RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 MYO1HQ8N1T3 1032 aa13.18□□□□□ -0.3
CLN3-249ENST00000636685 PPWD1Q96BP3 646 aaKnown RBP13.18□□□□□ -0.3
CLN3-249ENST00000636685 FBXL8Q96CD0 374 aa13.18□□□□□ -0.3
CLN3-249ENST00000636685 TRMT61AQ96FX7 289 aaKnown RBP13.18□□□□□ -0.3
CLN3-249ENST00000636685 PGM2Q96G03 612 aa13.18□□□□□ -0.3
CLN3-249ENST00000636685 SERINC2Q96SA4 455 aa13.18□□□□□ -0.3
CLN3-249ENST00000636685 TEX10Q9NXF1 929 aaPredicted RBP13.18□□□□□ -0.3
CLN3-249ENST00000636685 FETUBQ9UGM5 382 aa13.18□□□□□ -0.3
CLN3-249ENST00000636685 PACSIN2Q9UNF0 486 aaPredicted RBP13.18□□□□□ -0.3
CLN3-249ENST00000636685 DTX4Q9Y2E6 619 aa13.18□□□□□ -0.3
CLN3-249ENST00000636685 OVOL3O00110 214 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 TP53I11O14683 189 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 GUCA1CO95843 209 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 TBX6O95947 436 aaPredicted RBP13.17□□□□□ -0.3
CLN3-249ENST00000636685 MBD3O95983 291 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 TPM1P09493 284 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 COX7A2P14406 83 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 PTPN6P29350 595 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 CDKN1AP38936 164 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 SLC1A2P43004 574 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 KCNJ5P48544 419 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 STARP49675 285 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 MTTPP55157 894 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 NAP1L1P55209 391 aaKnown RBP13.17□□□□□ -0.3
CLN3-249ENST00000636685 BASP1P80723 227 aaKnown RBP13.17□□□□□ -0.3
CLN3-249ENST00000636685 SNX1Q13596 522 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 THOC5Q13769 683 aaKnown RBP13.17□□□□□ -0.3
CLN3-249ENST00000636685 RCN2Q14257 317 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 RPS6KA2Q15349 733 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 TIGD3Q6B0B8 471 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 PAQR3Q6TCH7 311 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 SBSNQ6UWP8 590 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 DNM1P46Q6ZS02 220 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 THOC6Q86W42 341 aaKnown RBP13.17□□□□□ -0.3
CLN3-249ENST00000636685 CCDC89Q8N998 374 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 OR2L5Q8NG80 312 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 SPPL2AQ8TCT8 520 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 C1orf54Q8WWF1 131 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 AKAP1Q92667 903 aaKnown RBP eCLIP13.17□□□□□ -0.3
CLN3-249ENST00000636685 LINGO1Q96FE5 620 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 DGAT2Q96PD7 388 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 MAPKAP1Q9BPZ7 522 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 SLC39A3Q9BRY0 314 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 WWTR1Q9GZV5 400 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 COPS7BQ9H9Q2 264 aaPredicted RBP13.17□□□□□ -0.3
CLN3-249ENST00000636685 ELOVL5Q9NYP7 299 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 COMMD10Q9Y6G5 202 aa13.17□□□□□ -0.3
CLN3-249ENST00000636685 TENM1Q9UKZ4 2725 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 GOLGA6L19H0YKK7 550 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 AP3B1O00203 1094 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 PLOD2O00469 737 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 NDUFS7O75251 213 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 HAUS5O94927 633 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 IGHV4-39P01824 125 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 TPM3P06753 285 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 GCKP35557 465 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 CASP3P42574 277 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 STT3AP46977 705 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 SIRPAP78324 504 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 GPS1Q13098 491 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 DHX34Q14147 1143 aaKnown RBP13.16□□□□□ -0.3
CLN3-249ENST00000636685 TRIM40Q6P9F5 258 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 ABHD17CQ6PCB6 329 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 SLC29A4Q7RTT9 530 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 TRIM42Q8IWZ5 723 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 ARIH2OSQ8N7S6 290 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 GPATCH11Q8N954 259 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 CTHRC1Q96CG8 243 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 TMEM41AQ96HV5 264 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 FBXL20Q96IG2 436 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 NDNQ99608 321 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 KLHL4Q9C0H6 718 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 REXO4Q9GZR2 422 aaKnown RBP13.16□□□□□ -0.3
CLN3-249ENST00000636685 SHARPINQ9H0F6 387 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 TMEM160Q9NX00 188 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 LPAR3Q9UBY5 353 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 SLC22A14Q9Y267 594 aa13.16□□□□□ -0.3
CLN3-249ENST00000636685 TCRBV7S3A2A0A539 114 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 GRID2IPA4D2P6 1211 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 PABPN1LA6NDY0 278 aaKnown RBP13.15□□□□□ -0.3
CLN3-249ENST00000636685 FRG2CA6NGY1 282 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 FGF17O60258 216 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 SOD3P08294 240 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 CHMP24386 653 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 AP1S2P56377 157 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 HERVK_113P63132 956 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 ERVK-8P63133 956 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 EBPQ15125 230 aaKnown RBP13.15□□□□□ -0.3
CLN3-249ENST00000636685 KCTD19Q17RG1 926 aaPredicted RBP13.15□□□□□ -0.3
CLN3-249ENST00000636685 TMEM249Q2WGJ8 235 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 ADPRMQ3LIE5 342 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 KBTBD12Q3ZCT8 623 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 CASC4Q6P4E1 433 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 ENPP6Q6UWR7 440 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 ANGPTL8Q6UXH0 198 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 P4HA3Q7Z4N8 544 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 TAGAPQ8N103 731 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 LRRC57Q8N9N7 239 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 CAVIN3Q969G5 261 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 GTPBP3Q969Y2 492 aaKnown RBP13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms