RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 GTPBP2Q9BX10 602 aaKnown RBP15.86■□□□□ 0.13
CLN3-252ENST00000636907 HCN3Q9P1Z3 774 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 RPS6KA6Q9UK32 745 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 ATXN7L1Q9ULK2 861 aaPredicted RBP15.86■□□□□ 0.13
CLN3-252ENST00000636907 AK5Q9Y6K8 562 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 EME2A4GXA9 379 aaPredicted RBP15.86■□□□□ 0.13
CLN3-252ENST00000636907 H3BMH7 237 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 HMGN4O00479 90 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 FGF17O60258 216 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 LDB3O75112 727 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 NSA2O95478 260 aaKnown RBP15.86■□□□□ 0.13
CLN3-252ENST00000636907 LDLRP01130 860 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 SYPP08247 313 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 CPMP14384 443 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 CKMT2P17540 419 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 SKP1P63208 163 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 FOLH1Q04609 750 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 INAVAQ3KP66 663 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 EIF3MQ7L2H7 374 aaKnown RBP15.86■□□□□ 0.13
CLN3-252ENST00000636907 TMPRSS9Q7Z410 1059 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 KAT2AQ92830 837 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 RAB8BQ92930 207 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 COL26A1Q96A83 441 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 MOAP1Q96BY2 351 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 ELP4Q96EB1 424 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 SLC41A2Q96JW4 573 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 CIB1Q99828 191 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 YY1AP1Q9H869 796 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 COQ10BQ9H8M1 238 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 DNAAF2Q9NVR5 837 aaKnown RBP15.86■□□□□ 0.13
CLN3-252ENST00000636907 RP1P56715 2156 aa15.85■□□□□ 0.13
CLN3-252ENST00000636907 MYOCOSA0A1B0GUC4 107 aa15.85■□□□□ 0.13
CLN3-252ENST00000636907 SAC3D1A6NKF1 404 aa15.85■□□□□ 0.13
CLN3-252ENST00000636907 TMEM150CB9EJG8 249 aa15.85■□□□□ 0.13
CLN3-252ENST00000636907 EMC8O43402 210 aa15.85■□□□□ 0.13
CLN3-252ENST00000636907 FHP07954 510 aa15.85■□□□□ 0.13
CLN3-252ENST00000636907 ACADSP16219 412 aa15.85■□□□□ 0.13
CLN3-252ENST00000636907 PORP16435 677 aaPredicted RBP15.85■□□□□ 0.13
CLN3-252ENST00000636907 MATN1P21941 496 aa15.85■□□□□ 0.13
CLN3-252ENST00000636907 PRKAG1P54619 331 aa15.85■□□□□ 0.13
CLN3-252ENST00000636907 CCL7P80098 99 aa15.85■□□□□ 0.13
CLN3-252ENST00000636907 GRM7Q14831 915 aa15.85■□□□□ 0.13
CLN3-252ENST00000636907 CYBRD1Q53TN4 286 aa15.85■□□□□ 0.13
CLN3-252ENST00000636907 NIPAL1Q6NVV3 410 aa15.85■□□□□ 0.13
CLN3-252ENST00000636907 TMEM71Q6P5X7 295 aa15.85■□□□□ 0.13
CLN3-252ENST00000636907 ZNF574Q6ZN55 896 aaPredicted RBP15.85■□□□□ 0.13
CLN3-252ENST00000636907 METTL27Q8N6F8 245 aaPredicted RBP15.85■□□□□ 0.13
CLN3-252ENST00000636907 OR56A1Q8NGH5 318 aa15.85■□□□□ 0.13
CLN3-252ENST00000636907 TANKQ92844 425 aa15.85■□□□□ 0.13
CLN3-252ENST00000636907 ZNF570Q96NI8 536 aa15.85■□□□□ 0.13
CLN3-252ENST00000636907 OR51I1Q9H343 314 aa15.85■□□□□ 0.13
CLN3-252ENST00000636907 ANKRA2Q9H9E1 313 aa15.85■□□□□ 0.13
CLN3-252ENST00000636907 A4GALTQ9NPC4 353 aa15.85■□□□□ 0.13
CLN3-252ENST00000636907 A0A1W2PQM1 296 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 CLOCKO15516 846 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 PCDHGA12O60330 932 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 OR2B3O76000 313 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 GPR75O95800 540 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 RPLP0P05388 317 aaKnown RBP15.84■□□□□ 0.13
CLN3-252ENST00000636907 OR12D1P0DN82 309 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 FOLR1P15328 257 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 ZNF26P17031 533 aaPredicted RBP15.84■□□□□ 0.13
CLN3-252ENST00000636907 NELFEP18615 380 aaKnown RBP15.84■□□□□ 0.13
CLN3-252ENST00000636907 ATP6V1C1P21283 382 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 MPLP40238 635 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 MRPS35P82673 323 aaKnown RBP15.84■□□□□ 0.13
CLN3-252ENST00000636907 PRR5P85299 388 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 MAT1AQ00266 395 aaKnown RBP15.84■□□□□ 0.13
CLN3-252ENST00000636907 SQSTM1Q13501 440 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 LASP1Q14847 261 aaKnown RBP15.84■□□□□ 0.13
CLN3-252ENST00000636907 TMTC4Q5T4D3 741 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 INTS11Q5TA45 600 aaKnown RBP15.84■□□□□ 0.13
CLN3-252ENST00000636907 BHLHB9Q6PI77 547 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 CCDC80Q76M96 950 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 VTCN1Q7Z7D3 282 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 KMT5CQ86Y97 462 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 EPHX4Q8IUS5 362 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 GALNT4Q8N4A0 578 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 NUP43Q8NFH3 380 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 OR5D16Q8NGK9 328 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 OR1L3Q8NH93 324 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 NAF1Q96HR8 494 aaKnown RBP15.84■□□□□ 0.13
CLN3-252ENST00000636907 HSH2DQ96JZ2 352 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 SLC29A1Q99808 456 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 RBCK1Q9BYM8 510 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 ARRDC1-AS1Q9H2J1 176 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 ZNF768Q9H5H4 540 aaKnown RBP15.84■□□□□ 0.13
CLN3-252ENST00000636907 C3orf14Q9HBI5 128 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 ENAMQ9NRM1 1142 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 CNOT11Q9UKZ1 510 aaKnown RBP15.84■□□□□ 0.13
CLN3-252ENST00000636907 ANGPT4Q9Y264 503 aa15.84■□□□□ 0.13
CLN3-252ENST00000636907 TMEM229AB2RXF0 380 aa15.83■□□□□ 0.13
CLN3-252ENST00000636907 DEAF1O75398 565 aaPredicted RBP15.83■□□□□ 0.13
CLN3-252ENST00000636907 OPN1SWP03999 348 aa15.83■□□□□ 0.13
CLN3-252ENST00000636907 SEMG1P04279 462 aa15.83■□□□□ 0.13
CLN3-252ENST00000636907 HMGN2P05204 90 aaKnown RBP15.83■□□□□ 0.13
CLN3-252ENST00000636907 BCHEP06276 602 aa15.83■□□□□ 0.13
CLN3-252ENST00000636907 TFPTP0C1Z6 253 aa15.83■□□□□ 0.13
CLN3-252ENST00000636907 RNH1P13489 461 aaKnown RBP15.83■□□□□ 0.13
CLN3-252ENST00000636907 AVPR1BP47901 424 aa15.83■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms