RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 PTX3P26022 381 aaPredicted RBP12.11□□□□□ -0.47
RPS28-204ENST00000602140 SERPINB3P29508 390 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 ARFIP1P53367 373 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 DLX5P56178 289 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 PHEXP78562 749 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 IRF9Q00978 393 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 CAV1Q03135 178 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 NAB1Q13506 487 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 SETDB1Q15047 1291 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 TRADDQ15628 312 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 CPSF6Q16630 551 aaKnown RBP eCLIP12.11□□□□□ -0.47
RPS28-204ENST00000602140 PFKFB4Q16877 469 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 FAM83EQ2M2I3 478 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 SPRED3Q2MJR0 410 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 MROH9Q5TGP6 573 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 MRM1Q6IN84 353 aaKnown RBP12.11□□□□□ -0.47
RPS28-204ENST00000602140 CYP20A1Q6UW02 462 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 RNF111Q6ZNA4 994 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 DND1Q8IYX4 353 aaKnown RBP12.11□□□□□ -0.47
RPS28-204ENST00000602140 LRRC25Q8N386 305 aaPredicted RBP12.11□□□□□ -0.47
RPS28-204ENST00000602140 FBXW8Q8N3Y1 598 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 OR10G3Q8NGC4 313 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 RHEBL1Q8TAI7 183 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 RIT1Q92963 219 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 MRRFQ96E11 262 aaKnown RBP12.11□□□□□ -0.47
RPS28-204ENST00000602140 JSRP1Q96MG2 331 aaPredicted RBP12.11□□□□□ -0.47
RPS28-204ENST00000602140 PELOQ9BRX2 385 aaKnown RBP12.11□□□□□ -0.47
RPS28-204ENST00000602140 ZNF717Q9BY31 904 aaPredicted RBP12.11□□□□□ -0.47
RPS28-204ENST00000602140 WWTR1Q9GZV5 400 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 SLC6A15Q9H2J7 730 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 SLC24A3Q9HC58 644 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 LYARQ9NX58 379 aaKnown RBP12.11□□□□□ -0.47
RPS28-204ENST00000602140 CNIH4Q9P003 139 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 TSC22D4Q9Y3Q8 395 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 ASB4Q9Y574 426 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 CHCHD2Q9Y6H1 151 aaPredicted RBP12.11□□□□□ -0.47
RPS28-204ENST00000602140 C2CD3Q4AC94 2353 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 A0A087X1B8 175 aa12.1□□□□□ -0.47
RPS28-204ENST00000602140 A0A0A6YYD5 115 aa12.1□□□□□ -0.47
RPS28-204ENST00000602140 FAM47E-STBD1D6RA91 191 aa12.1□□□□□ -0.47
RPS28-204ENST00000602140 H0YIV9 168 aa12.1□□□□□ -0.47
RPS28-204ENST00000602140 C2P06681 752 aa12.1□□□□□ -0.47
RPS28-204ENST00000602140 FAM58BPP0C7Q3 252 aa12.1□□□□□ -0.47
RPS28-204ENST00000602140 NR2F6P10588 404 aa12.1□□□□□ -0.47
RPS28-204ENST00000602140 CD1EP15812 388 aa12.1□□□□□ -0.47
RPS28-204ENST00000602140 BSGP35613 385 aa12.1□□□□□ -0.47
RPS28-204ENST00000602140 TRPC1P48995 793 aa12.1□□□□□ -0.47
RPS28-204ENST00000602140 ART1P52961 327 aa12.1□□□□□ -0.47
RPS28-204ENST00000602140 ALDH18A1P54886 795 aaKnown RBP12.1□□□□□ -0.47
RPS28-204ENST00000602140 SLC37A1P57057 533 aa12.1□□□□□ -0.47
RPS28-204ENST00000602140 EBPQ15125 230 aaKnown RBP12.1□□□□□ -0.47
RPS28-204ENST00000602140 SLC25A35Q3KQZ1 300 aa12.1□□□□□ -0.47
RPS28-204ENST00000602140 RIPPLY2Q5TAB7 128 aa12.1□□□□□ -0.47
RPS28-204ENST00000602140 ZDHHC24Q6UX98 284 aa12.1□□□□□ -0.47
RPS28-204ENST00000602140 WDR53Q7Z5U6 358 aaPredicted RBP12.1□□□□□ -0.47
RPS28-204ENST00000602140 MYRIPQ8NFW9 859 aa12.1□□□□□ -0.47
RPS28-204ENST00000602140 NEIL3Q8TAT5 605 aa12.1□□□□□ -0.47
RPS28-204ENST00000602140 NRGNQ92686 78 aa12.1□□□□□ -0.47
RPS28-204ENST00000602140 UCN3Q969E3 161 aa12.1□□□□□ -0.47
RPS28-204ENST00000602140 REPS1Q96D71 796 aa12.1□□□□□ -0.47
RPS28-204ENST00000602140 DOHHQ9BU89 302 aa12.1□□□□□ -0.47
RPS28-204ENST00000602140 RAB17Q9H0T7 212 aa12.1□□□□□ -0.47
RPS28-204ENST00000602140 DDX31Q9H8H2 851 aaKnown RBP12.1□□□□□ -0.47
RPS28-204ENST00000602140 IPPKQ9H8X2 491 aa12.1□□□□□ -0.47
RPS28-204ENST00000602140 ACKR4Q9NPB9 350 aa12.1□□□□□ -0.47
RPS28-204ENST00000602140 SNX15Q9NRS6 342 aa12.1□□□□□ -0.47
RPS28-204ENST00000602140 CNOT11Q9UKZ1 510 aaKnown RBP12.1□□□□□ -0.47
RPS28-204ENST00000602140 L3MBTL1Q9Y468 752 aa12.1□□□□□ -0.47
RPS28-204ENST00000602140 SETD2Q9BYW2 2564 aaPredicted RBP12.09□□□□□ -0.47
RPS28-204ENST00000602140 OR6C76A6NM76 312 aa12.09□□□□□ -0.47
RPS28-204ENST00000602140 UGDHO60701 494 aa12.09□□□□□ -0.47
RPS28-204ENST00000602140 AIFM1O95831 613 aa12.09□□□□□ -0.47
RPS28-204ENST00000602140 GBAP04062 536 aa12.09□□□□□ -0.47
RPS28-204ENST00000602140 CLPSP04118 112 aa12.09□□□□□ -0.47
RPS28-204ENST00000602140 SLC35E2P0CK97 266 aa12.09□□□□□ -0.47
RPS28-204ENST00000602140 DNAJA1P31689 397 aaKnown RBP12.09□□□□□ -0.47
RPS28-204ENST00000602140 NEK2P51955 445 aa12.09□□□□□ -0.47
RPS28-204ENST00000602140 CUL3Q13618 768 aa12.09□□□□□ -0.47
RPS28-204ENST00000602140 SNTB1Q13884 538 aaKnown RBP12.09□□□□□ -0.47
RPS28-204ENST00000602140 GTF2H2Q13888 395 aa12.09□□□□□ -0.47
RPS28-204ENST00000602140 ACAP2Q15057 778 aa12.09□□□□□ -0.47
RPS28-204ENST00000602140 PCBP2Q15366 365 aaKnown RBP eCLIP12.09□□□□□ -0.47
RPS28-204ENST00000602140 NTRK2Q16620 822 aa12.09□□□□□ -0.47
RPS28-204ENST00000602140 GTF2H2CQ6P1K8 395 aa12.09□□□□□ -0.47
RPS28-204ENST00000602140 ARSKQ6UWY0 536 aa12.09□□□□□ -0.47
RPS28-204ENST00000602140 TMEM64Q6YI46 380 aa12.09□□□□□ -0.47
RPS28-204ENST00000602140 GOLGA7Q7Z5G4 137 aa12.09□□□□□ -0.47
RPS28-204ENST00000602140 CCDC91Q7Z6B0 441 aa12.09□□□□□ -0.47
RPS28-204ENST00000602140 ULK2Q8IYT8 1036 aa12.09□□□□□ -0.47
RPS28-204ENST00000602140 TAGAPQ8N103 731 aa12.09□□□□□ -0.47
RPS28-204ENST00000602140 LIX1Q8N485 282 aa12.09□□□□□ -0.47
RPS28-204ENST00000602140 DIO2Q92813 273 aa12.09□□□□□ -0.47
RPS28-204ENST00000602140 WDR41Q9HAD4 459 aa12.09□□□□□ -0.47
RPS28-204ENST00000602140 RYDENQ9NUL5 291 aaKnown RBP12.09□□□□□ -0.47
RPS28-204ENST00000602140 QPCTLQ9NXS2 382 aa12.09□□□□□ -0.47
RPS28-204ENST00000602140 CPSF2Q9P2I0 782 aaKnown RBP12.09□□□□□ -0.47
RPS28-204ENST00000602140 B4GALT7Q9UBV7 327 aa12.09□□□□□ -0.47
RPS28-204ENST00000602140 RNF11Q9Y3C5 154 aa12.09□□□□□ -0.47
RPS28-204ENST00000602140 PCDHGB3Q9Y5G1 929 aa12.09□□□□□ -0.47
RPS28-204ENST00000602140 MED13LQ71F56 2210 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms