RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 ZNF354BQ96LW1 612 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 AIF1LQ9BQI0 150 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 TUBB6Q9BUF5 446 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 RHBGQ9H310 441 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 TP63Q9H3D4 680 aaPredicted RBP12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 SYNPO2LQ9H987 977 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 KCNK13Q9HB14 408 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 CRIM1Q9NZV1 1036 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 TIMM22Q9Y584 194 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 PCDHGA11Q9Y5H2 935 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 DNAJC15Q9Y5T4 150 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 TLN2Q9Y4G6 2542 aa12.96□□□□□ -0.34
SHKBP1-218ENST00000598907 FITM1A5D6W6 292 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 GABRR3A8MPY1 467 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 TMEM233B4DJY2 109 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 H7C1Q1 480 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 MANBAO00462 879 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 ZNF195O14628 629 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 CTSVO60911 334 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 SP1P08047 785 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 EZRP15311 586 aaKnown RBP12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 ALOX15P16050 662 aaPredicted RBP12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 KIR2DL3P43628 341 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 SCTRP47872 440 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 NKX6-1P78426 367 aaPredicted RBP12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 HIST2H2ACQ16777 129 aaPredicted RBP12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 C10orf62Q5T681 223 aaPredicted RBP12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 CLEC6AQ6EIG7 209 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 HIST2H2AA3Q6FI13 130 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 FRMPD2BQ6IN97 320 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 MED27Q6P2C8 311 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 TMIGD1Q6UXZ0 262 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 RNF44Q7L0R7 432 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 VN1R5Q7Z5H4 357 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 KRT78Q8N1N4 520 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 ANKRD53Q8N9V6 530 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 MFSD9Q8NBP5 474 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 OR5M3Q8NGP4 307 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 UBE2E3Q969T4 207 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 THAP11Q96EK4 314 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 COX4I2Q96KJ9 171 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 IMMP1LQ96LU5 166 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 OR2A5Q96R48 311 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 TUBB1Q9H4B7 451 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 NEUROD4Q9HD90 331 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 ENAMQ9NRM1 1142 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 FGFR1OP2Q9NVK5 253 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 PSD3Q9NYI0 1048 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 SNX6Q9UNH7 406 aa12.95□□□□□ -0.34
SHKBP1-218ENST00000598907 IGLV3-12A0A075B6K2 115 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 LOC102723996A0A087X1L8 192 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 A0A0J9YVX5 310 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 FEZF1A0PJY2 475 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 GMNCA6NCL1 334 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 A6NNC1 897 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 SLCO1B7G3V0H7 640 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 VIMP08670 466 aaKnown RBP12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 GSTM2P28161 218 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 SERPINB3P29508 390 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 HMOX2P30519 316 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 GRK3P35626 688 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 AHRP35869 848 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 ARL1P40616 181 aaPredicted RBP12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 BCL6P41182 706 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 EFNA3P52797 238 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 SEC24CP53992 1094 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 RPS15AP62244 130 aaKnown RBP12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 TCHHL1Q5QJ38 904 aaPredicted RBP12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 FRG2Q64ET8 278 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 SLC25A25Q6KCM7 469 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 CGB2Q6NT52 195 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 LANCL3Q6ZV70 420 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 ADCK2Q7Z695 626 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 PLD3Q8IV08 490 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 TM4SF19Q96DZ7 209 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 FAR2Q96K12 515 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 C10orf90Q96M02 699 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 ZNF285Q96NJ3 590 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 FRG2BQ96QU4 278 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 C14orf105Q9NVL8 296 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 VTI1BQ9UEU0 232 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 ADGRE2Q9UHX3 823 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 MKL2Q9ULH7 1088 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 CCL27Q9Y4X3 112 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 HIVEP2P31629 2446 aa12.94□□□□□ -0.34
SHKBP1-218ENST00000598907 LOC105369274A0A096LPK9 316 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 LOC102723532A0A0G2JNH3 316 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 FOXE1O00358 373 aaPredicted RBP12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 HDAC3O15379 428 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 OR1F1O43749 312 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 ULK1O75385 1050 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 SLC25A12O75746 678 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 NEURL1O76050 574 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 PDE9AO76083 593 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 TBX6O95947 436 aaPredicted RBP12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 PDYNP01213 254 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 KRT6AP02538 564 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 KRT6BP04259 564 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 C8orf89P0DMQ9 161 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 DRD4P21917 467 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms