RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 RASSF5Q8WWW0 418 aa21.57■■□□□ 1.04
VPS53-211ENST00000571805 SEMA3GQ9NS98 782 aa21.57■■□□□ 1.04
VPS53-211ENST00000571805 DNAJC27Q9NZQ0 273 aa21.57■■□□□ 1.04
VPS53-211ENST00000571805 SEC14L3Q9UDX4 400 aa21.57■■□□□ 1.04
VPS53-211ENST00000571805 CLEC2DQ9UHP7 191 aa21.57■■□□□ 1.04
VPS53-211ENST00000571805 A4GNTQ9UNA3 340 aa21.57■■□□□ 1.04
VPS53-211ENST00000571805 GPC6Q9Y625 555 aaPredicted RBP21.57■■□□□ 1.04
VPS53-211ENST00000571805 HAT1O14929 419 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 SLC28A2O43868 658 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 NFATC1O95644 943 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 CD72P21854 359 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 NCF4Q15080 339 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 PIP5KL1Q5T9C9 394 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 MEDAGQ5VYS4 303 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 TBC1D19Q8N5T2 526 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 KLHL6Q8WZ60 621 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 SLC6A18Q96N87 628 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 TEFMQ96QE5 360 aaKnown RBP21.56■■□□□ 1.04
VPS53-211ENST00000571805 AICDAQ9GZX7 198 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 POLR2J3Q9H1A7 115 aaKnown RBP21.56■■□□□ 1.04
VPS53-211ENST00000571805 MVB12BQ9H7P6 319 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 CFL2Q9Y281 166 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 NUMA1Q14980 2115 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 IGLON5A6NGN9 336 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 PPM1DO15297 605 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 SLITRK5O94991 958 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 KCNK2O95069 426 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 SOX6P35712 828 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 GSTM5P46439 218 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 CSNK1G2P78368 415 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 WSCD2Q2TBF2 565 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 CCDC190Q86UF4 302 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 RAB7BQ96AH8 199 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 OR51I1Q9H343 314 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 MKLN1Q9UL63 735 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 PCDHGB6Q9Y5F9 930 aa21.56■■□□□ 1.04
VPS53-211ENST00000571805 DNMT3AQ9Y6K1 912 aaPredicted RBP21.56■■□□□ 1.04
VPS53-211ENST00000571805 H3BN98 237 aa21.55■■□□□ 1.04
VPS53-211ENST00000571805 MED26O95402 600 aa21.55■■□□□ 1.04
VPS53-211ENST00000571805 CKMT1AP12532 417 aa21.55■■□□□ 1.04
VPS53-211ENST00000571805 SPNP16150 400 aa21.55■■□□□ 1.04
VPS53-211ENST00000571805 IL12RB1P42701 662 aa21.55■■□□□ 1.04
VPS53-211ENST00000571805 PIN1Q13526 163 aaPredicted RBP21.55■■□□□ 1.04
VPS53-211ENST00000571805 FAM78AQ5JUQ0 283 aa21.55■■□□□ 1.04
VPS53-211ENST00000571805 OR4C11Q6IEV9 310 aa21.55■■□□□ 1.04
VPS53-211ENST00000571805 ST13P5Q8NFI4 369 aaPredicted RBP21.55■■□□□ 1.04
VPS53-211ENST00000571805 OR5D16Q8NGK9 328 aa21.55■■□□□ 1.04
VPS53-211ENST00000571805 CREB3L4Q8TEY5 395 aa21.55■■□□□ 1.04
VPS53-211ENST00000571805 TMEM80Q96HE8 168 aa21.55■■□□□ 1.04
VPS53-211ENST00000571805 GLIPR2Q9H4G4 154 aa21.55■■□□□ 1.04
VPS53-211ENST00000571805 PRSS16Q9NQE7 514 aa21.55■■□□□ 1.04
VPS53-211ENST00000571805 CAB39Q9Y376 341 aaPredicted RBP21.55■■□□□ 1.04
VPS53-211ENST00000571805 A0A0A6YYD5 115 aa21.55■■□□□ 1.04
VPS53-211ENST00000571805 A0A0G2JN53 185 aa21.55■■□□□ 1.04
VPS53-211ENST00000571805 WASHC1A8K0Z3 465 aa21.55■■□□□ 1.04
VPS53-211ENST00000571805 C1QTNF3-AMACRE9PGA6 284 aa21.55■■□□□ 1.04
VPS53-211ENST00000571805 CLCNKAP51800 687 aa21.55■■□□□ 1.04
VPS53-211ENST00000571805 SMIM11AP58511 58 aa21.55■■□□□ 1.04
VPS53-211ENST00000571805 TARDBPQ13148 414 aaKnown RBP eCLIP21.55■■□□□ 1.04
VPS53-211ENST00000571805 CASP12Q6UXS9 341 aa21.55■■□□□ 1.04
VPS53-211ENST00000571805 WASH2PQ6VEQ5 465 aa21.55■■□□□ 1.04
VPS53-211ENST00000571805 NCCRP1Q6ZVX7 275 aaPredicted RBP21.55■■□□□ 1.04
VPS53-211ENST00000571805 AMDHD1Q96NU7 426 aa21.55■■□□□ 1.04
VPS53-211ENST00000571805 DPH7Q9BTV6 452 aa21.55■■□□□ 1.04
VPS53-211ENST00000571805 P2RX2Q9UBL9 471 aa21.55■■□□□ 1.04
VPS53-211ENST00000571805 IGKV1-8A0A0C4DH67 115 aa21.54■■□□□ 1.04
VPS53-211ENST00000571805 CSO75390 466 aaKnown RBP21.54■■□□□ 1.04
VPS53-211ENST00000571805 PTTG1O95997 202 aa21.54■■□□□ 1.04
VPS53-211ENST00000571805 TRA2BP62995 288 aaKnown RBP21.54■■□□□ 1.04
VPS53-211ENST00000571805 SELENBP1Q13228 472 aa21.54■■□□□ 1.04
VPS53-211ENST00000571805 FAM46CQ5VWP2 391 aa21.54■■□□□ 1.04
VPS53-211ENST00000571805 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP21.54■■□□□ 1.04
VPS53-211ENST00000571805 BCDIN3DQ7Z5W3 292 aaKnown RBP21.54■■□□□ 1.04
VPS53-211ENST00000571805 OR8J1Q8NGP2 316 aa21.54■■□□□ 1.04
VPS53-211ENST00000571805 XAGE5Q8WWM1 108 aa21.54■■□□□ 1.04
VPS53-211ENST00000571805 SUSD6Q92537 303 aa21.54■■□□□ 1.04
VPS53-211ENST00000571805 SLC35G5Q96KT7 338 aa21.54■■□□□ 1.04
VPS53-211ENST00000571805 HCN2Q9UL51 889 aa21.54■■□□□ 1.04
VPS53-211ENST00000571805 WDR37Q9Y2I8 494 aa21.54■■□□□ 1.04
VPS53-211ENST00000571805 TRPM6Q9BX84 2022 aa21.54■■□□□ 1.04
VPS53-211ENST00000571805 CTDSP2O14595 271 aa21.54■■□□□ 1.04
VPS53-211ENST00000571805 SNX4O95219 450 aa21.54■■□□□ 1.04
VPS53-211ENST00000571805 ALOX12P18054 663 aa21.54■■□□□ 1.04
VPS53-211ENST00000571805 ENDOUP21128 410 aaKnown RBP21.54■■□□□ 1.04
VPS53-211ENST00000571805 MAGEA8P43361 318 aa21.54■■□□□ 1.04
VPS53-211ENST00000571805 TMED10P49755 219 aaKnown RBP21.54■■□□□ 1.04
VPS53-211ENST00000571805 OCLNQ16625 522 aa21.54■■□□□ 1.04
VPS53-211ENST00000571805 MFSD4BQ5TF39 518 aa21.54■■□□□ 1.04
VPS53-211ENST00000571805 KIAA1161Q6NSJ0 714 aa21.54■■□□□ 1.04
VPS53-211ENST00000571805 PODNL1Q6PEZ8 512 aa21.54■■□□□ 1.04
VPS53-211ENST00000571805 TCEANCQ8N8B7 351 aa21.54■■□□□ 1.04
VPS53-211ENST00000571805 SDHCQ99643 169 aaPredicted RBP21.54■■□□□ 1.04
VPS53-211ENST00000571805 NUAK2Q9H093 628 aa21.54■■□□□ 1.04
VPS53-211ENST00000571805 KLHL25Q9H0H3 589 aa21.54■■□□□ 1.04
VPS53-211ENST00000571805 RPL36Q9Y3U8 105 aaKnown RBP21.54■■□□□ 1.04
VPS53-211ENST00000571805 C5orf42Q9H799 3197 aa21.54■■□□□ 1.04
VPS53-211ENST00000571805 A0A075B6Q4 140 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 A0A1W2PRQ8 180 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 M0R3H8 397 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 SLC35G4P0C7Q5 338 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms