RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 NETO1Q8TDF5 533 aa23.56■■□□□ 1.36
SHMT1-207ENST00000580002 ZFP90Q8TF47 636 aa23.56■■□□□ 1.36
SHMT1-207ENST00000580002 DEPDC7Q96QD5 511 aa23.56■■□□□ 1.36
SHMT1-207ENST00000580002 VPS4AQ9UN37 437 aa23.56■■□□□ 1.36
SHMT1-207ENST00000580002 CLIC1O00299 241 aa23.55■■□□□ 1.36
SHMT1-207ENST00000580002 CNOT3O75175 753 aaKnown RBP23.55■■□□□ 1.36
SHMT1-207ENST00000580002 NOVA1P51513 510 aaKnown RBP23.55■■□□□ 1.36
SHMT1-207ENST00000580002 ABHD18Q0P651 414 aa23.55■■□□□ 1.36
SHMT1-207ENST00000580002 FAM69BQ5VUD6 431 aa23.55■■□□□ 1.36
SHMT1-207ENST00000580002 TMEM107Q6UX40 140 aa23.55■■□□□ 1.36
SHMT1-207ENST00000580002 IFNEQ86WN2 208 aa23.55■■□□□ 1.36
SHMT1-207ENST00000580002 OR10A6Q8NH74 314 aa23.55■■□□□ 1.36
SHMT1-207ENST00000580002 SLC35A5Q9BS91 424 aa23.55■■□□□ 1.36
SHMT1-207ENST00000580002 TPT1P8Q9HAU6 139 aa23.55■■□□□ 1.36
SHMT1-207ENST00000580002 CLK4Q9HAZ1 481 aaKnown RBP23.55■■□□□ 1.36
SHMT1-207ENST00000580002 AKAP7Q9P0M2 348 aaPredicted RBP23.55■■□□□ 1.36
SHMT1-207ENST00000580002 MEN1O00255 615 aa23.55■■□□□ 1.36
SHMT1-207ENST00000580002 CTNSO60931 367 aa23.55■■□□□ 1.36
SHMT1-207ENST00000580002 PORP16435 677 aaPredicted RBP23.55■■□□□ 1.36
SHMT1-207ENST00000580002 CORO7P57737 925 aa23.55■■□□□ 1.36
SHMT1-207ENST00000580002 MS4A2Q01362 244 aa23.55■■□□□ 1.36
SHMT1-207ENST00000580002 LIPEQ05469 1076 aa23.55■■□□□ 1.36
SHMT1-207ENST00000580002 C3orf38Q5JPI3 329 aa23.55■■□□□ 1.36
SHMT1-207ENST00000580002 COX20Q5RI15 118 aa23.55■■□□□ 1.36
SHMT1-207ENST00000580002 FAM111BQ6SJ93 734 aa23.55■■□□□ 1.36
SHMT1-207ENST00000580002 BPHLQ86WA6 291 aaPredicted RBP23.55■■□□□ 1.36
SHMT1-207ENST00000580002 ZNF595Q8IYB9 648 aa23.55■■□□□ 1.36
SHMT1-207ENST00000580002 LRRC25Q8N386 305 aaPredicted RBP23.55■■□□□ 1.36
SHMT1-207ENST00000580002 FAM13CQ8NE31 585 aa23.55■■□□□ 1.36
SHMT1-207ENST00000580002 WDR60Q8WVS4 1066 aa23.55■■□□□ 1.36
SHMT1-207ENST00000580002 TSLPQ969D9 159 aa23.55■■□□□ 1.36
SHMT1-207ENST00000580002 MESP1Q9BRJ9 268 aa23.55■■□□□ 1.36
SHMT1-207ENST00000580002 ULBP3Q9BZM4 244 aa23.55■■□□□ 1.36
SHMT1-207ENST00000580002 PCDHAC1Q9H158 963 aa23.55■■□□□ 1.36
SHMT1-207ENST00000580002 PRPF19Q9UMS4 504 aaKnown RBP23.55■■□□□ 1.36
SHMT1-207ENST00000580002 CT62P0C5K7 136 aa23.54■■□□□ 1.36
SHMT1-207ENST00000580002 ZCCHC18P0CG32 403 aa23.54■■□□□ 1.36
SHMT1-207ENST00000580002 MPIP34949 423 aa23.54■■□□□ 1.36
SHMT1-207ENST00000580002 MVDP53602 400 aa23.54■■□□□ 1.36
SHMT1-207ENST00000580002 DCDP81605 110 aaKnown RBP23.54■■□□□ 1.36
SHMT1-207ENST00000580002 MLC1Q15049 377 aa23.54■■□□□ 1.36
SHMT1-207ENST00000580002 MINDY4Q4G0A6 757 aa23.54■■□□□ 1.36
SHMT1-207ENST00000580002 MFSD4BQ5TF39 518 aa23.54■■□□□ 1.36
SHMT1-207ENST00000580002 ALOXE3Q9BYJ1 711 aa23.54■■□□□ 1.36
SHMT1-207ENST00000580002 EPS8L2Q9H6S3 715 aa23.54■■□□□ 1.36
SHMT1-207ENST00000580002 GIMAP4Q9NUV9 329 aa23.54■■□□□ 1.36
SHMT1-207ENST00000580002 SATB2Q9UPW6 733 aa23.54■■□□□ 1.36
SHMT1-207ENST00000580002 L3MBTL1Q9Y468 752 aa23.54■■□□□ 1.36
SHMT1-207ENST00000580002 CFAP73A6NFT4 308 aa23.53■■□□□ 1.36
SHMT1-207ENST00000580002 C9orf172C9J069 976 aa23.53■■□□□ 1.36
SHMT1-207ENST00000580002 PLD2O14939 933 aa23.53■■□□□ 1.36
SHMT1-207ENST00000580002 DNAJA2O60884 412 aa23.53■■□□□ 1.36
SHMT1-207ENST00000580002 JMJD7P0C870 316 aa23.53■■□□□ 1.36
SHMT1-207ENST00000580002 GPC1P35052 558 aa23.53■■□□□ 1.36
SHMT1-207ENST00000580002 MC3RP41968 323 aa23.53■■□□□ 1.36
SHMT1-207ENST00000580002 GSK3BP49841 420 aa23.53■■□□□ 1.36
SHMT1-207ENST00000580002 RPS26P62854 115 aaKnown RBP23.53■■□□□ 1.36
SHMT1-207ENST00000580002 DDX59Q5T1V6 619 aaKnown RBP eCLIP23.53■■□□□ 1.36
SHMT1-207ENST00000580002 GPR155Q7Z3F1 870 aa23.53■■□□□ 1.36
SHMT1-207ENST00000580002 NATD1Q8N6N6 113 aa23.53■■□□□ 1.36
SHMT1-207ENST00000580002 GALNT6Q8NCL4 622 aa23.53■■□□□ 1.36
SHMT1-207ENST00000580002 OR8J3Q8NGG0 315 aa23.53■■□□□ 1.36
SHMT1-207ENST00000580002 DNAJB8Q8NHS0 232 aa23.53■■□□□ 1.36
SHMT1-207ENST00000580002 ZNF583Q96ND8 569 aa23.53■■□□□ 1.36
SHMT1-207ENST00000580002 PRDM9Q9NQV7 894 aa23.53■■□□□ 1.36
SHMT1-207ENST00000580002 ZNF282Q9UDV7 671 aaPredicted RBP23.53■■□□□ 1.36
SHMT1-207ENST00000580002 CCDC187A0A096LP49 1063 aa23.52■■□□□ 1.36
SHMT1-207ENST00000580002 CPNE3O75131 537 aaKnown RBP23.52■■□□□ 1.36
SHMT1-207ENST00000580002 NUDT7P0C024 238 aa23.52■■□□□ 1.36
SHMT1-207ENST00000580002 GZMMP51124 257 aa23.52■■□□□ 1.36
SHMT1-207ENST00000580002 OR4D2P58180 307 aa23.52■■□□□ 1.36
SHMT1-207ENST00000580002 TRMT12Q53H54 448 aaKnown RBP23.52■■□□□ 1.36
SHMT1-207ENST00000580002 OR7G2Q8NG99 324 aa23.52■■□□□ 1.36
SHMT1-207ENST00000580002 PSMA8Q8TAA3 256 aa23.52■■□□□ 1.36
SHMT1-207ENST00000580002 STT3BQ8TCJ2 826 aa23.52■■□□□ 1.36
SHMT1-207ENST00000580002 FAM120BQ96EK7 910 aaKnown RBP23.52■■□□□ 1.36
SHMT1-207ENST00000580002 PTCHD1Q96NR3 888 aa23.52■■□□□ 1.36
SHMT1-207ENST00000580002 KAT8Q9H7Z6 458 aaKnown RBP23.52■■□□□ 1.36
SHMT1-207ENST00000580002 FOXJ2Q9P0K8 574 aa23.52■■□□□ 1.36
SHMT1-207ENST00000580002 CCDC88CQ9P219 2028 aa23.52■■□□□ 1.36
SHMT1-207ENST00000580002 RNF103-CHMP3A0A140T963 221 aa23.52■■□□□ 1.36
SHMT1-207ENST00000580002 TMX2-CTNND1H3BSU7 103 aa23.52■■□□□ 1.36
SHMT1-207ENST00000580002 RECKO95980 971 aa23.52■■□□□ 1.36
SHMT1-207ENST00000580002 CEACAM1P13688 526 aa23.52■■□□□ 1.36
SHMT1-207ENST00000580002 UQCRC2P22695 453 aa23.52■■□□□ 1.36
SHMT1-207ENST00000580002 CCT3P49368 545 aaKnown RBP23.52■■□□□ 1.36
SHMT1-207ENST00000580002 LRRC74AQ0VAA2 488 aa23.52■■□□□ 1.36
SHMT1-207ENST00000580002 MGAT2Q10469 447 aa23.52■■□□□ 1.36
SHMT1-207ENST00000580002 STX4Q12846 297 aa23.52■■□□□ 1.36
SHMT1-207ENST00000580002 DCAF12Q5T6F0 453 aa23.52■■□□□ 1.36
SHMT1-207ENST00000580002 MLIPQ5VWP3 458 aa23.52■■□□□ 1.36
SHMT1-207ENST00000580002 CEACAM20Q6UY09 585 aa23.52■■□□□ 1.36
SHMT1-207ENST00000580002 ELP4Q96EB1 424 aa23.52■■□□□ 1.36
SHMT1-207ENST00000580002 DPH2Q9BQC3 489 aaPredicted RBP23.52■■□□□ 1.36
SHMT1-207ENST00000580002 SOX17Q9H6I2 414 aaPredicted RBP23.52■■□□□ 1.36
SHMT1-207ENST00000580002 MRPS33Q9Y291 106 aaKnown RBP23.52■■□□□ 1.36
SHMT1-207ENST00000580002 HRKO00198 91 aa23.51■■□□□ 1.35
SHMT1-207ENST00000580002 CLDN4O14493 209 aa23.51■■□□□ 1.35
SHMT1-207ENST00000580002 DDX5P17844 614 aaKnown RBP23.51■■□□□ 1.35
SHMT1-207ENST00000580002 NT5EP21589 574 aa23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms