RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 TESCQ96BS2 214 aa18.43■□□□□ 0.54
UPF3A-211ENST00000618700 PPCDCQ96CD2 204 aa18.43■□□□□ 0.54
UPF3A-211ENST00000618700 TEX37Q96LM6 180 aa18.43■□□□□ 0.54
UPF3A-211ENST00000618700 IMMP1LQ96LU5 166 aa18.43■□□□□ 0.54
UPF3A-211ENST00000618700 RILPQ96NA2 401 aa18.43■□□□□ 0.54
UPF3A-211ENST00000618700 CATSPER2Q96P56 530 aa18.43■□□□□ 0.54
UPF3A-211ENST00000618700 DGAT2Q96PD7 388 aa18.43■□□□□ 0.54
UPF3A-211ENST00000618700 DPY30Q9C005 99 aa18.43■□□□□ 0.54
UPF3A-211ENST00000618700 ZNF385DQ9H6B1 395 aa18.43■□□□□ 0.54
UPF3A-211ENST00000618700 MAPRE3Q9UPY8 281 aa18.43■□□□□ 0.54
UPF3A-211ENST00000618700 ENTPD4Q9Y227 616 aa18.43■□□□□ 0.54
UPF3A-211ENST00000618700 ZNF780BQ9Y6R6 833 aa18.43■□□□□ 0.54
UPF3A-211ENST00000618700 PKD1L2Q7Z442 2459 aa18.42■□□□□ 0.54
UPF3A-211ENST00000618700 SAGE2PA6NJ88 616 aa18.42■□□□□ 0.54
UPF3A-211ENST00000618700 PEX12O00623 359 aa18.42■□□□□ 0.54
UPF3A-211ENST00000618700 SEC24DO94855 1032 aaPredicted RBP18.42■□□□□ 0.54
UPF3A-211ENST00000618700 ATP1B1P05026 303 aa18.42■□□□□ 0.54
UPF3A-211ENST00000618700 CSNK2A2P19784 350 aaPredicted RBP18.42■□□□□ 0.54
UPF3A-211ENST00000618700 GALNSP34059 522 aa18.42■□□□□ 0.54
UPF3A-211ENST00000618700 FEN1P39748 380 aaKnown RBP18.42■□□□□ 0.54
UPF3A-211ENST00000618700 ATP4BP51164 291 aa18.42■□□□□ 0.54
UPF3A-211ENST00000618700 UFM1P61960 85 aa18.42■□□□□ 0.54
UPF3A-211ENST00000618700 IRX1P78414 480 aaPredicted RBP18.42■□□□□ 0.54
UPF3A-211ENST00000618700 METTL21CQ5VZV1 264 aa18.42■□□□□ 0.54
UPF3A-211ENST00000618700 PAPD4Q6PIY7 484 aaKnown RBP18.42■□□□□ 0.54
UPF3A-211ENST00000618700 DGAT2L6Q6ZPD8 337 aa18.42■□□□□ 0.54
UPF3A-211ENST00000618700 NDUFAF7Q7L592 441 aa18.42■□□□□ 0.54
UPF3A-211ENST00000618700 LRRC25Q8N386 305 aaPredicted RBP18.42■□□□□ 0.54
UPF3A-211ENST00000618700 OR7A2PQ8NGA2 310 aa18.42■□□□□ 0.54
UPF3A-211ENST00000618700 SUN3Q8TAQ9 357 aa18.42■□□□□ 0.54
UPF3A-211ENST00000618700 PTPMT1Q8WUK0 201 aaPredicted RBP18.42■□□□□ 0.54
UPF3A-211ENST00000618700 COQ8BQ96D53 544 aa18.42■□□□□ 0.54
UPF3A-211ENST00000618700 LPAR4Q99677 370 aa18.42■□□□□ 0.54
UPF3A-211ENST00000618700 TUBB6Q9BUF5 446 aa18.42■□□□□ 0.54
UPF3A-211ENST00000618700 FAM107BQ9H098 131 aa18.42■□□□□ 0.54
UPF3A-211ENST00000618700 CLMPQ9H6B4 373 aa18.42■□□□□ 0.54
UPF3A-211ENST00000618700 SLAMF7Q9NQ25 335 aa18.42■□□□□ 0.54
UPF3A-211ENST00000618700 PNO1Q9NRX1 252 aaKnown RBP18.42■□□□□ 0.54
UPF3A-211ENST00000618700 GIMAP4Q9NUV9 329 aa18.42■□□□□ 0.54
UPF3A-211ENST00000618700 ZIM2Q9NZV7 527 aa18.42■□□□□ 0.54
UPF3A-211ENST00000618700 G3BP2Q9UN86 482 aaKnown RBP18.42■□□□□ 0.54
UPF3A-211ENST00000618700 COPG1Q9Y678 874 aaKnown RBP18.42■□□□□ 0.54
UPF3A-211ENST00000618700 LOC400499M0QZD8 3231 aa18.42■□□□□ 0.54
UPF3A-211ENST00000618700 DSPP15924 2871 aaKnown RBP18.42■□□□□ 0.54
UPF3A-211ENST00000618700 NSG1A0A0A6YYJ2 146 aa18.41■□□□□ 0.54
UPF3A-211ENST00000618700 MYO1GB0I1T2 1018 aa18.41■□□□□ 0.54
UPF3A-211ENST00000618700 SNX3O60493 162 aa18.41■□□□□ 0.54
UPF3A-211ENST00000618700 IFNA16P05015 189 aa18.41■□□□□ 0.54
UPF3A-211ENST00000618700 LAMP1P11279 417 aa18.41■□□□□ 0.54
UPF3A-211ENST00000618700 COX7A2P14406 83 aa18.41■□□□□ 0.54
UPF3A-211ENST00000618700 DDX5P17844 614 aaKnown RBP18.41■□□□□ 0.54
UPF3A-211ENST00000618700 GPX3P22352 226 aa18.41■□□□□ 0.54
UPF3A-211ENST00000618700 IL12AP29459 219 aa18.41■□□□□ 0.54
UPF3A-211ENST00000618700 FRKP42685 505 aaPredicted RBP18.41■□□□□ 0.54
UPF3A-211ENST00000618700 CLNS1AP54105 237 aaKnown RBP18.41■□□□□ 0.54
UPF3A-211ENST00000618700 SPRED3Q2MJR0 410 aa18.41■□□□□ 0.54
UPF3A-211ENST00000618700 DCAF10Q5QP82 559 aa18.41■□□□□ 0.54
UPF3A-211ENST00000618700 MIER2Q8N344 545 aa18.41■□□□□ 0.54
UPF3A-211ENST00000618700 NFAM1Q8NET5 270 aaPredicted RBP18.41■□□□□ 0.54
UPF3A-211ENST00000618700 OR14A16Q8NHC5 309 aa18.41■□□□□ 0.54
UPF3A-211ENST00000618700 PPWD1Q96BP3 646 aaKnown RBP18.41■□□□□ 0.54
UPF3A-211ENST00000618700 ELAC2Q9BQ52 826 aaKnown RBP18.41■□□□□ 0.54
UPF3A-211ENST00000618700 EPN3Q9H201 632 aa18.41■□□□□ 0.54
UPF3A-211ENST00000618700 SH3BP4Q9P0V3 963 aa18.41■□□□□ 0.54
UPF3A-211ENST00000618700 PPIEQ9UNP9 301 aaKnown RBP18.41■□□□□ 0.54
UPF3A-211ENST00000618700 TRIM33Q9UPN9 1127 aa18.41■□□□□ 0.54
UPF3A-211ENST00000618700 MAN2B2Q9Y2E5 1009 aa18.41■□□□□ 0.54
UPF3A-211ENST00000618700 A8MUA0 341 aa18.4■□□□□ 0.54
UPF3A-211ENST00000618700 PDPK1O15530 556 aa18.4■□□□□ 0.54
UPF3A-211ENST00000618700 OR10H2O60403 315 aa18.4■□□□□ 0.54
UPF3A-211ENST00000618700 NTSP30990 170 aa18.4■□□□□ 0.54
UPF3A-211ENST00000618700 NME5P56597 212 aa18.4■□□□□ 0.54
UPF3A-211ENST00000618700 SLC26A5P58743 744 aa18.4■□□□□ 0.54
UPF3A-211ENST00000618700 STX1BP61266 288 aa18.4■□□□□ 0.54
UPF3A-211ENST00000618700 RPS6KA2Q15349 733 aa18.4■□□□□ 0.54
UPF3A-211ENST00000618700 DPY19L1Q2PZI1 675 aa18.4■□□□□ 0.54
UPF3A-211ENST00000618700 CPTPQ5TA50 214 aa18.4■□□□□ 0.54
UPF3A-211ENST00000618700 PLAG1Q6DJT9 500 aa18.4■□□□□ 0.54
UPF3A-211ENST00000618700 CPLX4Q7Z7G2 160 aa18.4■□□□□ 0.54
UPF3A-211ENST00000618700 TMEM102Q8N9M5 508 aaPredicted RBP18.4■□□□□ 0.54
UPF3A-211ENST00000618700 DAZLQ92904 295 aaKnown RBP18.4■□□□□ 0.54
UPF3A-211ENST00000618700 CIDECQ96AQ7 238 aaPredicted RBP18.4■□□□□ 0.54
UPF3A-211ENST00000618700 RBM18Q96H35 190 aaKnown RBP18.4■□□□□ 0.54
UPF3A-211ENST00000618700 FER1L6-AS2Q96M78 137 aa18.4■□□□□ 0.54
UPF3A-211ENST00000618700 PRPF18Q99633 342 aaKnown RBP18.4■□□□□ 0.54
UPF3A-211ENST00000618700 ZNF160Q9HCG1 818 aa18.4■□□□□ 0.54
UPF3A-211ENST00000618700 ATAD3AQ9NVI7 634 aa18.4■□□□□ 0.54
UPF3A-211ENST00000618700 CACNA1BQ00975 2339 aa18.4■□□□□ 0.54
UPF3A-211ENST00000618700 C17orf105B2RV13 164 aa18.39■□□□□ 0.53
UPF3A-211ENST00000618700 MASP2O00187 686 aa18.39■□□□□ 0.53
UPF3A-211ENST00000618700 SLC22A3O75751 556 aa18.39■□□□□ 0.53
UPF3A-211ENST00000618700 DDAH2O95865 285 aa18.39■□□□□ 0.53
UPF3A-211ENST00000618700 SOX18P35713 384 aa18.39■□□□□ 0.53
UPF3A-211ENST00000618700 ZFP36L2P47974 494 aaKnown RBP18.39■□□□□ 0.53
UPF3A-211ENST00000618700 RRADP55042 308 aa18.39■□□□□ 0.53
UPF3A-211ENST00000618700 CXADRP78310 365 aa18.39■□□□□ 0.53
UPF3A-211ENST00000618700 Q0VFX4 171 aa18.39■□□□□ 0.53
UPF3A-211ENST00000618700 SQLEQ14534 574 aa18.39■□□□□ 0.53
UPF3A-211ENST00000618700 LTB4RQ15722 352 aa18.39■□□□□ 0.53
UPF3A-211ENST00000618700 EXT1Q16394 746 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms