□□ 0.89
FOXA1-201ENST00000250448 SNRPA1P09661 255 aaKnown RBP20.63■□□□□ 0.89
FOXA1-201ENST00000250448 DISP2A7MBM2 1401 aa20.63■□□□□ 0.89
FOXA1-201ENST00000250448 EXOC5O00471 708 aa20.62■□□□□ 0.89
FOXA1-201ENST00000250448 SYTL4Q96C24 671 aaPredicted RBP20.62■□□□□ 0.89
FOXA1-201ENST00000250448 RBSNQ9H1K0 784 aa20.62■□□□□ 0.89
FOXA1-201ENST00000250448 MAP3K2Q9Y2U5 619 aa20.62■□□□□ 0.89
FOXA1-201ENST00000250448 ZDHHC9Q9Y397 364 aa20.62■□□□□ 0.89
FOXA1-201ENST00000250448 SPATA31A1Q5TZJ5 1347 aa20.62■□□□□ 0.89
FOXA1-201ENST00000250448 KIAA1211Q6ZU35 1233 aa20.62■□□□□ 0.89
FOXA1-201ENST00000250448 DNAAF4Q8WXU2 420 aa20.62■□□□□ 0.89
FOXA1-201ENST00000250448 NGLY1Q96IV0 654 aa20.62■□□□□ 0.89
FOXA1-201ENST00000250448 TOGARAM1Q9Y4F4 1720 aa20.61■□□□□ 0.89
FOXA1-201ENST00000250448 PRPF40AO75400 957 aaKnown RBP20.61■□□□□ 0.89
FOXA1-201ENST00000250448 TMOD3Q9NYL9 352 aa20.61■□□□□ 0.89
FOXA1-201ENST00000250448 HS1BP3Q53T59 392 aa20.61■□□□□ 0.89
FOXA1-201ENST00000250448 GPT2Q8TD30 523 aa20.61■□□□□ 0.89
FOXA1-201ENST00000250448 DDX21Q9NR30 783 aaKnown RBP eCLIP20.61■□□□□ 0.89
FOXA1-201ENST00000250448 ASAP1Q9ULH1 1129 aa20.61■□□□□ 0.89
FOXA1-201ENST00000250448 OFD1O75665 1012 aa20.6■□□□□ 0.89
FOXA1-201ENST00000250448 USP44Q9H0E7 712 aa20.6■□□□□ 0.89
FOXA1-201ENST00000250448 HMMRO75330 724 aa20.6■□□□□ 0.89
FOXA1-201ENST00000250448 PIGBQ92521 554 aa20.6■□□□□ 0.89
FOXA1-201ENST00000250448 SRCIN1Q9C0H9 1055 aa20.6■□□□□ 0.89
FOXA1-201ENST00000250448 RBM27Q9P2N5 1060 aaKnown RBP20.6■□□□□ 0.89
FOXA1-201ENST00000250448 PRIM1P49642 420 aaKnown RBP20.59■□□□□ 0.89
FOXA1-201ENST00000250448 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.59■□□□□ 0.89
FOXA1-201ENST00000250448 XAGE3Q8WTP9 111 aa20.59■□□□□ 0.89
FOXA1-201ENST00000250448 PDLIM2Q96JY6 352 aa20.59■□□□□ 0.89
FOXA1-201ENST00000250448 HYPKQ9NX55 129 aa20.59■□□□□ 0.89
FOXA1-201ENST00000250448 CWF19L2Q2TBE0 894 aaKnown RBP20.59■□□□□ 0.89
FOXA1-201ENST00000250448 LRRFIP2Q9Y608 721 aaKnown RBP20.59■□□□□ 0.89
FOXA1-201ENST00000250448 NRAPQ86VF7 1730 aa20.59■□□□□ 0.89
FOXA1-201ENST00000250448 BEND3Q5T5X7 828 aa20.58■□□□□ 0.89
FOXA1-201ENST00000250448 COPS6Q7L5N1 327 aa20.58■□□□□ 0.89
FOXA1-201ENST00000250448 OSBPL3Q9H4L5 887 aa20.58■□□□□ 0.89
FOXA1-201ENST00000250448 CHMP4AQ9BY43 222 aa20.58■□□□□ 0.88
FOXA1-201ENST00000250448 JCADQ9P266 1359 aa20.57■□□□□ 0.88
FOXA1-201ENST00000250448 GNAI2P04899 355 aa20.57■□□□□ 0.88
FOXA1-201ENST00000250448 NBPF7P0C2Y1 421 aaPredicted RBP20.57■□□□□ 0.88
FOXA1-201ENST00000250448 HSPA1LP34931 641 aa20.57■□□□□ 0.88
FOXA1-201ENST00000250448 PDE1AP54750 535 aa20.57■□□□□ 0.88
FOXA1-201ENST00000250448 SPATA31A5Q5VU36 1347 aa20.56■□□□□ 0.88
FOXA1-201ENST00000250448 SPATA31A7Q8IWB4 1347 aa20.56■□□□□ 0.88
FOXA1-201ENST00000250448 A1BGP04217 495 aa20.56■□□□□ 0.88
FOXA1-201ENST00000250448 DDB1Q16531 1140 aa20.56■□□□□ 0.88
FOXA1-201ENST00000250448 KSR2Q6VAB6 950 aa20.56■□□□□ 0.88
FOXA1-201ENST00000250448 TUBGCP6Q96RT7 1819 aa20.56■□□□□ 0.88
FOXA1-201ENST00000250448 GLI3P10071 1580 aa20.56■□□□□ 0.88
FOXA1-201ENST00000250448 ACSBG1Q96GR2 724 aa20.56■□□□□ 0.88
FOXA1-201ENST00000250448 SLIT2O94813 1529 aa20.56■□□□□ 0.88
FOXA1-201ENST00000250448 FAM98CQ17RN3 349 aaKnown RBP20.56■□□□□ 0.88
FOXA1-201ENST00000250448 UBTFL1P0CB47 393 aaPredicted RBP20.55■□□□□ 0.88
FOXA1-201ENST00000250448 PNMA6EA0A0J9YXQ4 647 aa20.55■□□□□ 0.88
FOXA1-201ENST00000250448 LRSAM1Q6UWE0 723 aa20.55■□□□□ 0.88
FOXA1-201ENST00000250448 RIC3Q7Z5B4 369 aa20.55■□□□□ 0.88
FOXA1-201ENST00000250448 TMEM63CQ9P1W3 806 aa20.55■□□□□ 0.88
FOXA1-201ENST00000250448 NOL7Q9UMY1 257 aaKnown RBP20.55■□□□□ 0.88
FOXA1-201ENST00000250448 NBPF26B4DH59 902 aa20.54■□□□□ 0.88
FOXA1-201ENST00000250448 GNAI3P08754 354 aa20.54■□□□□ 0.88
FOXA1-201ENST00000250448 NBPF14Q5TI25 921 aa20.54■□□□□ 0.88
FOXA1-201ENST00000250448 NBPF10Q6P3W6 841 aaKnown RBP20.54■□□□□ 0.88
FOXA1-201ENST00000250448 NBPF15Q8N660 670 aa20.54■□□□□ 0.88
FOXA1-201ENST00000250448 CHAMP1Q96JM3 812 aa20.54■□□□□ 0.88
FOXA1-201ENST00000250448 KCPQ6ZWJ8 1503 aa20.54■□□□□ 0.88
FOXA1-201ENST00000250448 LRP10Q7Z4F1 713 aa20.54■□□□□ 0.88
FOXA1-201ENST00000250448 UNC5CLQ8IV45 518 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms