RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 LAPTM5Q13571 262 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 DDX39BQ13838 428 aaKnown RBP4.94□□□□□ -1.62
SHMT1-211ENST00000618902 RUNX2Q13950 521 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 CCNIQ14094 377 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 UBAP2LQ14157 1087 aaKnown RBP4.94□□□□□ -1.62
SHMT1-211ENST00000618902 ERV3-1Q14264 604 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 MYBPC3Q14896 1274 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 INAQ16352 499 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 RBBP7Q16576 425 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 NKG7Q16617 165 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 SMU1Q2TAY7 513 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 GGTA1PQ4G0N0 100 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 DEFB134Q4QY38 66 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 SGO1Q5FBB7 561 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 VWA2Q5GFL6 755 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 PAGE2BQ5JRK9 111 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 VWA5B1Q5TIE3 1220 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 MLIPQ5VWP3 458 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 LIPJQ5W064 366 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 MED27Q6P2C8 311 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 ABHD17CQ6PCB6 329 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 PCSK4Q6UW60 755 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 SCIMPQ6UWF3 145 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 UGT2A3Q6UWM9 527 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 B3GNT6Q6ZMB0 384 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 SHISA6Q6ZSJ9 500 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 GPRIN3Q6ZVF9 776 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 SPATA19Q7Z5L4 167 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 ARPINQ7Z6K5 226 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 LAPTM4BQ86VI4 370 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 TICAM1Q8IUC6 712 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 ZC3H7AQ8IWR0 971 aaKnown RBP4.94□□□□□ -1.62
SHMT1-211ENST00000618902 KRT78Q8N1N4 520 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 CDYL2Q8N8U2 506 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 TEX19Q8NA77 164 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 TMEM52Q8NDY8 209 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 DNAJB8Q8NHS0 232 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 PNPT1Q8TCS8 783 aaKnown RBP4.94□□□□□ -1.62
SHMT1-211ENST00000618902 UCN3Q969E3 161 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 MTFMTQ96DP5 389 aaKnown RBP4.94□□□□□ -1.62
SHMT1-211ENST00000618902 LMF1Q96S06 567 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 MTERF1Q99551 399 aaKnown RBP4.94□□□□□ -1.62
SHMT1-211ENST00000618902 NPLQ9BXD5 320 aaPredicted RBP4.94□□□□□ -1.62
SHMT1-211ENST00000618902 ROGDIQ9GZN7 287 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 OCEL1Q9H607 264 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 WDR41Q9HAD4 459 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 SPAG4Q9NPE6 437 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 PRDM7Q9NQW5 492 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 LANCL2Q9NS86 450 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 PTTG2Q9NZH5 202 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 HCN3Q9P1Z3 774 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 C19orf25Q9UFG5 118 aaPredicted RBP4.94□□□□□ -1.62
SHMT1-211ENST00000618902 TEKT2Q9UIF3 430 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 TSC22D4Q9Y3Q8 395 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 ANGPTL3Q9Y5C1 460 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 PCDHGB6Q9Y5F9 930 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 CLDN16Q9Y5I7 305 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 PTGDR2Q9Y5Y4 395 aa4.94□□□□□ -1.62
SHMT1-211ENST00000618902 HIVEP3Q5T1R4 2406 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 LOC102723996A0A087X1L8 192 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 PRSS51A0A1B0GVH4 220 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 TCRBV3S1A0A5B6 114 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 WASHC1A8K0Z3 465 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 PLPP1O14494 284 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 ERI3O43414 337 aaKnown RBP4.93□□□□□ -1.62
SHMT1-211ENST00000618902 CHST10O43529 356 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 TMPRSS11DO60235 418 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 DNAJB5O75953 348 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 SCELO95171 688 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 TACC2O95359 2948 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 BMP10O95393 424 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 ESRRBO95718 433 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 MLYCDO95822 493 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 CHEK2O96017 543 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 OTCP00480 354 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 PDYNP01213 254 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 JUNP05412 331 aaKnown RBP4.93□□□□□ -1.62
SHMT1-211ENST00000618902 HSD17B1P14061 328 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 FBLP22087 321 aaKnown RBP4.93□□□□□ -1.62
SHMT1-211ENST00000618902 JAK1P23458 1154 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 ATP5A1P25705 553 aaKnown RBP4.93□□□□□ -1.62
SHMT1-211ENST00000618902 CERS1P27544 350 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 BSGP35613 385 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 PIK3CBP42338 1070 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 CD97P48960 835 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 NUDT2P50583 147 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 PLA2G16P53816 162 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 NUP107P57740 925 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 STXBP1P61764 594 aaKnown RBP4.93□□□□□ -1.62
SHMT1-211ENST00000618902 RGS1Q08116 209 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 TGM3Q08188 693 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 EPS8Q12929 822 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 ABRAXAS2Q15018 415 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 HIST2H2ACQ16777 129 aaPredicted RBP4.93□□□□□ -1.62
SHMT1-211ENST00000618902 DEFB109BQ30KR1 87 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 GRAMD1BQ3KR37 738 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 UGT3A2Q3SY77 523 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 SLC9B1Q4ZJI4 515 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 MTX3Q5HYI7 312 aa4.93□□□□□ -1.62
SHMT1-211ENST00000618902 DCAF10Q5QP82 559 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms