RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 ACVR1BP36896 505 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 DEFA5Q01523 94 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 DHCR24Q15392 516 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 PAQR9Q6ZVX9 377 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 ASPGQ86U10 573 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 KLBQ86Z14 1044 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 DCP2Q8IU60 420 aaKnown RBP13.38□□□□□ -0.27
CPSF1-212ENST00000616140 OR4N5Q8IXE1 308 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 PNLDC1Q8NA58 520 aaKnown RBP13.38□□□□□ -0.27
CPSF1-212ENST00000616140 GPR26Q8NDV2 337 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 OR9Q2Q8NGE9 314 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 GAS2L1Q99501 681 aaPredicted RBP13.38□□□□□ -0.27
CPSF1-212ENST00000616140 SDHAF3Q9NRP4 125 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 AGPAT4Q9NRZ5 378 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 NUDT15Q9NV35 164 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 RIMS3Q9UJD0 308 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 NOP16Q9Y3C1 178 aaKnown RBP13.38□□□□□ -0.27
CPSF1-212ENST00000616140 CLCA1A8K7I4 914 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 LRRN3E7EW58 273 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 HSD11B1P28845 292 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 MAPK14Q16539 360 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 ZNF181Q2M3W8 571 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 PROX2Q3B8N5 592 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 TMEM17Q86X19 198 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 FOXRED2Q8IWF2 684 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 MMABQ96EY8 250 aaPredicted RBP13.38□□□□□ -0.27
CPSF1-212ENST00000616140 ZBED3Q96IU2 234 aaPredicted RBP13.38□□□□□ -0.27
CPSF1-212ENST00000616140 EGLN2Q96KS0 407 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 POLDIP3Q9BY77 421 aaKnown RBP13.38□□□□□ -0.27
CPSF1-212ENST00000616140 LRRN3Q9H3W5 708 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 RNF186Q9NXI6 227 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 KANTRA0A1W2PQU2 76 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 MAPK3P27361 379 aaPredicted RBP13.38□□□□□ -0.27
CPSF1-212ENST00000616140 VIPR2P41587 438 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 RGRP47804 291 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 MAN2A2P49641 1150 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 RAB33AQ14088 237 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 EIF4HQ15056 248 aaKnown RBP13.38□□□□□ -0.27
CPSF1-212ENST00000616140 UGT3A2Q3SY77 523 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 SLC25A25Q6KCM7 469 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 UBE2Q1Q7Z7E8 422 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 ANKRD13BQ86YJ7 626 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 ARRDC2Q8TBH0 407 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 C16orf78Q8WTQ4 265 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 ECHDC3Q96DC8 303 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 TMEM246Q9BRR3 403 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 IL20RAQ9UHF4 553 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 PCDHGA8Q9Y5G5 932 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 IRS2Q9Y4H2 1338 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 TCRBV3S1A0A5B6 114 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 NPIPA5E9PKD4 350 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 EEF1E1O43324 174 aaKnown RBP13.37□□□□□ -0.27
CPSF1-212ENST00000616140 GP1BBP13224 206 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 GPR4P46093 362 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 MTNR1AP48039 350 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 RPS21P63220 83 aaKnown RBP13.37□□□□□ -0.27
CPSF1-212ENST00000616140 RGNQ15493 299 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 TIGD4Q8IY51 512 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 SLC44A3Q8N4M1 653 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 METTL27Q8N6F8 245 aaPredicted RBP13.37□□□□□ -0.27
CPSF1-212ENST00000616140 DENND6BQ8NEG7 585 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 SETD6Q8TBK2 473 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 DNAJA3Q96EY1 480 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 HIST1H2AAQ96QV6 131 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 TP63Q9H3D4 680 aaPredicted RBP13.37□□□□□ -0.27
CPSF1-212ENST00000616140 CSNK1G1Q9HCP0 422 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 NPIPA1Q9UND3 350 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 ZSCAN5BA6NJL1 495 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 ADH1BP00325 375 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 NDUFV2P19404 249 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 GABRB3P28472 473 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 OPRL1P41146 370 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 GAS6Q14393 721 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 GK3PQ14409 553 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 PGM2L1Q6PCE3 622 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 MSANTD1Q6ZTZ1 278 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 ZNF227Q86WZ6 799 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 CNTN4Q8IWV2 1026 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 SPERTQ8NA61 448 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 KLRF1Q9NZS2 232 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 GPR52Q9Y2T5 361 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 C5P01031 1676 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 LOC285095A0A1B0GVY8 99 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 CD8B2A6NJW9 211 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 ZNF878C9JN71 531 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 LATO43561 262 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 CD8BP10966 210 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 SIM1P81133 766 aaPredicted RBP13.37□□□□□ -0.27
CPSF1-212ENST00000616140 ATXN7L3Q14CW9 347 aaPredicted RBP13.37□□□□□ -0.27
CPSF1-212ENST00000616140 FIGNL1Q6PIW4 674 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 NCCRP1Q6ZVX7 275 aaPredicted RBP13.37□□□□□ -0.27
CPSF1-212ENST00000616140 ZNF550Q7Z398 422 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 ASCC1Q8N9N2 400 aaKnown RBP13.37□□□□□ -0.27
CPSF1-212ENST00000616140 RIT1Q92963 219 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 PTCHD1Q96NR3 888 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 SLC2A11Q9BYW1 496 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 DCAF13Q9NV06 445 aaKnown RBP13.37□□□□□ -0.27
CPSF1-212ENST00000616140 SLAMF8Q9P0V8 285 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 USP3Q9Y6I4 520 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 SOBPA7XYQ1 873 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms