RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 PPWD1Q96BP3 646 aaKnown RBP14.01□□□□□ -0.17
TRIM28-205ENST00000595028 SENP5Q96HI0 755 aaPredicted RBP14.01□□□□□ -0.17
TRIM28-205ENST00000595028 LIN28AQ9H9Z2 209 aaKnown RBP14.01□□□□□ -0.17
TRIM28-205ENST00000595028 NMRK1Q9NWW6 199 aa14.01□□□□□ -0.17
TRIM28-205ENST00000595028 GRID1Q9ULK0 1009 aa14.01□□□□□ -0.17
TRIM28-205ENST00000595028 KLF13Q9Y2Y9 288 aaPredicted RBP14.01□□□□□ -0.17
TRIM28-205ENST00000595028 A0A1W2PS29 197 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 A8MVJ9 347 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 OR6B1O95007 311 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 SLC35E2P0CK97 266 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 KRT4P19013 534 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 GALNSP34059 522 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 SOX3P41225 446 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 NAA20P61599 178 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 ERVK-8P63133 956 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 ALDH6A1Q02252 535 aaKnown RBP14□□□□□ -0.17
TRIM28-205ENST00000595028 SLC18A2Q05940 514 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 WDR93Q6P2C0 686 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 EMBQ6PCB8 327 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 FRMD7Q6ZUT3 714 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 SIAH3Q8IW03 269 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 C1orf52Q8N6N3 182 aaKnown RBP14□□□□□ -0.17
TRIM28-205ENST00000595028 CCNYL1Q8N7R7 359 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 POGLUT1Q8NBL1 392 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 NUBPLQ8TB37 319 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 UCN3Q969E3 161 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 GPR137Q96N19 417 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 KCNA7Q96RP8 456 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 CNPPD1Q9BV87 410 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 ACPTQ9BZG2 426 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 TSPAN10Q9H1Z9 355 aaPredicted RBP14□□□□□ -0.17
TRIM28-205ENST00000595028 TIMMDC1Q9NPL8 285 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14□□□□□ -0.17
TRIM28-205ENST00000595028 HPF1Q9NWY4 346 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 VPS29Q9UBQ0 182 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 NOL12Q9UGY1 213 aaKnown RBP eCLIP14□□□□□ -0.17
TRIM28-205ENST00000595028 ERVK-11Q9UQG0 969 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 ERVK-19Q9WJR5 959 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 V9GYY5 206 aaPredicted RBP14□□□□□ -0.17
TRIM28-205ENST00000595028 CROCCQ5TZA2 2017 aa14□□□□□ -0.17
TRIM28-205ENST00000595028 MYO7BQ6PIF6 2116 aa13.99□□□□□ -0.17
TRIM28-205ENST00000595028 C1orf226A1L170 272 aa13.99□□□□□ -0.17
TRIM28-205ENST00000595028 CCDC151A5D8V7 595 aa13.99□□□□□ -0.17
TRIM28-205ENST00000595028 PGRMC2O15173 223 aa13.99□□□□□ -0.17
TRIM28-205ENST00000595028 LRRTM2O43300 516 aa13.99□□□□□ -0.17
TRIM28-205ENST00000595028 GUCY1B2O75343 617 aa13.99□□□□□ -0.17
TRIM28-205ENST00000595028 ULK1O75385 1050 aa13.99□□□□□ -0.17
TRIM28-205ENST00000595028 CHN1P15882 459 aa13.99□□□□□ -0.17
TRIM28-205ENST00000595028 PIK3R1P27986 724 aa13.99□□□□□ -0.17
TRIM28-205ENST00000595028 MEOX1P50221 254 aa13.99□□□□□ -0.17
TRIM28-205ENST00000595028 DNAJB13P59910 316 aa13.99□□□□□ -0.17
TRIM28-205ENST00000595028 RNFT1Q5M7Z0 435 aa13.99□□□□□ -0.17
TRIM28-205ENST00000595028 MDGA2Q7Z553 956 aa13.99□□□□□ -0.17
TRIM28-205ENST00000595028 GBP7Q8N8V2 638 aaPredicted RBP13.99□□□□□ -0.17
TRIM28-205ENST00000595028 CCDC63Q8NA47 563 aa13.99□□□□□ -0.17
TRIM28-205ENST00000595028 PSD4Q8NDX1 1056 aa13.99□□□□□ -0.17
TRIM28-205ENST00000595028 DOK4Q8TEW6 326 aa13.99□□□□□ -0.17
TRIM28-205ENST00000595028 RIT1Q92963 219 aa13.99□□□□□ -0.17
TRIM28-205ENST00000595028 CAVIN3Q969G5 261 aa13.99□□□□□ -0.17
TRIM28-205ENST00000595028 APOPT1Q96IL0 206 aa13.99□□□□□ -0.17
TRIM28-205ENST00000595028 C12orf65Q9H3J6 166 aaKnown RBP13.99□□□□□ -0.17
TRIM28-205ENST00000595028 MID1IP1Q9NPA3 183 aa13.99□□□□□ -0.17
TRIM28-205ENST00000595028 MKS1Q9NXB0 559 aa13.99□□□□□ -0.17
TRIM28-205ENST00000595028 LGALS13Q9UHV8 139 aa13.99□□□□□ -0.17
TRIM28-205ENST00000595028 MCM8Q9UJA3 840 aa13.99□□□□□ -0.17
TRIM28-205ENST00000595028 MID2Q9UJV3 735 aa13.99□□□□□ -0.17
TRIM28-205ENST00000595028 PCDHA9Q9Y5H5 950 aa13.99□□□□□ -0.17
TRIM28-205ENST00000595028 EML6Q6ZMW3 1958 aa13.98□□□□□ -0.17
TRIM28-205ENST00000595028 TLDC2A0PJX2 215 aa13.98□□□□□ -0.17
TRIM28-205ENST00000595028 NPIPA5E9PKD4 350 aa13.98□□□□□ -0.17
TRIM28-205ENST00000595028 UBFD1O14562 309 aaKnown RBP13.98□□□□□ -0.17
TRIM28-205ENST00000595028 PEX1O43933 1283 aa13.98□□□□□ -0.17
TRIM28-205ENST00000595028 ZNF354AO60765 605 aaPredicted RBP13.98□□□□□ -0.17
TRIM28-205ENST00000595028 WISP2O76076 250 aa13.98□□□□□ -0.17
TRIM28-205ENST00000595028 CLPSP04118 112 aa13.98□□□□□ -0.17
TRIM28-205ENST00000595028 CPMP14384 443 aa13.98□□□□□ -0.17
TRIM28-205ENST00000595028 NAGLUP54802 743 aa13.98□□□□□ -0.17
TRIM28-205ENST00000595028 PER3P56645 1201 aa13.98□□□□□ -0.17
TRIM28-205ENST00000595028 TRA2BP62995 288 aaKnown RBP13.98□□□□□ -0.17
TRIM28-205ENST00000595028 RBPJQ06330 500 aa13.98□□□□□ -0.17
TRIM28-205ENST00000595028 GTF3C1Q12789 2109 aa13.98□□□□□ -0.17
TRIM28-205ENST00000595028 ASPHQ12797 758 aa13.98□□□□□ -0.17
TRIM28-205ENST00000595028 ZNF267Q14586 743 aaPredicted RBP13.98□□□□□ -0.17
TRIM28-205ENST00000595028 EBPQ15125 230 aaKnown RBP13.98□□□□□ -0.17
TRIM28-205ENST00000595028 MPEG1Q2M385 716 aa13.98□□□□□ -0.17
TRIM28-205ENST00000595028 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.98□□□□□ -0.17
TRIM28-205ENST00000595028 SLC48A1Q6P1K1 146 aa13.98□□□□□ -0.17
TRIM28-205ENST00000595028 IL20RBQ6UXL0 311 aa13.98□□□□□ -0.17
TRIM28-205ENST00000595028 RNF111Q6ZNA4 994 aa13.98□□□□□ -0.17
TRIM28-205ENST00000595028 TRABD2AQ86V40 505 aa13.98□□□□□ -0.17
TRIM28-205ENST00000595028 SULF2Q8IWU5 870 aa13.98□□□□□ -0.17
TRIM28-205ENST00000595028 GALNT12Q8IXK2 581 aa13.98□□□□□ -0.17
TRIM28-205ENST00000595028 MMP21Q8N119 569 aa13.98□□□□□ -0.17
TRIM28-205ENST00000595028 OR4K14Q8NGD5 310 aa13.98□□□□□ -0.17
TRIM28-205ENST00000595028 TM4SF18Q96CE8 201 aa13.98□□□□□ -0.17
TRIM28-205ENST00000595028 GAL3ST4Q96RP7 486 aa13.98□□□□□ -0.17
TRIM28-205ENST00000595028 CXorf21Q9HAI6 301 aa13.98□□□□□ -0.17
TRIM28-205ENST00000595028 OXSMQ9NWU1 459 aa13.98□□□□□ -0.17
TRIM28-205ENST00000595028 NPIPA1Q9UND3 350 aa13.98□□□□□ -0.17
TRIM28-205ENST00000595028 TIMM22Q9Y584 194 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms