RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 FRKP42685 505 aaPredicted RBP19.56■□□□□ 0.72
UPF1-207ENST00000599848 FASLGP48023 281 aa19.56■□□□□ 0.72
UPF1-207ENST00000599848 DCAF7P61962 342 aa19.56■□□□□ 0.72
UPF1-207ENST00000599848 OGDHQ02218 1023 aa19.56■□□□□ 0.72
UPF1-207ENST00000599848 ACSBG2Q5FVE4 666 aa19.56■□□□□ 0.72
UPF1-207ENST00000599848 PEX11GQ96HA9 241 aa19.56■□□□□ 0.72
UPF1-207ENST00000599848 RDH12Q96NR8 316 aa19.56■□□□□ 0.72
UPF1-207ENST00000599848 MEAF6Q9HAF1 191 aa19.56■□□□□ 0.72
UPF1-207ENST00000599848 A0A1B0GVT2 93 aa19.56■□□□□ 0.72
UPF1-207ENST00000599848 LSM1O15116 133 aaKnown RBP19.56■□□□□ 0.72
UPF1-207ENST00000599848 SLC3A1Q07837 685 aa19.56■□□□□ 0.72
UPF1-207ENST00000599848 LPCAT4Q643R3 524 aa19.56■□□□□ 0.72
UPF1-207ENST00000599848 SLC27A4Q6P1M0 643 aa19.56■□□□□ 0.72
UPF1-207ENST00000599848 FRMD7Q6ZUT3 714 aa19.56■□□□□ 0.72
UPF1-207ENST00000599848 SLC22A31A6NKX4 558 aa19.56■□□□□ 0.72
UPF1-207ENST00000599848 G6PDP11413 515 aa19.56■□□□□ 0.72
UPF1-207ENST00000599848 GDF5P43026 501 aa19.56■□□□□ 0.72
UPF1-207ENST00000599848 KLHL15Q96M94 604 aa19.56■□□□□ 0.72
UPF1-207ENST00000599848 GPN2Q9H9Y4 310 aaPredicted RBP19.56■□□□□ 0.72
UPF1-207ENST00000599848 LOC102725191A0A1B0GVB3 256 aa19.56■□□□□ 0.72
UPF1-207ENST00000599848 GKN3PP0CG01 181 aa19.56■□□□□ 0.72
UPF1-207ENST00000599848 ARHGAP19Q14CB8 494 aa19.56■□□□□ 0.72
UPF1-207ENST00000599848 ZNF572Q7Z3I7 529 aaPredicted RBP19.56■□□□□ 0.72
UPF1-207ENST00000599848 MINDY2Q8NBR6 621 aa19.56■□□□□ 0.72
UPF1-207ENST00000599848 C16orf58Q96GQ5 468 aa19.56■□□□□ 0.72
UPF1-207ENST00000599848 PITX2Q99697 317 aa19.56■□□□□ 0.72
UPF1-207ENST00000599848 ZNF700Q9H0M5 742 aa19.56■□□□□ 0.72
UPF1-207ENST00000599848 SMCO3A2RU48 225 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 CENPBD1B2RD01 187 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 MT-ND1P03886 318 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 DAP3P51398 398 aaKnown RBP19.55■□□□□ 0.72
UPF1-207ENST00000599848 TUBA1BP68363 451 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 TUBA4AP68366 448 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 GNMTQ14749 295 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 PLGLAQ15195 96 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 ZNF678Q5SXM1 525 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 RBM20Q5T481 1227 aaKnown RBP19.55■□□□□ 0.72
UPF1-207ENST00000599848 TUBA1AQ71U36 451 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 RCBTB1Q8NDN9 531 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 OR10T2Q8NGX3 314 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 ACTR6Q9GZN1 396 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 ZNF576Q9H609 170 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 ANKMY1Q9P2S6 941 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 RICTORQ6R327 1708 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 NSG1A0A0A6YYJ2 146 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 A0A0G2JPF8 293 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 C2orf92A0A1B0GVN3 265 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 HNRNPCL3B7ZW38 293 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 E7ENX8 843 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 TULP2O00295 520 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 HNRNPCL4P0DMR1 293 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 IL32P24001 234 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 TUBA3EQ6PEY2 450 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 TRMT2BQ96GJ1 504 aaKnown RBP19.55■□□□□ 0.72
UPF1-207ENST00000599848 IL4I1Q96RQ9 567 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 HCAR1Q9BXC0 346 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 NUFIP1Q9UHK0 495 aaKnown RBP19.55■□□□□ 0.72
UPF1-207ENST00000599848 CHRM1P11229 460 aaPredicted RBP19.55■□□□□ 0.72
UPF1-207ENST00000599848 TAS2R38P59533 333 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 ZNF542PQ5EBM4 170 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 METTL25Q8N6Q8 603 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 TIMM29Q9BSF4 260 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 CXorf21Q9HAI6 301 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 SLCO3A1Q9UIG8 710 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 BORCS7-ASMTA0A0B4J1R7 106 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 PDLIM1O00151 329 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 TLX2O43763 284 aaPredicted RBP19.55■□□□□ 0.72
UPF1-207ENST00000599848 TAP2Q03519 686 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 METTL2BQ6P1Q9 378 aaKnown RBP19.55■□□□□ 0.72
UPF1-207ENST00000599848 SHQ1Q6PI26 577 aaKnown RBP19.55■□□□□ 0.72
UPF1-207ENST00000599848 ARSKQ6UWY0 536 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 TMPRSS9Q7Z410 1059 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 CARM1Q86X55 608 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 BOLLQ8N9W6 283 aaKnown RBP19.55■□□□□ 0.72
UPF1-207ENST00000599848 OR9A2Q8NGT5 310 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 MFSD8Q8NHS3 518 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 MTHFD2LQ9H903 347 aaPredicted RBP19.55■□□□□ 0.72
UPF1-207ENST00000599848 CLEC4EQ9ULY5 219 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 SLC6A14Q9UN76 642 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 TOR1BO14657 336 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 SLC2A2P11168 524 aaPredicted RBP19.55■□□□□ 0.72
UPF1-207ENST00000599848 CLCN2P51788 898 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 SPANXN4Q5MJ08 99 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 SLC18B1Q6NT16 456 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 DPPA4Q7L190 304 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 UBE2Q1Q7Z7E8 422 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 CDRT4Q8N9R6 151 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 ACTR10Q9NZ32 417 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 PISDQ9UG56 409 aa19.55■□□□□ 0.72
UPF1-207ENST00000599848 H7C417 338 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 SASH3O75995 380 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 ZFAND5O76080 213 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 VAMP1P23763 118 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 MAGEA8P43361 318 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 ASTE1Q2TB18 679 aaPredicted RBP19.54■□□□□ 0.72
UPF1-207ENST00000599848 RUNDC3AQ59EK9 446 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 MYRFLQ96LU7 910 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 ITPAQ9BY32 194 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 LOC105369274A0A096LPK9 316 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 GLOD5A6NK44 160 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms