RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 IQGAP2Q13576 1575 aa15.69■□□□□ 0.1
SF3A1-201ENST00000215793 CCDC96Q2M329 555 aa15.69■□□□□ 0.1
SF3A1-201ENST00000215793 TAF3Q5VWG9 929 aa15.69■□□□□ 0.1
SF3A1-201ENST00000215793 IFNL2Q8IZJ0 200 aa15.69■□□□□ 0.1
SF3A1-201ENST00000215793 ARHGAP45Q92619 1136 aa15.69■□□□□ 0.1
SF3A1-201ENST00000215793 USP25Q9UHP3 1055 aa15.69■□□□□ 0.1
SF3A1-201ENST00000215793 LDHAL6AQ6ZMR3 332 aa15.69■□□□□ 0.1
SF3A1-201ENST00000215793 LUZP1Q86V48 1076 aa15.69■□□□□ 0.1
SF3A1-201ENST00000215793 TCP11L1Q9NUJ3 509 aa15.69■□□□□ 0.1
SF3A1-201ENST00000215793 USP16Q9Y5T5 823 aa15.69■□□□□ 0.1
SF3A1-201ENST00000215793 MCM5P33992 734 aa15.68■□□□□ 0.1
SF3A1-201ENST00000215793 AMPD3Q01432 767 aa15.68■□□□□ 0.1
SF3A1-201ENST00000215793 CCT2P78371 535 aaKnown RBP15.68■□□□□ 0.1
SF3A1-201ENST00000215793 STX1AQ16623 288 aa15.68■□□□□ 0.1
SF3A1-201ENST00000215793 CDC5LQ99459 802 aaKnown RBP15.68■□□□□ 0.1
SF3A1-201ENST00000215793 ADGRL1O94910 1474 aa15.68■□□□□ 0.1
SF3A1-201ENST00000215793 GJB2P29033 226 aa15.68■□□□□ 0.1
SF3A1-201ENST00000215793 NUP88Q99567 741 aaPredicted RBP15.68■□□□□ 0.1
SF3A1-201ENST00000215793 MAP3K2Q9Y2U5 619 aa15.68■□□□□ 0.1
SF3A1-201ENST00000215793 PIP4K2BP78356 416 aa15.68■□□□□ 0.1
SF3A1-201ENST00000215793 KANK3Q6NY19 840 aa15.68■□□□□ 0.1
SF3A1-201ENST00000215793 EHMT1Q9H9B1 1298 aa15.68■□□□□ 0.1
SF3A1-201ENST00000215793 CWC25Q9NXE8 425 aaPredicted RBP15.68■□□□□ 0.1
SF3A1-201ENST00000215793 SHTN1A0MZ66 631 aa15.67■□□□□ 0.1
SF3A1-201ENST00000215793 GOLGA6L9A6NEM1 432 aa15.67■□□□□ 0.1
SF3A1-201ENST00000215793 GOLIM4O00461 696 aa15.67■□□□□ 0.1
SF3A1-201ENST00000215793 CETN1Q12798 172 aa15.67■□□□□ 0.1
SF3A1-201ENST00000215793 UBA5Q9GZZ9 404 aa15.67■□□□□ 0.1
SF3A1-201ENST00000215793 C14orf93Q9H972 538 aaKnown RBP15.67■□□□□ 0.1
SF3A1-201ENST00000215793 ABCA10Q8WWZ4 1543 aa15.67■□□□□ 0.1
SF3A1-201ENST00000215793 PPP1R42Q7Z4L9 355 aa15.67■□□□□ 0.1
SF3A1-201ENST00000215793 NEK1Q96PY6 1258 aa15.67■□□□□ 0.1
SF3A1-201ENST00000215793 INCENPQ9NQS7 918 aa15.67■□□□□ 0.1
SF3A1-201ENST00000215793 FAM135AQ9P2D6 1515 aa15.67■□□□□ 0.1
SF3A1-201ENST00000215793 ZBTB3Q9H5J0 574 aa15.67■□□□□ 0.1
SF3A1-201ENST00000215793 ORC3Q9UBD5 711 aaPredicted RBP15.67■□□□□ 0.1
SF3A1-201ENST00000215793 MAP3K1Q13233 1512 aa15.67■□□□□ 0.1
SF3A1-201ENST00000215793 BAG4O95429 457 aaKnown RBP15.67■□□□□ 0.1
SF3A1-201ENST00000215793 TTC22Q5TAA0 569 aa15.67■□□□□ 0.1
SF3A1-201ENST00000215793 PI4KAP2A4QPH2 592 aa15.66■□□□□ 0.1
SF3A1-201ENST00000215793 EXOC5O00471 708 aa15.66■□□□□ 0.1
SF3A1-201ENST00000215793 TNNT1P13805 278 aa15.66■□□□□ 0.1
SF3A1-201ENST00000215793 UBE2HP62256 183 aa15.66■□□□□ 0.1
SF3A1-201ENST00000215793 TDRD12Q587J7 1177 aaKnown RBP15.66■□□□□ 0.1
SF3A1-201ENST00000215793 PI4KAP1Q8N8J0 262 aa15.66■□□□□ 0.1
SF3A1-201ENST00000215793 MBIPQ9NS73 344 aa15.66■□□□□ 0.1
SF3A1-201ENST00000215793 ANKRD36BQ8N2N9 1353 aa15.66■□□□□ 0.1
SF3A1-201ENST00000215793 ZNF165P49910 485 aa15.66■□□□□ 0.1
SF3A1-201ENST00000215793 CCDC91Q7Z6B0 441 aa15.66■□□□□ 0.1
SF3A1-201ENST00000215793 DYDC1Q8WWB3 177 aa15.66■□□□□ 0.1
SF3A1-201ENST00000215793 CALML4Q96GE6 196 aa15.66■□□□□ 0.1
SF3A1-201ENST00000215793 TMEM67Q5HYA8 995 aa15.66■□□□□ 0.1
SF3A1-201ENST00000215793 NCOA7Q8NI08 942 aa15.66■□□□□ 0.1
SF3A1-201ENST00000215793 ZSCAN16Q9H4T2 348 aaPredicted RBP15.66■□□□□ 0.1
SF3A1-201ENST00000215793 TFIP11Q9UBB9 837 aaKnown RBP15.66■□□□□ 0.1
SF3A1-201ENST00000215793 UVSSAQ2YD98 709 aa15.66■□□□□ 0.1
SF3A1-201ENST00000215793 RPGRQ92834 1020 aaKnown RBP15.66■□□□□ 0.1
SF3A1-201ENST00000215793 TBC1D32Q96NH3 1257 aa15.66■□□□□ 0.1
SF3A1-201ENST00000215793 PTPN23Q9H3S7 1636 aa15.65■□□□□ 0.1
SF3A1-201ENST00000215793 PDE4BQ07343 736 aa15.65■□□□□ 0.1
SF3A1-201ENST00000215793 RPRD2Q5VT52 1461 aaKnown RBP15.65■□□□□ 0.1
SF3A1-201ENST00000215793 BAG3O95817 575 aa15.65■□□□□ 0.1
SF3A1-201ENST00000215793 MTIF2P46199 727 aaKnown RBP15.65■□□□□ 0.1
SF3A1-201ENST00000215793 HDAC1Q13547 482 aaPredicted RBP15.65■□□□□ 0.1
SF3A1-201ENST00000215793 KLHL40Q2TBA0 621 aa15.65■□□□□ 0.1
SF3A1-201ENST00000215793 UBA7P41226 1012 aa15.65■□□□□ 0.1
SF3A1-201ENST00000215793 CCDC102BQ68D86 513 aa15.65■□□□□ 0.1
SF3A1-201ENST00000215793 UBE3BQ7Z3V4 1068 aa15.65■□□□□ 0.1
SF3A1-201ENST00000215793 POTEB2H3BUK9 544 aa15.65■□□□□ 0.1
SF3A1-201ENST00000215793 SKAP1Q86WV1 359 aa15.64■□□□□ 0.09
SF3A1-201ENST00000215793 CGNQ9P2M7 1197 aaKnown RBP15.64■□□□□ 0.09
SF3A1-201ENST00000215793 GSTTP1A0A1W2PQM5 241 aa15.64■□□□□ 0.09
SF3A1-201ENST00000215793 FAM114A1Q8IWE2 563 aa15.64■□□□□ 0.09
SF3A1-201ENST00000215793 NAA15Q9BXJ9 866 aaKnown RBP15.64■□□□□ 0.09
SF3A1-201ENST00000215793 SNRPA1P09661 255 aaKnown RBP15.64■□□□□ 0.09
SF3A1-201ENST00000215793 UQCRFS1P1P0C7P4 283 aa15.64■□□□□ 0.09
SF3A1-201ENST00000215793 GPTP24298 496 aa15.64■□□□□ 0.09
SF3A1-201ENST00000215793 MFSD6Q6ZSS7 791 aa15.64■□□□□ 0.09
SF3A1-201ENST00000215793 METAP2P50579 478 aaKnown RBP eCLIP15.64■□□□□ 0.092e-6■■■□□ 18.6
SF3A1-201ENST00000215793 ALS2CR12Q96Q35 445 aa15.64■□□□□ 0.09
SF3A1-201ENST00000215793 WDHD1O75717 1129 aaPredicted RBP15.63■□□□□ 0.09
SF3A1-201ENST00000215793 SPTY2D1Q68D10 685 aaPredicted RBP15.63■□□□□ 0.09
SF3A1-201ENST00000215793 CPLX3Q8WVH0 158 aa15.63■□□□□ 0.09
SF3A1-201ENST00000215793 MAP2K1Q02750 393 aaPredicted RBP15.63■□□□□ 0.09
SF3A1-201ENST00000215793 IFFO1Q0D2I5 559 aa15.63■□□□□ 0.09
SF3A1-201ENST00000215793 STXBP4Q6ZWJ1 553 aa15.63■□□□□ 0.09
SF3A1-201ENST00000215793 RHPN1Q8TCX5 695 aa15.63■□□□□ 0.09
SF3A1-201ENST00000215793 LRRC27Q9C0I9 530 aa15.63■□□□□ 0.09
SF3A1-201ENST00000215793 GDPD2Q9HCC8 539 aa15.63■□□□□ 0.09
SF3A1-201ENST00000215793 PCF11O94913 1555 aaKnown RBP15.63■□□□□ 0.09
SF3A1-201ENST00000215793 KIF14Q15058 1648 aa15.63■□□□□ 0.09
SF3A1-201ENST00000215793 ZFYP08048 801 aaPredicted RBP15.63■□□□□ 0.09
SF3A1-201ENST00000215793 PRKCSHP14314 528 aaPredicted RBP15.63■□□□□ 0.09
SF3A1-201ENST00000215793 IDEP14735 1019 aa15.63■□□□□ 0.09
SF3A1-201ENST00000215793 CCDC150Q8NCX0 1101 aa15.63■□□□□ 0.09
SF3A1-201ENST00000215793 SCLT1Q96NL6 688 aa15.63■□□□□ 0.09
SF3A1-201ENST00000215793 NOS1P29475 1434 aa15.63■□□□□ 0.09
SF3A1-201ENST00000215793 TSPY2A6NKD2 308 aa15.63■□□□□ 0.09
SF3A1-201ENST00000215793 ANAPC15P60006 121 aa15.63■□□□□ 0.09
SF3A1-201ENST00000215793 CCDC178Q5BJE1 867 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 239.7 ms