RNA–Protein interactions for RNA: ENSMUST00000041643.3

Pcif1-201, Transcript of Phosphorylated CTD-interacting factor 1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Pcif1, Length 5,772 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Pcif1-201ENSMUST00000041643 Neurl4Q5NCX5 1563 aa13.99□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Izumo3A6PWV3 263 aa13.99□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Ppp4r3aQ6P2K6 820 aa13.99□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Slc39a6Q8C145 765 aa13.99□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Robo2Q7TPD3 1470 aa13.99□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Slc35g1Q8BY79 368 aa13.99□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Tns3Q5SSZ5 1440 aa13.99□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Ipo7Q9EPL8 1038 aaKnown RBP13.99□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Aifm3Q3TY86 605 aa13.98□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Ddx46Q569Z5 1032 aaKnown RBP13.98□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Arhgef1Q61210 920 aaKnown RBP13.98□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Tmem266Q8BZB3 538 aa13.98□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Krt25Q8VCW2 446 aa13.98□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Mcmdc2E9Q956 681 aa13.98□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Ush1cQ9ES64 910 aa13.98□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Wasf1Q8R5H6 559 aa13.98□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Ces1hD3Z298 562 aa13.98□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Psrc1Q9D0P7 329 aa13.98□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Ccdc178Q8CDV0 866 aa13.98□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Rbbp8nlA2ABX0 614 aa13.97□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Ier5O89113 308 aa13.97□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Znf18Q810A1 556 aa13.97□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Gigyf1Q99MR1 1044 aaKnown RBP13.97□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Ccdc173A0JLY1 547 aa13.97□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Atp2b3Q0VF55 1220 aa13.97□□□□□ -0.17
Pcif1-201ENSMUST00000041643 RarsQ9D0I9 660 aaKnown RBP13.97□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Galntl5Q9D4M9 431 aa13.97□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Ppfia1B2RXQ2 1266 aa13.96□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Gm12185Q5NCB2 835 aa13.96□□□□□ -0.17
Pcif1-201ENSMUST00000041643 ZwintQ9CQU5 252 aa13.96□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Brd1E9PZ26 1189 aaKnown RBP13.96□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Nkx1-2P42580 305 aa13.96□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Jdp2P97875 163 aa13.96□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Ssh1Q76I79 1042 aa13.96□□□□□ -0.17
Pcif1-201ENSMUST00000041643 Kdm2bQ6P1G2 1309 aa13.96□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Scaf1Q5U4C3 1256 aaKnown RBP13.96□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Ncoa4Q5U4H9 625 aa13.96□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Aldh8a1Q8BH00 487 aa13.96□□□□□ -0.18
Pcif1-201ENSMUST00000041643 RtcbQ99LF4 505 aaKnown RBP13.96□□□□□ -0.18
Pcif1-201ENSMUST00000041643 TnmdQ9EP64 317 aa13.96□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Cyp26c1B2RXA7 518 aa13.96□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Dhx8A2A4P0 1244 aaKnown RBP13.95□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Jarid2Q62315 1234 aa13.95□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Zbtb3Q91X45 518 aa13.95□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Clasp1Q80TV8 1535 aaKnown RBP13.95□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Kdm4aQ8BW72 1064 aa13.95□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Pm20d1Q8C165 503 aa13.95□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Nup88Q8CEC0 753 aaKnown RBP13.95□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Hecw2Q6I6G8 1578 aa13.95□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Pet2A2AHY8 747 aa13.95□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Hand2Q61039 217 aa13.95□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Fam160b2Q80YR2 744 aa13.95□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Ccdc39Q9D5Y1 937 aa13.95□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Znf287Q9EQB9 759 aa13.95□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Tbc1d32Q3URV1 1296 aa13.95□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Cdc42bpgQ80UW5 1551 aa13.95□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Asic4Q7TNS7 539 aa13.94□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Rnf41Q8BH75 317 aa13.94□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Sik1Q60670 779 aa13.94□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Ddx19aQ61655 478 aaKnown RBP13.94□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Esco1Q69Z69 843 aa13.94□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Dusp9Q7TNL7 452 aa13.94□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Tmem143Q8VD26 458 aa13.94□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Med14A2ABV5 1459 aaKnown RBP13.93□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Atf7Q8R0S1 413 aa13.93□□□□□ -0.18
Pcif1-201ENSMUST00000041643 NmiO35309 314 aa13.93□□□□□ -0.18
Pcif1-201ENSMUST00000041643 EvcP57680 1005 aa13.93□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Dydc2Q9D3X8 139 aa13.93□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Cct2P80314 535 aaKnown RBP13.93□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Drc7Q6V3W6 876 aa13.93□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Sde2Q8K1J5 448 aaKnown RBP13.93□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Mctp1E9PV86 951 aa13.92□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Ccdc158Q8CDI6 1109 aa13.92□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Eif4a1P60843 406 aaKnown RBP13.92□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Samm50Q8BGH2 469 aa13.92□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Miga2Q8BK03 593 aa13.92□□□□□ -0.18
Pcif1-201ENSMUST00000041643 CenppQ9CZ92 286 aa13.92□□□□□ -0.18
Pcif1-201ENSMUST00000041643 CalcaP70160 136 aa13.92□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Eno4Q8C042 619 aa13.92□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Bcl11aQ9QYE3 773 aa13.92□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Pcdh10E9PXQ7 1057 aa13.92□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Pdia3P27773 505 aaKnown RBP13.92□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Glg1Q61543 1175 aaKnown RBP13.92□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Ahdc1Q6PAL7 1594 aaKnown RBP13.92□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Kiaa1107Q80TK0 1369 aa13.92□□□□□ -0.18
Pcif1-201ENSMUST00000041643 CltcQ68FD5 1675 aaKnown RBP13.92□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Ncbp3Q8BZR9 615 aaKnown RBP13.92□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Egfem1Q8C088 590 aa13.92□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Hmg20bQ9Z104 317 aa13.92□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Akap12Q9WTQ5 1684 aa13.92□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Vps37dQ810I0 261 aa13.91□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Lrrc43Q3V0L5 667 aa13.91□□□□□ -0.18
Pcif1-201ENSMUST00000041643 EzrP26040 586 aaKnown RBP13.91□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Iqca1Q9CUL5 857 aa13.91□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Cops6O88545 324 aa13.91□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Terf1P70371 421 aa13.91□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Letm1Q9Z2I0 738 aa13.91□□□□□ -0.18
Pcif1-201ENSMUST00000041643 KdrP35918 1367 aa13.91□□□□□ -0.18
Pcif1-201ENSMUST00000041643 Casp1P29452 402 aa13.9□□□□□ -0.18
Pcif1-201ENSMUST00000041643 IntuQ059U7 942 aa13.9□□□□□ -0.18
Retrieved 100 of 22,080 RNA–protein pairs in 54.2 ms