RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 GLYATQ6IB77 296 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 DENND5AQ6IQ26 1287 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 TIGD7Q6NT04 549 aaPredicted RBP3.95□□□□□ -1.78
LIG3-211ENST00000588713 ZNF549Q6P9A3 640 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 SHQ1Q6PI26 577 aaKnown RBP3.95□□□□□ -1.78
LIG3-211ENST00000588713 SPESP1Q6UW49 350 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 CCBE1Q6UXH8 406 aaPredicted RBP3.95□□□□□ -1.78
LIG3-211ENST00000588713 RNF165Q6ZSG1 346 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 ZNF767PQ75MW2 155 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 DPH6Q7L8W6 267 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 HDDC2Q7Z4H3 204 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 VN1R5Q7Z5H4 357 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 KIAA0907Q7Z7F0 614 aaPredicted RBP3.95□□□□□ -1.78
LIG3-211ENST00000588713 ABI3BPQ7Z7G0 1075 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 ACOT1Q86TX2 421 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 FAM35AQ86V20 835 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 ADIPOR2Q86V24 386 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 PIM3Q86V86 326 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 SNX29P2Q8IUI4 249 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 CCDC103Q8IW40 242 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 DENND6AQ8IWF6 608 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 GALNT12Q8IXK2 581 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 UBQLNLQ8IYU4 475 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 PHACTR4Q8IZ21 702 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 DEFB106AQ8N104 65 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 CRYBG2Q8N1P7 616 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 PYROXD2Q8N2H3 581 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 METTL4Q8N3J2 472 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 ATPAF2Q8N5M1 289 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 ESX1Q8N693 406 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 NPWQ8N729 165 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 PTGR2Q8N8N7 351 aaPredicted RBP3.95□□□□□ -1.78
LIG3-211ENST00000588713 AGBL5Q8NDL9 886 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 IL17RDQ8NFM7 739 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 SCAMP5Q8TAC9 235 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 WFIKKN2Q8TEU8 576 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 CLEC4CQ8WTT0 213 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 KCTD13Q8WZ19 329 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 SGCDQ92629 289 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 FATE1Q969F0 183 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 RELTQ969Z4 430 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 TUBGCP3Q96CW5 907 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 PDLIM5Q96HC4 596 aaKnown RBP3.95□□□□□ -1.78
LIG3-211ENST00000588713 RNF170Q96K19 258 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 C3orf30Q96M34 536 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 CDK5RAP1Q96SZ6 601 aaKnown RBP3.95□□□□□ -1.78
LIG3-211ENST00000588713 SEPHS2Q99611 448 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 ZNF559Q9BR84 538 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 MRPL45Q9BRJ2 306 aaKnown RBP3.95□□□□□ -1.78
LIG3-211ENST00000588713 NUDT22Q9BRQ3 303 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 FICDQ9BVA6 458 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 GON7Q9BXV9 100 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 CCDC90BQ9GZT6 254 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 TFB2MQ9H5Q4 396 aaKnown RBP3.95□□□□□ -1.78
LIG3-211ENST00000588713 GLOD4Q9HC38 313 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 MID1IP1Q9NPA3 183 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 ZFP64Q9NPA5 681 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 POLE4Q9NR33 117 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 DDX28Q9NUL7 540 aaKnown RBP3.95□□□□□ -1.78
LIG3-211ENST00000588713 INTS7Q9NVH2 962 aaKnown RBP3.95□□□□□ -1.78
LIG3-211ENST00000588713 DPP3Q9NY33 737 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 TRPS1Q9UHF7 1281 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 TMEFF2Q9UIK5 374 aaPredicted RBP3.95□□□□□ -1.78
LIG3-211ENST00000588713 NUDT5Q9UKK9 219 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 NUP50Q9UKX7 468 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 CDH9Q9ULB4 789 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 GPR34Q9UPC5 381 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 CFL2Q9Y281 166 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 LYVE1Q9Y5Y7 322 aa3.95□□□□□ -1.78
LIG3-211ENST00000588713 A0A075B6Q4 140 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 IGHV5-10-1A0A0J9YXX1 117 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 KRTAP9-6A0A140TA67 174 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 ATP6AP2A0A1C7CYW4 349 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 PABPN1LA6NDY0 278 aaKnown RBP3.94□□□□□ -1.78
LIG3-211ENST00000588713 POM121BA6NF01 834 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 A8MU76 341 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 ADARB2-AS1A8MUL3 147 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 E9PQ18 207 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 H7C1Q1 480 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 M0QYT0 321 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 PRMT5O14744 637 aaPredicted RBP3.94□□□□□ -1.78
LIG3-211ENST00000588713 PROM1O43490 865 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 AIREO43918 545 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 ATP6AP2O75787 350 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 UGT2B17O75795 530 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 LRIG2O94898 1065 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 CLDN14O95500 239 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 MT-ND1P03886 318 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 UROSP10746 265 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 UBL4AP11441 157 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 IL7P13232 177 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 LCP1P13796 627 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 NCF1P14598 390 aaPredicted RBP3.94□□□□□ -1.78
LIG3-211ENST00000588713 CD1DP15813 335 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 SPNP16150 400 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 PCSK2P16519 638 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 CD36P16671 472 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 ZNF37AP17032 561 aaPredicted RBP3.94□□□□□ -1.78
LIG3-211ENST00000588713 CYP2A7P20853 494 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 CCNCP24863 283 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms