RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 WNT3P56703 355 aa13.76□□□□□ -0.21
CD48-203ENST00000613788 PHC1P78364 1004 aa13.76□□□□□ -0.21
CD48-203ENST00000613788 STX5Q13190 355 aa13.76□□□□□ -0.21
CD48-203ENST00000613788 CYLC2Q14093 348 aaPredicted RBP13.76□□□□□ -0.21
CD48-203ENST00000613788 ELAVL1Q15717 326 aaKnown RBP13.76□□□□□ -0.21
CD48-203ENST00000613788 VPS26BQ4G0F5 336 aa13.76□□□□□ -0.21
CD48-203ENST00000613788 TIGD2Q4W5G0 525 aa13.76□□□□□ -0.21
CD48-203ENST00000613788 C6orf163Q5TEZ5 329 aa13.76□□□□□ -0.21
CD48-203ENST00000613788 FAM69BQ5VUD6 431 aa13.76□□□□□ -0.21
CD48-203ENST00000613788 FAM91A1Q658Y4 838 aa13.76□□□□□ -0.21
CD48-203ENST00000613788 CPZQ66K79 652 aa13.76□□□□□ -0.21
CD48-203ENST00000613788 CPEB2Q7Z5Q1 589 aaKnown RBP13.76□□□□□ -0.21
CD48-203ENST00000613788 RAB43Q86YS6 212 aa13.76□□□□□ -0.21
CD48-203ENST00000613788 TMEM151BQ8IW70 566 aa13.76□□□□□ -0.21
CD48-203ENST00000613788 FITM2Q8N6M3 262 aa13.76□□□□□ -0.21
CD48-203ENST00000613788 VPS33AQ96AX1 596 aa13.76□□□□□ -0.21
CD48-203ENST00000613788 PPWD1Q96BP3 646 aaKnown RBP13.76□□□□□ -0.21
CD48-203ENST00000613788 NAF1Q96HR8 494 aaKnown RBP13.76□□□□□ -0.21
CD48-203ENST00000613788 AMDHD1Q96NU7 426 aa13.76□□□□□ -0.21
CD48-203ENST00000613788 IP6K3Q96PC2 410 aa13.76□□□□□ -0.21
CD48-203ENST00000613788 GLIPR2Q9H4G4 154 aa13.76□□□□□ -0.21
CD48-203ENST00000613788 BTNL2Q9UIR0 455 aa13.76□□□□□ -0.21
CD48-203ENST00000613788 NDUFAF1Q9Y375 327 aa13.76□□□□□ -0.21
CD48-203ENST00000613788 CLCA3PQ9Y6N3 262 aa13.76□□□□□ -0.21
CD48-203ENST00000613788 LOC102723996A0A087X1L8 192 aa13.75□□□□□ -0.21
CD48-203ENST00000613788 A0A1W2PS29 197 aa13.75□□□□□ -0.21
CD48-203ENST00000613788 MED19A0JLT2 244 aaPredicted RBP13.75□□□□□ -0.21
CD48-203ENST00000613788 CAPN14A8MX76 684 aa13.75□□□□□ -0.21
CD48-203ENST00000613788 ANGPT2O15123 496 aa13.75□□□□□ -0.21
CD48-203ENST00000613788 SCN2BO60939 215 aa13.75□□□□□ -0.21
CD48-203ENST00000613788 SLITRK5O94991 958 aa13.75□□□□□ -0.21
CD48-203ENST00000613788 PRDX6P30041 224 aa13.75□□□□□ -0.21
CD48-203ENST00000613788 OTX2P32243 289 aa13.75□□□□□ -0.21
CD48-203ENST00000613788 GPC1P35052 558 aa13.75□□□□□ -0.21
CD48-203ENST00000613788 SFT2D3Q587I9 215 aa13.75□□□□□ -0.21
CD48-203ENST00000613788 LANCL3Q6ZV70 420 aa13.75□□□□□ -0.21
CD48-203ENST00000613788 TRPM8Q7Z2W7 1104 aa13.75□□□□□ -0.21
CD48-203ENST00000613788 VASH2Q86V25 355 aa13.75□□□□□ -0.21
CD48-203ENST00000613788 SUN3Q8TAQ9 357 aa13.75□□□□□ -0.21
CD48-203ENST00000613788 DAZLQ92904 295 aaKnown RBP13.75□□□□□ -0.21
CD48-203ENST00000613788 RIT1Q92963 219 aa13.75□□□□□ -0.21
CD48-203ENST00000613788 ITCHQ96J02 903 aa13.75□□□□□ -0.21
CD48-203ENST00000613788 LPAR4Q99677 370 aa13.75□□□□□ -0.21
CD48-203ENST00000613788 SLAMF7Q9NQ25 335 aa13.75□□□□□ -0.21
CD48-203ENST00000613788 SLC52A3Q9NQ40 469 aa13.75□□□□□ -0.21
CD48-203ENST00000613788 LEF1Q9UJU2 399 aaPredicted RBP13.75□□□□□ -0.21
CD48-203ENST00000613788 HS3ST3B1Q9Y662 390 aa13.75□□□□□ -0.21
CD48-203ENST00000613788 MRPS18BQ9Y676 258 aaKnown RBP13.75□□□□□ -0.21
CD48-203ENST00000613788 BBIP1A8MTZ0 92 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 A8MUA0 341 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 C17orf105B2RV13 164 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 RRP8O43159 456 aaKnown RBP13.74□□□□□ -0.21
CD48-203ENST00000613788 KLK10O43240 276 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 COX4I1P13073 169 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 CAPN3P20807 821 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 EFNA1P20827 205 aaPredicted RBP13.74□□□□□ -0.21
CD48-203ENST00000613788 DUSP2Q05923 314 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 MAP4K2Q12851 820 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 HSPB3Q12988 150 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 TERF2Q15554 542 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 MMEL1Q495T6 779 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 ZNF551Q7Z340 670 aaPredicted RBP13.74□□□□□ -0.21
CD48-203ENST00000613788 ANKRD46Q86W74 232 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 SNX32Q86XE0 403 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 TREML1Q86YW5 311 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 GALNT12Q8IXK2 581 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 OR14A16Q8NHC5 309 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 CCDC115Q96NT0 180 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 PANX1Q96RD7 426 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 CCNL2Q96S94 520 aaPredicted RBP13.74□□□□□ -0.21
CD48-203ENST00000613788 CXorf21Q9HAI6 301 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 NEUROD4Q9HD90 331 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 TAS2R9Q9NYW1 312 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 NUP210LQ5VU65 1888 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 AHCTF1Q8WYP5 2266 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 PEX12O00623 359 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 RFXANKO14593 260 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 CPSF4O95639 269 aaKnown RBP13.74□□□□□ -0.21
CD48-203ENST00000613788 C6orf47O95873 294 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 CD1EP15812 388 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 TRPC1P48995 793 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 KRT72Q14CN4 511 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 TLR1Q15399 786 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 SPRED3Q2MJR0 410 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 PRICKLE4Q2TBC4 344 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 COQ5Q5HYK3 327 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 KIRREL2Q6UWL6 708 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 PPP1R32Q7Z5V6 425 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 CLECL1Q8IZS7 167 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 MORN4Q8NDC4 146 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 OR4A15Q8NGL6 344 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 OR9A2Q8NGT5 310 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 DNAJB8Q8NHS0 232 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 ZNF675Q8TD23 568 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 PTPMT1Q8WUK0 201 aaPredicted RBP13.74□□□□□ -0.21
CD48-203ENST00000613788 C8orf44Q96CB5 159 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 ART5Q96L15 291 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 TMEM121BQ9BXQ6 578 aaPredicted RBP13.74□□□□□ -0.21
CD48-203ENST00000613788 ZNF700Q9H0M5 742 aa13.74□□□□□ -0.21
CD48-203ENST00000613788 A0A1W2PQ72 361 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms