RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 EXOSC8Q96B26 276 aaKnown RBP13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 VMP1Q96GC9 406 aa13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 RBM18Q96H35 190 aaKnown RBP13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 METTL2AQ96IZ6 378 aaKnown RBP13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 CXorf21Q9HAI6 301 aa13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 MYNNQ9NPC7 610 aa13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 THAP1Q9NVV9 213 aa13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 CFAP46Q8IYW2 2715 aa13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 OR10H2O60403 315 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 LRATO95237 230 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 ALPPP05187 535 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 DDCP20711 480 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 SSTR4P31391 388 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 CLCN2P51788 898 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 MLF1P58340 268 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 ERVK-8P63133 956 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 PPP2R2AP63151 447 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 PLIN5Q00G26 463 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 KLRB1Q12918 225 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 DUSP8Q13202 625 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 BIKQ13323 160 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 MPEG1Q2M385 716 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 ZNF385BQ569K4 471 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 IRAK1BP1Q5VVH5 260 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 ANKRD26P1Q6NSI1 321 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 Q6ZS92 163 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 MAVSQ7Z434 540 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 ZNF227Q86WZ6 799 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 TICAM1Q8IUC6 712 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 CCDC116Q8IYX3 515 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 TEX19Q8NA77 164 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 ADCY4Q8NFM4 1077 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 SUN3Q8TAQ9 357 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 HAS2Q92819 552 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 DAZLQ92904 295 aaKnown RBP13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 RIT1Q92963 219 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 KLHL29Q96CT2 875 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 C19orf60Q96EN9 201 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 ZNF354BQ96LW1 612 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 TSSK3Q96PN8 268 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 C1orf50Q9BV19 199 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 FAIM2Q9BWQ8 316 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 DEFB126Q9BYW3 111 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 NUF2Q9BZD4 464 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 AKTIPQ9H8T0 292 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 SLAMF7Q9NQ25 335 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 ANKRD10Q9NXR5 420 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 MARCOQ9UEW3 520 aaPredicted RBP13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 UTS2RQ9UKP6 389 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 ERVK-19Q9WJR5 959 aa13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 TLN1Q9Y490 2541 aaKnown RBP13.21□□□□□ -0.29
SHKBP1-217ENST00000598558 EIF4E1BA6NMX2 242 aaKnown RBP13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 SDHDO14521 159 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 ZNF195O14628 629 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 KLF11O14901 512 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 AKAP10O43572 662 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 DPM1O60762 260 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 NME6O75414 186 aaPredicted RBP13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 KITP10721 976 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 GALNSP34059 522 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 CD96P40200 585 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 HEPACAMQ14CZ8 416 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 SPRED3Q2MJR0 410 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 PRICKLE4Q2TBC4 344 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 PRR30Q53SZ7 412 aaPredicted RBP13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 ABHD17BQ5VST6 288 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 IL23RQ5VWK5 629 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 ATG16L1Q676U5 607 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 WDR75Q8IWA0 830 aaKnown RBP13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 C9orf40Q8IXQ3 194 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 ZADH2Q8N4Q0 377 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 GOLGA6L1Q8N7Z2 621 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 ZNF615Q8N8J6 731 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 RAB3IL1Q8TBN0 382 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 TUBGCP3Q96CW5 907 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 FBXL20Q96IG2 436 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 PPP3R2Q96LZ3 170 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 SIGLEC12Q96PQ1 595 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 CCT7Q99832 543 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 CNPPD1Q9BV87 410 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 ANKRA2Q9H9E1 313 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 SLCO1B3Q9NPD5 702 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 SLC35C2Q9NQQ7 365 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 MAT2BQ9NZL9 334 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 ZNF639Q9UID6 485 aa13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 G3BP2Q9UN86 482 aaKnown RBP13.2□□□□□ -0.3
SHKBP1-217ENST00000598558 SYNDIG1LA6NDD5 238 aa13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 KLHL41O60662 606 aa13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 ZFAND5O76080 213 aa13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 SORBS2O94875 1100 aaKnown RBP13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 ATP1B1P05026 303 aa13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 CSNK2A2P19784 350 aaPredicted RBP13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 NT5EP21589 574 aa13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 SLC37A1P57057 533 aa13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 AP2B1P63010 937 aa13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 RNF4P78317 190 aa13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 FUT7Q11130 342 aa13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 MAP4K2Q12851 820 aa13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 TUBA3CQ13748 450 aa13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 CEBPEQ15744 281 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms