RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 REEP4Q9H6H4 257 aa9.86□□□□□ -0.83
LIG1-210ENST00000596332 ZNF552Q9H707 407 aaPredicted RBP9.86□□□□□ -0.83
LIG1-210ENST00000596332 CXorf21Q9HAI6 301 aa9.86□□□□□ -0.83
LIG1-210ENST00000596332 ZBTB20Q9HC78 741 aaPredicted RBP9.86□□□□□ -0.83
LIG1-210ENST00000596332 SLC35C2Q9NQQ7 365 aa9.86□□□□□ -0.83
LIG1-210ENST00000596332 PNO1Q9NRX1 252 aaKnown RBP9.86□□□□□ -0.83
LIG1-210ENST00000596332 UTS2RQ9UKP6 389 aa9.86□□□□□ -0.83
LIG1-210ENST00000596332 MRPS33Q9Y291 106 aaKnown RBP9.86□□□□□ -0.83
LIG1-210ENST00000596332 SCAMP2O15127 329 aaKnown RBP9.85□□□□□ -0.83
LIG1-210ENST00000596332 ZNF354AO60765 605 aaPredicted RBP9.85□□□□□ -0.83
LIG1-210ENST00000596332 DIAPH2O60879 1101 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 GUCY1B2O75343 617 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 MYO1DO94832 1006 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 C1QCP02747 245 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 ITGB2P05107 769 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 SERPINA7P05543 415 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 PORP16435 677 aaPredicted RBP9.85□□□□□ -0.83
LIG1-210ENST00000596332 DRD4P21917 467 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 GPX3P22352 226 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 LSP1P33241 339 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 SOX11P35716 441 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 ALDH9A1P49189 494 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 FUT7Q11130 342 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 MAP4K2Q12851 820 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 BIKQ13323 160 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 SERTAD2Q14140 314 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 HEPACAMQ14CZ8 416 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 LTB4RQ15722 352 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 TRMT12Q53H54 448 aaKnown RBP9.85□□□□□ -0.83
LIG1-210ENST00000596332 ZNF628Q5EBL2 1059 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 CCDC116Q8IYX3 515 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 TMEM132CQ8N3T6 1108 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 PIP4P2Q8N4L2 257 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 ZNF615Q8N8J6 731 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 B3GNT7Q8NFL0 401 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 M1APQ8TC57 530 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 METTL21AQ8WXB1 218 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 CIDECQ96AQ7 238 aaPredicted RBP9.85□□□□□ -0.83
LIG1-210ENST00000596332 EXOSC8Q96B26 276 aaKnown RBP9.85□□□□□ -0.83
LIG1-210ENST00000596332 MTERF3Q96E29 417 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 SENP5Q96HI0 755 aaPredicted RBP9.85□□□□□ -0.83
LIG1-210ENST00000596332 AMDHD1Q96NU7 426 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 CATSPER2Q96P56 530 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 FAIM2Q9BWQ8 316 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 GLIPR2Q9H4G4 154 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 ANKRA2Q9H9E1 313 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 NPHS2Q9NP85 383 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 MMP25Q9NPA2 562 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 ADAP2Q9NPF8 381 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 SDR39U1Q9NRG7 319 aaPredicted RBP9.85□□□□□ -0.83
LIG1-210ENST00000596332 MAT2BQ9NZL9 334 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 NOP53Q9NZM5 478 aaKnown RBP9.85□□□□□ -0.83
LIG1-210ENST00000596332 DCTN4Q9UJW0 460 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 MAN2B2Q9Y2E5 1009 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 SPACA6W5XKT8 324 aa9.85□□□□□ -0.83
LIG1-210ENST00000596332 NSG1A0A0A6YYJ2 146 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 C17orf105B2RV13 164 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 C9JVG2 144 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 NME6O75414 186 aaPredicted RBP9.84□□□□□ -0.83
LIG1-210ENST00000596332 ERAL1O75616 437 aaKnown RBP9.84□□□□□ -0.83
LIG1-210ENST00000596332 CBX7O95931 251 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 EFNA1P20827 205 aaPredicted RBP9.84□□□□□ -0.83
LIG1-210ENST00000596332 PIK3R1P27986 724 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 ASMTP46597 345 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 CCL11P51671 97 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 SLC37A1P57057 533 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 STX4Q12846 297 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 B3GNTL1Q67FW5 361 aaPredicted RBP9.84□□□□□ -0.83
LIG1-210ENST00000596332 IGFL2Q6UWQ7 119 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 ZNF551Q7Z340 670 aaPredicted RBP9.84□□□□□ -0.83
LIG1-210ENST00000596332 GALNT16Q8N428 558 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 MORN4Q8NDC4 146 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 ADCY4Q8NFM4 1077 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 FDCSPQ8NFU4 85 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 OR9I1Q8NGQ6 314 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 OR1N1Q8NGS0 311 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 SLC2A12Q8TD20 617 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 ZNF675Q8TD23 568 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 C10orf82Q8WW14 230 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 APOBEC4Q8WW27 367 aaKnown RBP9.84□□□□□ -0.83
LIG1-210ENST00000596332 NCLNQ969V3 563 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 TESCQ96BS2 214 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 KLHL29Q96CT2 875 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 LPAR4Q99677 370 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 CLMPQ9H6B4 373 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 WDR41Q9HAD4 459 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 PRM3Q9NNZ6 103 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 ATP13A2Q9NQ11 1180 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 TCF7L2Q9NQB0 619 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 PFDN4Q9NQP4 134 aa9.84□□□□□ -0.83
LIG1-210ENST00000596332 SIRT3Q9NTG7 399 aaPredicted RBP9.84□□□□□ -0.83
LIG1-210ENST00000596332 C19orf25Q9UFG5 118 aaPredicted RBP9.84□□□□□ -0.83
LIG1-210ENST00000596332 EIF3LQ9Y262 564 aaKnown RBP9.84□□□□□ -0.83
LIG1-210ENST00000596332 COPG1Q9Y678 874 aaKnown RBP9.84□□□□□ -0.83
LIG1-210ENST00000596332 BSNQ9UPA5 3926 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 DOCK10Q96BY6 2186 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 ASPDHA6ND91 283 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 E9PBE3 544 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 PEX12O00623 359 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 UBDO15205 165 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms