RNA–Protein interactions for RNA: ENSMUST00000022220.12

Msh3-201, Transcript of DNA mismatch repair protein Msh3, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Msh3, Length 3,937 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3-201ENSMUST00000022220 Hnrnpul1Q8VDM6 859 aaKnown RBP12.85□□□□□ -0.35
Msh3-201ENSMUST00000022220 Fam114a1Q9D281 569 aa12.85□□□□□ -0.35
Msh3-201ENSMUST00000022220 Kcnj4P52189 445 aa12.85□□□□□ -0.35
Msh3-201ENSMUST00000022220 Gigyf1Q99MR1 1044 aaKnown RBP12.85□□□□□ -0.35
Msh3-201ENSMUST00000022220 Ier5O89113 308 aa12.84□□□□□ -0.35
Msh3-201ENSMUST00000022220 LifrP42703 1092 aa12.84□□□□□ -0.35
Msh3-201ENSMUST00000022220 Phkg2Q9DB30 406 aa12.84□□□□□ -0.35
Msh3-201ENSMUST00000022220 PigbQ9JJQ0 542 aa12.84□□□□□ -0.35
Msh3-201ENSMUST00000022220 Cdkn1cP49919 348 aa12.84□□□□□ -0.35
Msh3-201ENSMUST00000022220 Gsdma2Q32M21 443 aa12.84□□□□□ -0.35
Msh3-201ENSMUST00000022220 Psma5Q9Z2U1 241 aaKnown RBP12.84□□□□□ -0.35
Msh3-201ENSMUST00000022220 Kidins220E9Q9B7 1793 aa12.84□□□□□ -0.35
Msh3-201ENSMUST00000022220 Rims1Q99NE5 1463 aa12.84□□□□□ -0.35
Msh3-201ENSMUST00000022220 Zbtb21E9Q444 1094 aa12.84□□□□□ -0.35
Msh3-201ENSMUST00000022220 Mcm3P25206 812 aaKnown RBP12.84□□□□□ -0.35
Msh3-201ENSMUST00000022220 Cplx2P84086 134 aa12.84□□□□□ -0.35
Msh3-201ENSMUST00000022220 Cnnm3Q32NY4 713 aa12.84□□□□□ -0.35
Msh3-201ENSMUST00000022220 Asic4Q7TNS7 539 aa12.84□□□□□ -0.35
Msh3-201ENSMUST00000022220 U2af2P26369 475 aaKnown RBP12.83□□□□□ -0.35
Msh3-201ENSMUST00000022220 Gnat3Q3V3I2 354 aa12.83□□□□□ -0.35
Msh3-201ENSMUST00000022220 Kcna6Q61923 529 aa12.83□□□□□ -0.35
Msh3-201ENSMUST00000022220 Cyp7a1Q64505 503 aa12.83□□□□□ -0.35
Msh3-201ENSMUST00000022220 Miga2Q8BK03 593 aa12.83□□□□□ -0.35
Msh3-201ENSMUST00000022220 Cwc25Q9DBF7 416 aa12.83□□□□□ -0.35
Msh3-201ENSMUST00000022220 Qtrt2B8ZXI1 415 aa12.83□□□□□ -0.36
Msh3-201ENSMUST00000022220 Eif4a1P60843 406 aaKnown RBP12.83□□□□□ -0.36
Msh3-201ENSMUST00000022220 Hand2Q61039 217 aa12.83□□□□□ -0.36
Msh3-201ENSMUST00000022220 Rps6ka5Q8C050 863 aa12.83□□□□□ -0.36
Msh3-201ENSMUST00000022220 Rbm28Q8CGC6 750 aaKnown RBP12.83□□□□□ -0.36
Msh3-201ENSMUST00000022220 Gm9992B2RWK3 458 aa12.83□□□□□ -0.36
Msh3-201ENSMUST00000022220 Fam184aE9PW83 1143 aa12.83□□□□□ -0.36
Msh3-201ENSMUST00000022220 Mcmdc2E9Q956 681 aa12.83□□□□□ -0.36
Msh3-201ENSMUST00000022220 Ifit1bl2Q3U687 466 aa12.83□□□□□ -0.36
Msh3-201ENSMUST00000022220 Unc93aQ710D3 458 aa12.83□□□□□ -0.36
Msh3-201ENSMUST00000022220 Prune1Q8BIW1 454 aa12.83□□□□□ -0.36
Msh3-201ENSMUST00000022220 Cchcr1Q8K2I2 770 aa12.83□□□□□ -0.36
Msh3-201ENSMUST00000022220 Psrc1Q9D0P7 329 aa12.83□□□□□ -0.36
Msh3-201ENSMUST00000022220 Anp32cQ64G17 123 aa12.82□□□□□ -0.36
Msh3-201ENSMUST00000022220 Fam170aQ66LM6 333 aa12.82□□□□□ -0.36
Msh3-201ENSMUST00000022220 Cep170bQ80U49 1574 aa12.82□□□□□ -0.36
Msh3-201ENSMUST00000022220 Ptgs1P22437 602 aa12.82□□□□□ -0.36
Msh3-201ENSMUST00000022220 Polr3dQ91WD1 398 aa12.82□□□□□ -0.36
Msh3-201ENSMUST00000022220 Uggt1Q6P5E4 1551 aa12.82□□□□□ -0.36
Msh3-201ENSMUST00000022220 Adgrb3Q80ZF8 1522 aa12.82□□□□□ -0.36
Msh3-201ENSMUST00000022220 Arhgap23Q69ZH9 1483 aa12.82□□□□□ -0.36
Msh3-201ENSMUST00000022220 Atg4a-psA0A0G2JFS9 396 aa12.82□□□□□ -0.36
Msh3-201ENSMUST00000022220 Timm10P62073 90 aa12.82□□□□□ -0.36
Msh3-201ENSMUST00000022220 Atg4aQ8C9S8 396 aa12.82□□□□□ -0.36
Msh3-201ENSMUST00000022220 Mrvi1Q9WUX5 899 aaKnown RBP12.82□□□□□ -0.36
Msh3-201ENSMUST00000022220 Med14A2ABV5 1459 aaKnown RBP12.81□□□□□ -0.36
Msh3-201ENSMUST00000022220 Fsd1Q7TPM6 496 aa12.81□□□□□ -0.36
Msh3-201ENSMUST00000022220 Ets1P27577 440 aa12.81□□□□□ -0.36
Msh3-201ENSMUST00000022220 Zbtb22Q9Z0G7 638 aa12.81□□□□□ -0.36
Msh3-201ENSMUST00000022220 Kdm5aQ3UXZ9 1690 aa12.81□□□□□ -0.36
Msh3-201ENSMUST00000022220 Tpx2A2APB8 745 aaKnown RBP12.81□□□□□ -0.36
Msh3-201ENSMUST00000022220 Tnni2P13412 182 aa12.81□□□□□ -0.36
Msh3-201ENSMUST00000022220 Scaf1Q5U4C3 1256 aaKnown RBP12.81□□□□□ -0.36
Msh3-201ENSMUST00000022220 Mum1Q6DID5 682 aa12.81□□□□□ -0.36
Msh3-201ENSMUST00000022220 Larp1Q6ZQ58 1072 aaKnown RBP12.81□□□□□ -0.36
Msh3-201ENSMUST00000022220 Anapc15-psA0A140T8L6 141 aa12.8□□□□□ -0.36
Msh3-201ENSMUST00000022220 Tlr7P58681 1050 aa12.8□□□□□ -0.36
Msh3-201ENSMUST00000022220 Dhx38Q80X98 1228 aa12.8□□□□□ -0.36
Msh3-201ENSMUST00000022220 Ccdc47Q9D024 483 aaKnown RBP12.8□□□□□ -0.36
Msh3-201ENSMUST00000022220 Mmel1Q9JLI3 765 aa12.8□□□□□ -0.36
Msh3-201ENSMUST00000022220 Card10P58660 1021 aa12.8□□□□□ -0.36
Msh3-201ENSMUST00000022220 Myom2Q14BI5 1463 aa12.8□□□□□ -0.36
Msh3-201ENSMUST00000022220 Plekhg1F6S200 1446 aa12.8□□□□□ -0.36
Msh3-201ENSMUST00000022220 CebpzP53569 1052 aaKnown RBP12.8□□□□□ -0.36
Msh3-201ENSMUST00000022220 Chl1P70232 1209 aa12.8□□□□□ -0.36
Msh3-201ENSMUST00000022220 Ddb1Q3U1J4 1140 aaKnown RBP12.8□□□□□ -0.36
Msh3-201ENSMUST00000022220 Tmem67Q8BR76 992 aa12.8□□□□□ -0.36
Msh3-201ENSMUST00000022220 Rhot2Q8JZN7 620 aa12.8□□□□□ -0.36
Msh3-201ENSMUST00000022220 RestQ8VIG1 1082 aa12.8□□□□□ -0.36
Msh3-201ENSMUST00000022220 Slx4ipQ9D7Y9 413 aa12.8□□□□□ -0.36
Msh3-201ENSMUST00000022220 Plxnc1Q9QZC2 1574 aa12.79□□□□□ -0.36
Msh3-201ENSMUST00000022220 SfswapQ3USH5 945 aaKnown RBP12.79□□□□□ -0.36
Msh3-201ENSMUST00000022220 Ahdc1Q6PAL7 1594 aaKnown RBP12.79□□□□□ -0.36
Msh3-201ENSMUST00000022220 Hecw1Q8K4P8 1604 aa12.79□□□□□ -0.36
Msh3-201ENSMUST00000022220 Nucb1Q02819 459 aaKnown RBP12.79□□□□□ -0.36
Msh3-201ENSMUST00000022220 Gtf2f1Q3THK3 508 aaKnown RBP12.79□□□□□ -0.36
Msh3-201ENSMUST00000022220 RgmbQ7TQ33 436 aa12.79□□□□□ -0.36
Msh3-201ENSMUST00000022220 Rab3gap1Q80UJ7 981 aa12.79□□□□□ -0.36
Msh3-201ENSMUST00000022220 Ttll7A4Q9F0 912 aa12.79□□□□□ -0.36
Msh3-201ENSMUST00000022220 Mmp8O70138 465 aa12.79□□□□□ -0.36
Msh3-201ENSMUST00000022220 Cct2P80314 535 aaKnown RBP12.79□□□□□ -0.36
Msh3-201ENSMUST00000022220 Znf335A2A5K6 1337 aa12.78□□□□□ -0.36
Msh3-201ENSMUST00000022220 Anxa1P10107 346 aaKnown RBP12.78□□□□□ -0.36
Msh3-201ENSMUST00000022220 TbcaP48428 108 aaKnown RBP12.78□□□□□ -0.36
Msh3-201ENSMUST00000022220 Bach2P97303 839 aa12.78□□□□□ -0.36
Msh3-201ENSMUST00000022220 Pms1Q8K119 917 aa12.78□□□□□ -0.36
Msh3-201ENSMUST00000022220 Krt82Q99M74 516 aa12.78□□□□□ -0.36
Msh3-201ENSMUST00000022220 Cyp27a1Q9DBG1 533 aa12.78□□□□□ -0.36
Msh3-201ENSMUST00000022220 Ncapd2Q8K2Z4 1392 aa12.78□□□□□ -0.36
Msh3-201ENSMUST00000022220 Rbbp8nlA2ABX0 614 aa12.78□□□□□ -0.36
Msh3-201ENSMUST00000022220 Aldh8a1Q8BH00 487 aa12.78□□□□□ -0.36
Msh3-201ENSMUST00000022220 Rbm42Q91V81 474 aaKnown RBP12.78□□□□□ -0.36
Msh3-201ENSMUST00000022220 CenppQ9CZ92 286 aa12.78□□□□□ -0.36
Msh3-201ENSMUST00000022220 Tpm3P21107 285 aaKnown RBP12.78□□□□□ -0.36
Msh3-201ENSMUST00000022220 Prex1Q69ZK0 1650 aa12.77□□□□□ -0.36
Msh3-201ENSMUST00000022220 Pnma3Q8JZW8 466 aa12.77□□□□□ -0.36
Retrieved 100 of 22,080 RNA–protein pairs in 50.6 ms