RNA–Protein interactions for RNA: ENST00000637450.1

CLN6-220, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 3

Gene CLN6, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-220ENST00000637450 SPNS3Q6ZMD2 512 aa17.01■□□□□ 0.31
CLN6-220ENST00000637450 DND1Q8IYX4 353 aaKnown RBP17.01■□□□□ 0.31
CLN6-220ENST00000637450 FBXW8Q8N3Y1 598 aa17.01■□□□□ 0.31
CLN6-220ENST00000637450 L3MBTL4Q8NA19 623 aa17.01■□□□□ 0.31
CLN6-220ENST00000637450 ANP32BQ92688 251 aaKnown RBP17.01■□□□□ 0.31
CLN6-220ENST00000637450 REPS1Q96D71 796 aa17.01■□□□□ 0.31
CLN6-220ENST00000637450 GPR78Q96P69 363 aa17.01■□□□□ 0.31
CLN6-220ENST00000637450 CNPPD1Q9BV87 410 aa17.01■□□□□ 0.31
CLN6-220ENST00000637450 ERVK-6Q9BXR3 956 aa17.01■□□□□ 0.31
CLN6-220ENST00000637450 ZFP64Q9NPA5 681 aa17.01■□□□□ 0.31
CLN6-220ENST00000637450 SNX15Q9NRS6 342 aa17.01■□□□□ 0.31
CLN6-220ENST00000637450 CNIH4Q9P003 139 aa17.01■□□□□ 0.31
CLN6-220ENST00000637450 ERVK-19Q9WJR5 959 aa17.01■□□□□ 0.31
CLN6-220ENST00000637450 CHCHD2Q9Y6H1 151 aaPredicted RBP17.01■□□□□ 0.31
CLN6-220ENST00000637450 A0A0G2JNJ9 132 aa17■□□□□ 0.31
CLN6-220ENST00000637450 GLOD5A6NK44 160 aa17■□□□□ 0.31
CLN6-220ENST00000637450 FOXE1O00358 373 aaPredicted RBP17■□□□□ 0.31
CLN6-220ENST00000637450 TMPRSS11DO60235 418 aa17■□□□□ 0.31
CLN6-220ENST00000637450 OR10H2O60403 315 aa17■□□□□ 0.31
CLN6-220ENST00000637450 KLHL2O95198 593 aa17■□□□□ 0.31
CLN6-220ENST00000637450 FAM58BPP0C7Q3 252 aa17■□□□□ 0.31
CLN6-220ENST00000637450 ENDOUP21128 410 aaKnown RBP17■□□□□ 0.31
CLN6-220ENST00000637450 SERPINB3P29508 390 aa17■□□□□ 0.31
CLN6-220ENST00000637450 CASQ1P31415 396 aa17■□□□□ 0.31
CLN6-220ENST00000637450 GALNSP34059 522 aa17■□□□□ 0.31
CLN6-220ENST00000637450 ZFP36L2P47974 494 aaKnown RBP17■□□□□ 0.31
CLN6-220ENST00000637450 GTF2H2Q13888 395 aa17■□□□□ 0.31
CLN6-220ENST00000637450 WLSQ5T9L3 541 aa17■□□□□ 0.31
CLN6-220ENST00000637450 PRAMEF20Q5VT98 475 aa17■□□□□ 0.31
CLN6-220ENST00000637450 GTF2H2CQ6P1K8 395 aa17■□□□□ 0.31
CLN6-220ENST00000637450 RNF111Q6ZNA4 994 aa17■□□□□ 0.31
CLN6-220ENST00000637450 SLC29A4Q7RTT9 530 aa17■□□□□ 0.31
CLN6-220ENST00000637450 GOLGA7Q7Z5G4 137 aa17■□□□□ 0.31
CLN6-220ENST00000637450 WDR20Q8TBZ3 569 aa17■□□□□ 0.31
CLN6-220ENST00000637450 RIT1Q92963 219 aa17■□□□□ 0.31
CLN6-220ENST00000637450 WWTR1Q9GZV5 400 aa17■□□□□ 0.31
CLN6-220ENST00000637450 ZNF703Q9H7S9 590 aaPredicted RBP17■□□□□ 0.31
CLN6-220ENST00000637450 IPPKQ9H8X2 491 aa17■□□□□ 0.31
CLN6-220ENST00000637450 SPRR3Q9UBC9 169 aa17■□□□□ 0.31
CLN6-220ENST00000637450 Q9UFV3 132 aa17■□□□□ 0.31
CLN6-220ENST00000637450 KCNN3Q9UGI6 736 aa17■□□□□ 0.31
CLN6-220ENST00000637450 BOKQ9UMX3 212 aaPredicted RBP17■□□□□ 0.31
CLN6-220ENST00000637450 RNF11Q9Y3C5 154 aa17■□□□□ 0.31
CLN6-220ENST00000637450 TNPO3Q9Y5L0 923 aaKnown RBP17■□□□□ 0.31
CLN6-220ENST00000637450 A0A096LPK6 155 aa16.99■□□□□ 0.31
CLN6-220ENST00000637450 LRRC3CA6NJW4 275 aa16.99■□□□□ 0.31
CLN6-220ENST00000637450 OR6C76A6NM76 312 aa16.99■□□□□ 0.31
CLN6-220ENST00000637450 CLPSP04118 112 aa16.99■□□□□ 0.31
CLN6-220ENST00000637450 SLC35E2P0CK97 266 aa16.99■□□□□ 0.31
CLN6-220ENST00000637450 NR2F6P10588 404 aa16.99■□□□□ 0.31
CLN6-220ENST00000637450 ADH7P40394 386 aa16.99■□□□□ 0.31
CLN6-220ENST00000637450 NEK2P51955 445 aa16.99■□□□□ 0.31
CLN6-220ENST00000637450 RIPPLY3P57055 190 aa16.99■□□□□ 0.31
CLN6-220ENST00000637450 KCNJ2P63252 427 aa16.99■□□□□ 0.31
CLN6-220ENST00000637450 EBPQ15125 230 aaKnown RBP16.99■□□□□ 0.31
CLN6-220ENST00000637450 METTL2BQ6P1Q9 378 aaKnown RBP16.99■□□□□ 0.31
CLN6-220ENST00000637450 CYP20A1Q6UW02 462 aa16.99■□□□□ 0.31
CLN6-220ENST00000637450 ZNF572Q7Z3I7 529 aaPredicted RBP16.99■□□□□ 0.31
CLN6-220ENST00000637450 LIX1LQ8IVB5 337 aa16.99■□□□□ 0.31
CLN6-220ENST00000637450 CLYBLQ8N0X4 340 aa16.99■□□□□ 0.31
CLN6-220ENST00000637450 LRRC25Q8N386 305 aaPredicted RBP16.99■□□□□ 0.31
CLN6-220ENST00000637450 FAM13CQ8NE31 585 aa16.99■□□□□ 0.31
CLN6-220ENST00000637450 OR10G3Q8NGC4 313 aa16.99■□□□□ 0.31
CLN6-220ENST00000637450 UCN3Q969E3 161 aa16.99■□□□□ 0.31
CLN6-220ENST00000637450 MRRFQ96E11 262 aaKnown RBP16.99■□□□□ 0.31
CLN6-220ENST00000637450 GAL3ST4Q96RP7 486 aa16.99■□□□□ 0.31
CLN6-220ENST00000637450 ZNF559Q9BR84 538 aa16.99■□□□□ 0.31
CLN6-220ENST00000637450 EXO5Q9H790 373 aa16.99■□□□□ 0.31
CLN6-220ENST00000637450 SLC24A3Q9HC58 644 aa16.99■□□□□ 0.31
CLN6-220ENST00000637450 ACKR4Q9NPB9 350 aa16.99■□□□□ 0.31
CLN6-220ENST00000637450 QPCTLQ9NXS2 382 aa16.99■□□□□ 0.31
CLN6-220ENST00000637450 ALKBH4Q9NXW9 302 aa16.99■□□□□ 0.31
CLN6-220ENST00000637450 CNOT11Q9UKZ1 510 aaKnown RBP16.99■□□□□ 0.31
CLN6-220ENST00000637450 PCDHGB3Q9Y5G1 929 aa16.99■□□□□ 0.31
CLN6-220ENST00000637450 PHF3Q92576 2039 aaKnown RBP16.99■□□□□ 0.31
CLN6-220ENST00000637450 HCFC1P51610 2035 aa16.98■□□□□ 0.31
CLN6-220ENST00000637450 C2CD3Q4AC94 2353 aa16.98■□□□□ 0.31
CLN6-220ENST00000637450 SIX3O95343 332 aaPredicted RBP16.98■□□□□ 0.31
CLN6-220ENST00000637450 AIFM1O95831 613 aa16.98■□□□□ 0.31
CLN6-220ENST00000637450 ALDOAP04075 364 aaKnown RBP16.98■□□□□ 0.31
CLN6-220ENST00000637450 GABRA1P14867 456 aa16.98■□□□□ 0.31
CLN6-220ENST00000637450 PIK3CGP48736 1102 aa16.98■□□□□ 0.31
CLN6-220ENST00000637450 NTRK2Q16620 822 aa16.98■□□□□ 0.31
CLN6-220ENST00000637450 C1orf185Q5T7R7 199 aa16.98■□□□□ 0.31
CLN6-220ENST00000637450 CES4AQ5XG92 561 aa16.98■□□□□ 0.31
CLN6-220ENST00000637450 KLC3Q6P597 504 aa16.98■□□□□ 0.31
CLN6-220ENST00000637450 NUDT13Q86X67 352 aa16.98■□□□□ 0.31
CLN6-220ENST00000637450 ZNF441Q8N8Z8 693 aa16.98■□□□□ 0.31
CLN6-220ENST00000637450 WDR41Q9HAD4 459 aa16.98■□□□□ 0.31
CLN6-220ENST00000637450 EML6Q6ZMW3 1958 aa16.97■□□□□ 0.31
CLN6-220ENST00000637450 ESYT3A0FGR9 886 aa16.97■□□□□ 0.31
CLN6-220ENST00000637450 ANKRD33BA6NCL7 494 aa16.97■□□□□ 0.31
CLN6-220ENST00000637450 FAM47E-STBD1D6RA91 191 aa16.97■□□□□ 0.31
CLN6-220ENST00000637450 PGRMC2O15173 223 aa16.97■□□□□ 0.31
CLN6-220ENST00000637450 CLDN9O95484 217 aa16.97■□□□□ 0.31
CLN6-220ENST00000637450 TYK2P29597 1187 aa16.97■□□□□ 0.31
CLN6-220ENST00000637450 SERPINB8P50452 374 aa16.97■□□□□ 0.31
CLN6-220ENST00000637450 DLX5P56178 289 aa16.97■□□□□ 0.31
CLN6-220ENST00000637450 ETF1P62495 437 aaKnown RBP16.97■□□□□ 0.31
CLN6-220ENST00000637450 SLC25A35Q3KQZ1 300 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms