RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 SNX8Q9Y5X2 465 aa12.59□□□□□ -0.39
VPS4A-204ENST00000566354 PRAMEF33A0A0G2JMD5 474 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 TMEM202A6NGA9 273 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 K7EQS6 105 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 FOXE1O00358 373 aaPredicted RBP12.58□□□□□ -0.4
VPS4A-204ENST00000566354 PRAMEF10O60809 474 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 KCNJ13O60928 360 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 SLITRK5O94991 958 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 FURINP09958 794 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 TNFSF8P32971 234 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 CNR2P34972 360 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 CHI3L1P36222 383 aaPredicted RBP12.58□□□□□ -0.4
VPS4A-204ENST00000566354 PCBP3P57721 371 aaKnown RBP12.58□□□□□ -0.4
VPS4A-204ENST00000566354 OR2B6P58173 313 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 COPZ1P61923 177 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 RHAGQ02094 409 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 TFF2Q03403 129 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 PDE7AQ13946 482 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 SMAD2Q15796 467 aaKnown RBP12.58□□□□□ -0.4
VPS4A-204ENST00000566354 SSX1Q16384 188 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 CCSMST1Q4G0I0 132 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 CYP27C1Q4G0S4 372 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 KLHL17Q6TDP4 642 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 GDPGP1Q6ZNW5 385 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 PRR23CQ6ZRP0 262 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 RNF130Q86XS8 419 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.58□□□□□ -0.4
VPS4A-204ENST00000566354 SLC30A8Q8IWU4 369 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 RAVER1Q8IY67 606 aaKnown RBP12.58□□□□□ -0.4
VPS4A-204ENST00000566354 CELF2-AS1Q8N7Q2 184 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 NEIL2Q969S2 332 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 TP63Q9H3D4 680 aaPredicted RBP12.58□□□□□ -0.4
VPS4A-204ENST00000566354 TAS2R9Q9NYW1 312 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 ANGPT4Q9Y264 503 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 PIAS3Q9Y6X2 628 aa12.58□□□□□ -0.4
VPS4A-204ENST00000566354 EDDM13A0A1B0GTR0 161 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 CDK2AP1O14519 115 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 ZNF254O75437 659 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 GPX5O75715 221 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 KRT75O95678 551 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 GASTP01350 101 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 IFNW1P05000 195 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 SCG5P05408 212 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 EPHX1P07099 455 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 ARAFP10398 606 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 CYP2A6P11509 494 aaPredicted RBP12.57□□□□□ -0.4
VPS4A-204ENST00000566354 HTR3AP46098 478 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 STARD3Q14849 445 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 SLC5A12Q1EHB4 618 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 PTCRAQ6ISU1 281 aaPredicted RBP12.57□□□□□ -0.4
VPS4A-204ENST00000566354 VASH1Q7L8A9 365 aaPredicted RBP12.57□□□□□ -0.4
VPS4A-204ENST00000566354 DGLUCYQ7Z3D6 616 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 COMMD6Q7Z4G1 85 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 HSD11B1LQ7Z5J1 315 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 FOPNLQ96NB1 174 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 VPS35Q96QK1 796 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 RACGAP1Q9H0H5 632 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 ERVK13-1Q9NX77 482 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 ZNF221Q9UK13 617 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 GRIP1Q9Y3R0 1128 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 MAP4K5Q9Y4K4 846 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 TRBC2A0A5B9 178 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 NPC1O15118 1278 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 TSPAN6O43657 245 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 ATG13O75143 517 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 UGT2B17O75795 530 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 ADRA2AP08913 450 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 IL9P15248 144 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 NAGAP17050 411 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 BDKRB1P46663 353 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 DSTNP60981 165 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 C2orf80Q0P641 193 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 GANABQ14697 944 aaKnown RBP12.57□□□□□ -0.4
VPS4A-204ENST00000566354 BRAT1Q6PJG6 821 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 UNC5DQ6UXZ4 953 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 FAM92BQ6ZTR7 304 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 Q6ZVL8 140 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 SPATC1Q76KD6 591 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 TRIM69Q86WT6 500 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 UBQLNLQ8IYU4 475 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 TAGAPQ8N103 731 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 OR8H2Q8N162 312 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 TRAM1L1Q8N609 369 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 CIDECQ96AQ7 238 aaPredicted RBP12.57□□□□□ -0.4
VPS4A-204ENST00000566354 MTERF3Q96E29 417 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 GIMAP5Q96F15 307 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 ZSCAN5AQ9BUG6 496 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 WRAP53Q9BUR4 548 aaKnown RBP12.57□□□□□ -0.4
VPS4A-204ENST00000566354 ASPNQ9BXN1 380 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 OR2B2Q9GZK3 357 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 NMNAT1Q9HAN9 279 aaPredicted RBP12.57□□□□□ -0.4
VPS4A-204ENST00000566354 SLC25A19Q9HC21 320 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 SMURF1Q9HCE7 757 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 C14orf119Q9NWQ9 140 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 ACSL6Q9UKU0 697 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 RAB23Q9ULC3 237 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 STON1Q9Y6Q2 735 aa12.57□□□□□ -0.4
VPS4A-204ENST00000566354 DSPPQ9NZW4 1301 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 SLC5A10A0PJK1 596 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms