RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 GBP7Q8N8V2 638 aaPredicted RBP22.15■■□□□ 1.14
SHMT1-206ENST00000579558 NUBPLQ8TB37 319 aa22.15■■□□□ 1.14
SHMT1-206ENST00000579558 GPR137Q96N19 417 aa22.15■■□□□ 1.14
SHMT1-206ENST00000579558 KCNA7Q96RP8 456 aa22.15■■□□□ 1.14
SHMT1-206ENST00000579558 NPIPA1Q9UND3 350 aa22.15■■□□□ 1.14
SHMT1-206ENST00000579558 PCDHA9Q9Y5H5 950 aa22.15■■□□□ 1.14
SHMT1-206ENST00000579558 USP9YO00507 2555 aaPredicted RBP22.14■■□□□ 1.14
SHMT1-206ENST00000579558 UBFD1O14562 309 aaKnown RBP22.14■■□□□ 1.13
SHMT1-206ENST00000579558 PEX1O43933 1283 aa22.14■■□□□ 1.13
SHMT1-206ENST00000579558 GP1BBP13224 206 aa22.14■■□□□ 1.13
SHMT1-206ENST00000579558 ZNF24P17028 368 aa22.14■■□□□ 1.13
SHMT1-206ENST00000579558 DNAJB13P59910 316 aa22.14■■□□□ 1.13
SHMT1-206ENST00000579558 C1QL3Q5VWW1 255 aa22.14■■□□□ 1.13
SHMT1-206ENST00000579558 RNF111Q6ZNA4 994 aa22.14■■□□□ 1.13
SHMT1-206ENST00000579558 FRMD7Q6ZUT3 714 aa22.14■■□□□ 1.13
SHMT1-206ENST00000579558 POGLUT1Q8NBL1 392 aa22.14■■□□□ 1.13
SHMT1-206ENST00000579558 CHTF18Q8WVB6 975 aa22.14■■□□□ 1.13
SHMT1-206ENST00000579558 CAVIN3Q969G5 261 aa22.14■■□□□ 1.13
SHMT1-206ENST00000579558 ACPTQ9BZG2 426 aa22.14■■□□□ 1.13
SHMT1-206ENST00000579558 MID2Q9UJV3 735 aa22.14■■□□□ 1.13
SHMT1-206ENST00000579558 A0A1B0GUH1 482 aa22.13■■□□□ 1.13
SHMT1-206ENST00000579558 C1orf226A1L170 272 aa22.13■■□□□ 1.13
SHMT1-206ENST00000579558 WIPF3A6NGB9 483 aa22.13■■□□□ 1.13
SHMT1-206ENST00000579558 ESPNB1AK53 854 aa22.13■■□□□ 1.13
SHMT1-206ENST00000579558 XKP51811 444 aa22.13■■□□□ 1.13
SHMT1-206ENST00000579558 PER3P56645 1201 aa22.13■■□□□ 1.13
SHMT1-206ENST00000579558 GPR85P60893 370 aa22.13■■□□□ 1.13
SHMT1-206ENST00000579558 HMGCS1Q01581 520 aa22.13■■□□□ 1.13
SHMT1-206ENST00000579558 ASPHQ12797 758 aa22.13■■□□□ 1.13
SHMT1-206ENST00000579558 MPEG1Q2M385 716 aa22.13■■□□□ 1.13
SHMT1-206ENST00000579558 KRTCAP3Q53RY4 240 aa22.13■■□□□ 1.13
SHMT1-206ENST00000579558 OPN5Q6U736 354 aa22.13■■□□□ 1.13
SHMT1-206ENST00000579558 SCIMPQ6UWF3 145 aa22.13■■□□□ 1.13
SHMT1-206ENST00000579558 SLC29A4Q7RTT9 530 aa22.13■■□□□ 1.13
SHMT1-206ENST00000579558 SIAH3Q8IW03 269 aa22.13■■□□□ 1.13
SHMT1-206ENST00000579558 PSD4Q8NDX1 1056 aa22.13■■□□□ 1.13
SHMT1-206ENST00000579558 TM4SF18Q96CE8 201 aa22.13■■□□□ 1.13
SHMT1-206ENST00000579558 FAIM2Q9BWQ8 316 aa22.13■■□□□ 1.13
SHMT1-206ENST00000579558 IQCGQ9H095 443 aaKnown RBP22.13■■□□□ 1.13
SHMT1-206ENST00000579558 CXorf21Q9HAI6 301 aa22.13■■□□□ 1.13
SHMT1-206ENST00000579558 OXSMQ9NWU1 459 aa22.13■■□□□ 1.13
SHMT1-206ENST00000579558 SPTAN1Q13813 2472 aaKnown RBP22.12■■□□□ 1.13
SHMT1-206ENST00000579558 ZNF354AO60765 605 aaPredicted RBP22.12■■□□□ 1.13
SHMT1-206ENST00000579558 DEKP35659 375 aaKnown RBP22.12■■□□□ 1.13
SHMT1-206ENST00000579558 FOXA1P55317 472 aa22.12■■□□□ 1.13
SHMT1-206ENST00000579558 TRA2BP62995 288 aaKnown RBP22.12■■□□□ 1.13
SHMT1-206ENST00000579558 PIGGQ5H8A4 983 aa22.12■■□□□ 1.13
SHMT1-206ENST00000579558 RNFT1Q5M7Z0 435 aa22.12■■□□□ 1.13
SHMT1-206ENST00000579558 C6orf163Q5TEZ5 329 aa22.12■■□□□ 1.13
SHMT1-206ENST00000579558 SLC48A1Q6P1K1 146 aa22.12■■□□□ 1.13
SHMT1-206ENST00000579558 TRABD2AQ86V40 505 aa22.12■■□□□ 1.13
SHMT1-206ENST00000579558 FJX1Q86VR8 437 aa22.12■■□□□ 1.13
SHMT1-206ENST00000579558 GALNT12Q8IXK2 581 aa22.12■■□□□ 1.13
SHMT1-206ENST00000579558 MMP21Q8N119 569 aa22.12■■□□□ 1.13
SHMT1-206ENST00000579558 SLC22A8Q8TCC7 542 aa22.12■■□□□ 1.13
SHMT1-206ENST00000579558 APOPT1Q96IL0 206 aa22.12■■□□□ 1.13
SHMT1-206ENST00000579558 GAL3ST4Q96RP7 486 aa22.12■■□□□ 1.13
SHMT1-206ENST00000579558 MKS1Q9NXB0 559 aa22.12■■□□□ 1.13
SHMT1-206ENST00000579558 LGALS13Q9UHV8 139 aa22.12■■□□□ 1.13
SHMT1-206ENST00000579558 MCM8Q9UJA3 840 aa22.12■■□□□ 1.13
SHMT1-206ENST00000579558 CES1P1Q9UKY3 287 aa22.12■■□□□ 1.13
SHMT1-206ENST00000579558 TRGV8A0A0C4DH27 118 aa22.11■■□□□ 1.13
SHMT1-206ENST00000579558 A1L4Q6 167 aa22.11■■□□□ 1.13
SHMT1-206ENST00000579558 GOLGA6L10A6NI86 522 aa22.11■■□□□ 1.13
SHMT1-206ENST00000579558 H3BQF6 201 aa22.11■■□□□ 1.13
SHMT1-206ENST00000579558 PCDH7O60245 1069 aa22.11■■□□□ 1.13
SHMT1-206ENST00000579558 CRCPO75575 148 aa22.11■■□□□ 1.13
SHMT1-206ENST00000579558 CPMP14384 443 aa22.11■■□□□ 1.13
SHMT1-206ENST00000579558 PORP16435 677 aaPredicted RBP22.11■■□□□ 1.13
SHMT1-206ENST00000579558 NT5EP21589 574 aa22.11■■□□□ 1.13
SHMT1-206ENST00000579558 RFC3P40938 356 aa22.11■■□□□ 1.13
SHMT1-206ENST00000579558 ALDH9A1P49189 494 aa22.11■■□□□ 1.13
SHMT1-206ENST00000579558 SLC37A1P57057 533 aa22.11■■□□□ 1.13
SHMT1-206ENST00000579558 ACSM2AQ08AH3 577 aa22.11■■□□□ 1.13
SHMT1-206ENST00000579558 ERCC6LQ2NKX8 1250 aa22.11■■□□□ 1.13
SHMT1-206ENST00000579558 ZNF800Q2TB10 664 aaPredicted RBP eCLIP22.11■■□□□ 1.13
SHMT1-206ENST00000579558 ZNF750Q32MQ0 723 aa22.11■■□□□ 1.13
SHMT1-206ENST00000579558 SPIN4Q56A73 249 aa22.11■■□□□ 1.13
SHMT1-206ENST00000579558 LIPMQ5VYY2 423 aa22.11■■□□□ 1.13
SHMT1-206ENST00000579558 ACSM2BQ68CK6 577 aa22.11■■□□□ 1.13
SHMT1-206ENST00000579558 RTL4Q6ZR62 310 aa22.11■■□□□ 1.13
SHMT1-206ENST00000579558 APIPQ96GX9 242 aa22.11■■□□□ 1.13
SHMT1-206ENST00000579558 ROPN1BQ9BZX4 212 aaPredicted RBP22.11■■□□□ 1.13
SHMT1-206ENST00000579558 ROPN1Q9HAT0 212 aaPredicted RBP22.11■■□□□ 1.13
SHMT1-206ENST00000579558 PLEKHB1Q9UF11 243 aaPredicted RBP22.11■■□□□ 1.13
SHMT1-206ENST00000579558 ICE1Q9Y2F5 2266 aa22.11■■□□□ 1.13
SHMT1-206ENST00000579558 SPTBN1Q01082 2364 aaKnown RBP22.11■■□□□ 1.13
SHMT1-206ENST00000579558 OR6C76A6NM76 312 aa22.1■■□□□ 1.13
SHMT1-206ENST00000579558 TFECO14948 347 aaPredicted RBP22.1■■□□□ 1.13
SHMT1-206ENST00000579558 ASNA1O43681 348 aa22.1■■□□□ 1.13
SHMT1-206ENST00000579558 ERAL1O75616 437 aaKnown RBP22.1■■□□□ 1.13
SHMT1-206ENST00000579558 CT62P0C5K7 136 aa22.1■■□□□ 1.13
SHMT1-206ENST00000579558 SSTR4P31391 388 aa22.1■■□□□ 1.13
SHMT1-206ENST00000579558 BTKQ06187 659 aa22.1■■□□□ 1.13
SHMT1-206ENST00000579558 C10orf107Q8IVU9 208 aa22.1■■□□□ 1.13
SHMT1-206ENST00000579558 SRRM1Q8IYB3 904 aaKnown RBP22.1■■□□□ 1.13
SHMT1-206ENST00000579558 RELTQ969Z4 430 aa22.1■■□□□ 1.13
SHMT1-206ENST00000579558 KLHL29Q96CT2 875 aa22.1■■□□□ 1.13
SHMT1-206ENST00000579558 MAGED4Q96JG8 741 aa22.1■■□□□ 1.13
SHMT1-206ENST00000579558 SGCZQ96LD1 299 aa22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms