RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 RIT1Q92963 219 aa15.42■□□□□ 0.06
CCDC28A-202ENST00000611852 C7orf26Q96N11 449 aa15.42■□□□□ 0.06
CCDC28A-202ENST00000611852 ZNF681Q96N22 645 aa15.42■□□□□ 0.06
CCDC28A-202ENST00000611852 TSSK3Q96PN8 268 aa15.42■□□□□ 0.06
CCDC28A-202ENST00000611852 LMF1Q96S06 567 aa15.42■□□□□ 0.06
CCDC28A-202ENST00000611852 OR8D2Q9GZM6 311 aa15.42■□□□□ 0.06
CCDC28A-202ENST00000611852 AKTIPQ9H8T0 292 aa15.42■□□□□ 0.06
CCDC28A-202ENST00000611852 MEAF6Q9HAF1 191 aa15.42■□□□□ 0.06
CCDC28A-202ENST00000611852 BAIAP2L1Q9UHR4 511 aa15.42■□□□□ 0.06
CCDC28A-202ENST00000611852 SMG1Q96Q15 3661 aaKnown RBP15.42■□□□□ 0.06
CCDC28A-202ENST00000611852 TRBV11-1A0A0K0K1C0 115 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 HRKO00198 91 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 HDAC3O15379 428 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 DYRK3O43781 588 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 PRB1P04280 392 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 CSNK2A2P19784 350 aaPredicted RBP15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 DUSP2Q05923 314 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 MFAP5Q13361 173 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 FCRLBQ6BAA4 426 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 HPS6Q86YV9 775 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 TICAM1Q8IUC6 712 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 WDR75Q8IWA0 830 aaKnown RBP15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 SLC5A8Q8N695 610 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 PIWIL2Q8TC59 973 aaKnown RBP15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 DOK4Q8TEW6 326 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 CKAP2Q8WWK9 683 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 EXOSC8Q96B26 276 aaKnown RBP15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 SENP5Q96HI0 755 aaPredicted RBP15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 FBXL20Q96IG2 436 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 NPAS2Q99743 824 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 C1orf50Q9BV19 199 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 DEFB126Q9BYW3 111 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 CXorf21Q9HAI6 301 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 SLCO1B3Q9NPD5 702 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 MIEF1Q9NQG6 463 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 SLC35C2Q9NQQ7 365 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 TAS2R7Q9NYW3 318 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 TEKT2Q9UIF3 430 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 ZNF780BQ9Y6R6 833 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 KALRNO60229 2985 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 CPAMD8Q8IZJ3 1885 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 COL6A6A6NMZ7 2263 aa15.41■□□□□ 0.06
CCDC28A-202ENST00000611852 SLCO1B7G3V0H7 640 aa15.4■□□□□ 0.06
CCDC28A-202ENST00000611852 IGKV3-11P04433 115 aa15.4■□□□□ 0.06
CCDC28A-202ENST00000611852 ATP1B1P05026 303 aa15.4■□□□□ 0.06
CCDC28A-202ENST00000611852 CD97P48960 835 aa15.4■□□□□ 0.06
CCDC28A-202ENST00000611852 EMX2Q04743 252 aa15.4■□□□□ 0.06
CCDC28A-202ENST00000611852 NFATC3Q12968 1075 aa15.4■□□□□ 0.06
CCDC28A-202ENST00000611852 ZNF267Q14586 743 aaPredicted RBP15.4■□□□□ 0.06
CCDC28A-202ENST00000611852 CEBPEQ15744 281 aa15.4■□□□□ 0.06
CCDC28A-202ENST00000611852 PRSS53Q2L4Q9 553 aa15.4■□□□□ 0.06
CCDC28A-202ENST00000611852 SMU1Q2TAY7 513 aa15.4■□□□□ 0.06
CCDC28A-202ENST00000611852 ACER2Q5QJU3 275 aa15.4■□□□□ 0.06
CCDC28A-202ENST00000611852 IL23RQ5VWK5 629 aa15.4■□□□□ 0.06
CCDC28A-202ENST00000611852 CRLF3Q8IUI8 442 aa15.4■□□□□ 0.06
CCDC28A-202ENST00000611852 LIX1Q8N485 282 aa15.4■□□□□ 0.06
CCDC28A-202ENST00000611852 CLHC1Q8NHS4 586 aa15.4■□□□□ 0.06
CCDC28A-202ENST00000611852 TM9SF4Q92544 642 aa15.4■□□□□ 0.06
CCDC28A-202ENST00000611852 GFM2Q969S9 779 aaKnown RBP15.4■□□□□ 0.06
CCDC28A-202ENST00000611852 ART5Q96L15 291 aa15.4■□□□□ 0.06
CCDC28A-202ENST00000611852 ZNF354BQ96LW1 612 aa15.4■□□□□ 0.06
CCDC28A-202ENST00000611852 MAGEB18Q96M61 343 aa15.4■□□□□ 0.06
CCDC28A-202ENST00000611852 EPS8L2Q9H6S3 715 aa15.4■□□□□ 0.06
CCDC28A-202ENST00000611852 STMN3Q9NZ72 180 aa15.4■□□□□ 0.06
CCDC28A-202ENST00000611852 BSNQ9UPA5 3926 aa15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 TRPC5OSA6NMA1 111 aa15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 SDHDO14521 159 aa15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 PRKNO60260 465 aaPredicted RBP15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 MAN1A2O60476 641 aa15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 DPM1O60762 260 aa15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 VPS4BO75351 444 aa15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 LRATO95237 230 aa15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 CT62P0C5K7 136 aa15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 PRPS2P11908 318 aa15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 ASMTP46597 345 aa15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 ERVK-8P63133 956 aa15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 MAD2L1Q13257 205 aaPredicted RBP15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 PTGR1Q14914 329 aa15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 MEP1AQ16819 746 aa15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 ABHD17BQ5VST6 288 aa15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 RPS19BP1Q86WX3 136 aaKnown RBP15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 PTRH1Q86Y79 214 aaKnown RBP15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 GALNT12Q8IXK2 581 aa15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 LRRC34Q8IZ02 419 aa15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 SAMD14Q8IZD0 417 aaPredicted RBP15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 LGI4Q8N135 537 aa15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 ARMC10Q8N2F6 343 aa15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 LRRC25Q8N386 305 aaPredicted RBP15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 RBMXL3Q8N7X1 1067 aaKnown RBP15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 ZNF764Q96H86 408 aaPredicted RBP15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 CNPPD1Q9BV87 410 aa15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 ASIC5Q9NY37 505 aa15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 COPS7AQ9UBW8 275 aa15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 ERVK-19Q9WJR5 959 aa15.39■□□□□ 0.05
CCDC28A-202ENST00000611852 ZNF195O14628 629 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 AKAP10O43572 662 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 C1QL1O75973 258 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 NT5EP21589 574 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 PRICKLE4Q2TBC4 344 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 HSDL2Q6YN16 418 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms