RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 ZNF704Q6ZNC4 412 aaPredicted RBP10.67□□□□□ -0.7
CLK3-222ENST00000568232 THOC6Q86W42 341 aaKnown RBP10.67□□□□□ -0.7
CLK3-222ENST00000568232 MYO1HQ8N1T3 1032 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 CCDC89Q8N998 374 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 LRRC57Q8N9N7 239 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 FBXL8Q96CD0 374 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 LINGO1Q96FE5 620 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 PGM2Q96G03 612 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 SERINC2Q96SA4 455 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 MAPKAP1Q9BPZ7 522 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 TEX10Q9NXF1 929 aaPredicted RBP10.67□□□□□ -0.7
CLK3-222ENST00000568232 PSD3Q9NYI0 1048 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 CLCF1Q9UBD9 225 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 SLC22A14Q9Y267 594 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 DTX4Q9Y2E6 619 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 DYRK1BQ9Y463 629 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 NINQ8N4C6 2090 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.66□□□□□ -0.7
CLK3-222ENST00000568232 SYNDIG1LA6NDD5 238 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 LRRC14BA6NHZ5 514 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 BTNL10A8MVZ5 291 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 C16orf97H3BN30 126 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 ADAM11O75078 769 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 SIX3O95343 332 aaPredicted RBP10.66□□□□□ -0.7
CLK3-222ENST00000568232 ACTL6AO96019 429 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 TPM3P06753 285 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 THBDP07204 575 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 POU2F1P14859 743 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 PTPN6P29350 595 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 IDUAP35475 653 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 KCNJ5P48544 419 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 STARP49675 285 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 RGS4P49798 205 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 MTTPP55157 894 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 THOC5Q13769 683 aaKnown RBP10.66□□□□□ -0.7
CLK3-222ENST00000568232 DHX34Q14147 1143 aaKnown RBP10.66□□□□□ -0.7
CLK3-222ENST00000568232 TBCELQ5QJ74 424 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 ADNP2Q6IQ32 1131 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 CAVIN1Q6NZI2 390 aaKnown RBP10.66□□□□□ -0.7
CLK3-222ENST00000568232 SBSNQ6UWP8 590 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 SH2D5Q6ZV89 423 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 VSTM4Q8IW00 320 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 DND1Q8IYX4 353 aaKnown RBP10.66□□□□□ -0.7
CLK3-222ENST00000568232 ZNF611Q8N823 705 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 CNEP1R1Q8N9A8 125 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 OR2L5Q8NG80 312 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 ROBO4Q8WZ75 1007 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 UCN2Q96RP3 112 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 REXO4Q9GZR2 422 aaKnown RBP10.66□□□□□ -0.7
CLK3-222ENST00000568232 WWTR1Q9GZV5 400 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 SLCO5A1Q9H2Y9 848 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 ACBD3Q9H3P7 528 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 PRDM7Q9NQW5 492 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 MAPRE3Q9UPY8 281 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 HEATR5AQ86XA9 2040 aa10.66□□□□□ -0.7
CLK3-222ENST00000568232 A0A088AWK7 358 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 HS3ST1O14792 307 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 FGF17O60258 216 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 NDUFS7O75251 213 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 SNX4O95219 450 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 COX7A2P14406 83 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 PAMP19021 973 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 ZNF10P21506 573 aaPredicted RBP10.65□□□□□ -0.7
CLK3-222ENST00000568232 CDKN1AP38936 164 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 CASP3P42574 277 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 STT3AP46977 705 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 CDKN2DP55273 166 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 RPS4XP62701 263 aaKnown RBP10.65□□□□□ -0.7
CLK3-222ENST00000568232 RPS6KA2Q15349 733 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 SPA17Q15506 151 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 LRRC8EQ6NSJ5 796 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 CASC4Q6P4E1 433 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 TRIM40Q6P9F5 258 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 ABHD17CQ6PCB6 329 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 BRICD5Q6PL45 260 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 TMIGD1Q6UXZ0 262 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 VN1R5Q7Z5H4 357 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 GRAMD2AQ8IUY3 354 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 TRIM42Q8IWZ5 723 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 UBL4BQ8N7F7 174 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 ARIH2OSQ8N7S6 290 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 SPPL2AQ8TCT8 520 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 ZNF669Q96BR6 464 aaPredicted RBP10.65□□□□□ -0.7
CLK3-222ENST00000568232 ART5Q96L15 291 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 DGAT2Q96PD7 388 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 IKZF3Q9UKT9 509 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 COMMD10Q9Y6G5 202 aa10.65□□□□□ -0.7
CLK3-222ENST00000568232 ZCWPW2A0A1B0GU75 182 aa10.64□□□□□ -0.71
CLK3-222ENST00000568232 PABPN1LA6NDY0 278 aaKnown RBP10.64□□□□□ -0.71
CLK3-222ENST00000568232 AKR1B15C9JRZ8 316 aaPredicted RBP10.64□□□□□ -0.71
CLK3-222ENST00000568232 OVOL3O00110 214 aa10.64□□□□□ -0.71
CLK3-222ENST00000568232 AP3B1O00203 1094 aa10.64□□□□□ -0.71
CLK3-222ENST00000568232 PLOD2O00469 737 aa10.64□□□□□ -0.71
CLK3-222ENST00000568232 TP53I11O14683 189 aa10.64□□□□□ -0.71
CLK3-222ENST00000568232 TMCC2O75069 709 aa10.64□□□□□ -0.71
CLK3-222ENST00000568232 FTCDO95954 541 aa10.64□□□□□ -0.71
CLK3-222ENST00000568232 IGHV4-39P01824 125 aa10.64□□□□□ -0.71
CLK3-222ENST00000568232 KIR2DL2P43627 348 aaPredicted RBP10.64□□□□□ -0.71
CLK3-222ENST00000568232 PCYT1AP49585 367 aa10.64□□□□□ -0.71
CLK3-222ENST00000568232 AP1S2P56377 157 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms