RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 PCDHGA3Q9Y5H0 932 aa11.33□□□□□ -0.6
SHKBP1-213ENST00000597325 PCDHA9Q9Y5H5 950 aa11.33□□□□□ -0.6
SHKBP1-213ENST00000597325 B3GALT1Q9Y5Z6 326 aa11.33□□□□□ -0.6
SHKBP1-213ENST00000597325 A0A1W2PR48 441 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 C9J4A7 227 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 C9JVG2 144 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 ANGPT2O15123 496 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 CFLARO15519 480 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 PROM1O43490 865 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 IL6P05231 212 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 SNRPB2P08579 225 aaKnown RBP11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 PRDX6P30041 224 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 PPP2R1BP30154 601 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 NTSP30990 170 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 KIR3DL1P43629 444 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 XCR1P46094 333 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 MAT1AQ00266 395 aaKnown RBP11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 MC1RQ01726 317 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 SRSF11Q05519 484 aaKnown RBP11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 CYLC2Q14093 348 aaPredicted RBP11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 RCAN2Q14206 197 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 KRT72Q14CN4 511 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 MMEL1Q495T6 779 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 NKAIN1Q4KMZ8 207 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 TIGD2Q4W5G0 525 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 SPANXN4Q5MJ08 99 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 C18orf63Q68DL7 685 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 ASB18Q6ZVZ8 466 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 RIMKLAQ8IXN7 391 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 OR7A2PQ8NGA2 310 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 OR51Q1Q8NH59 317 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 EXOSC8Q96B26 276 aaKnown RBP11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 TBC1D20Q96BZ9 403 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 KLHL29Q96CT2 875 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 SPDL1Q96EA4 605 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 PEX11GQ96HA9 241 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 TEX37Q96LM6 180 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 LRFN5Q96NI6 719 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 GBP5Q96PP8 586 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 OR1F2PQ96R84 312 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 CSF3RQ99062 836 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 RPF2Q9H7B2 306 aaKnown RBP11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 RMND5AQ9H871 391 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 MKKSQ9NPJ1 570 aaPredicted RBP11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 PRDM9Q9NQV7 894 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 ZNF282Q9UDV7 671 aaPredicted RBP11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 GPN3Q9UHW5 284 aaPredicted RBP11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 ATP6V1HQ9UI12 483 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 PSME2Q9UL46 239 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 ENTPD4Q9Y227 616 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 KCNMB2Q9Y691 235 aa11.32□□□□□ -0.6
SHKBP1-213ENST00000597325 GLOD5A6NK44 160 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 BBIP1A8MTZ0 92 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 CAPN14A8MX76 684 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 MEN1O00255 615 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 CLDN4O14493 209 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 PDPK1O15530 556 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 PRKRAO75569 313 aaKnown RBP11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 STK17BO94768 372 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 SORBS2O94875 1100 aaKnown RBP11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 PDGFAP04085 211 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 PGRP06401 933 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 FHP07954 510 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 COX4I1P13073 169 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 IL10P22301 178 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 IL12AP29459 219 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 RORAP35398 523 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 OCA2Q04671 838 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 STX5Q13190 355 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 PDE7AQ13946 482 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 UGT8Q16880 541 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 SYT16Q17RD7 645 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 CRTC2Q53ET0 693 aaPredicted RBP11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 MFSD4BQ5TF39 518 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 ANXA8L1Q5VT79 327 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 ANKRD26P1Q6NSI1 321 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 SLC48A1Q6P1K1 146 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 BLOC1S3Q6QNY0 202 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 CCDC121Q6ZUS5 278 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 CAMKMTQ7Z624 323 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 TREML1Q86YW5 311 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 SAMD14Q8IZD0 417 aaPredicted RBP11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 MMP21Q8N119 569 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 NATD1Q8N6N6 113 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 POU5F2Q8N7G0 328 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 VPS37AQ8NEZ2 397 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 RP9Q8TA86 221 aaKnown RBP11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 PRR7Q8TB68 274 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 TSPEARQ8WU66 669 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 NANOS1Q8WY41 292 aaKnown RBP11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 TANKQ92844 425 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 MR1Q95460 341 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 FKBP10Q96AY3 582 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 ZNF764Q96H86 408 aaPredicted RBP11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 OR52E6Q96RD3 313 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 TUBB6Q9BUF5 446 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 DUSP26Q9BV47 211 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 BHLHE41Q9C0J9 482 aaPredicted RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms