RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 ZFP64Q9NPA5 681 aa15.77■□□□□ 0.12
CLN3-216ENST00000565316 CNIH4Q9P003 139 aa15.77■□□□□ 0.12
CLN3-216ENST00000565316 ACAD8Q9UKU7 415 aa15.77■□□□□ 0.12
CLN3-216ENST00000565316 ANGPTL3Q9Y5C1 460 aa15.77■□□□□ 0.12
CLN3-216ENST00000565316 CHCHD2Q9Y6H1 151 aaPredicted RBP15.77■□□□□ 0.12
CLN3-216ENST00000565316 ITPR3Q14573 2671 aa15.77■□□□□ 0.11
CLN3-216ENST00000565316 EML6Q6ZMW3 1958 aa15.77■□□□□ 0.11
CLN3-216ENST00000565316 TRGV5A0A0B4J1U4 118 aa15.76■□□□□ 0.11
CLN3-216ENST00000565316 A0A0G2JNJ9 132 aa15.76■□□□□ 0.11
CLN3-216ENST00000565316 LRRC3CA6NJW4 275 aa15.76■□□□□ 0.11
CLN3-216ENST00000565316 WASHC1A8K0Z3 465 aa15.76■□□□□ 0.11
CLN3-216ENST00000565316 FOXE1O00358 373 aaPredicted RBP15.76■□□□□ 0.11
CLN3-216ENST00000565316 TMPRSS11DO60235 418 aa15.76■□□□□ 0.11
CLN3-216ENST00000565316 CLPSP04118 112 aa15.76■□□□□ 0.11
CLN3-216ENST00000565316 RFPL3SP0C7P2 107 aa15.76■□□□□ 0.11
CLN3-216ENST00000565316 ENDOUP21128 410 aaKnown RBP15.76■□□□□ 0.11
CLN3-216ENST00000565316 ADH7P40394 386 aa15.76■□□□□ 0.11
CLN3-216ENST00000565316 ZFP36L2P47974 494 aaKnown RBP15.76■□□□□ 0.11
CLN3-216ENST00000565316 SLC37A1P57057 533 aa15.76■□□□□ 0.11
CLN3-216ENST00000565316 HERVK_113P63132 956 aa15.76■□□□□ 0.11
CLN3-216ENST00000565316 ERVK-8P63133 956 aa15.76■□□□□ 0.11
CLN3-216ENST00000565316 ZNF572Q7Z3I7 529 aaPredicted RBP15.76■□□□□ 0.11
CLN3-216ENST00000565316 LRRC25Q8N386 305 aaPredicted RBP15.76■□□□□ 0.11
CLN3-216ENST00000565316 ZNF441Q8N8Z8 693 aa15.76■□□□□ 0.11
CLN3-216ENST00000565316 OR10Q1Q8NGQ4 319 aa15.76■□□□□ 0.11
CLN3-216ENST00000565316 WDR20Q8TBZ3 569 aa15.76■□□□□ 0.11
CLN3-216ENST00000565316 ERVK-6Q9BXR3 956 aa15.76■□□□□ 0.11
CLN3-216ENST00000565316 LDAHQ9H6V9 325 aa15.76■□□□□ 0.11
CLN3-216ENST00000565316 ACKR4Q9NPB9 350 aa15.76■□□□□ 0.11
CLN3-216ENST00000565316 SNX15Q9NRS6 342 aa15.76■□□□□ 0.11
CLN3-216ENST00000565316 QPCTLQ9NXS2 382 aa15.76■□□□□ 0.11
CLN3-216ENST00000565316 SPRR3Q9UBC9 169 aa15.76■□□□□ 0.11
CLN3-216ENST00000565316 Q9UFV3 132 aa15.76■□□□□ 0.11
CLN3-216ENST00000565316 BOKQ9UMX3 212 aaPredicted RBP15.76■□□□□ 0.11
CLN3-216ENST00000565316 ERVK-19Q9WJR5 959 aa15.76■□□□□ 0.11
CLN3-216ENST00000565316 PCDHGB3Q9Y5G1 929 aa15.76■□□□□ 0.11
CLN3-216ENST00000565316 ANKHD1Q8IWZ3 2542 aaKnown RBP15.76■□□□□ 0.11
CLN3-216ENST00000565316 IQANK1A0A1B0GTG1 560 aa15.75■□□□□ 0.11
CLN3-216ENST00000565316 LRRC14BA6NHZ5 514 aa15.75■□□□□ 0.11
CLN3-216ENST00000565316 OR6C76A6NM76 312 aa15.75■□□□□ 0.11
CLN3-216ENST00000565316 KLHL2O95198 593 aa15.75■□□□□ 0.11
CLN3-216ENST00000565316 FAM58BPP0C7Q3 252 aa15.75■□□□□ 0.11
CLN3-216ENST00000565316 SLC35E2P0CK97 266 aa15.75■□□□□ 0.11
CLN3-216ENST00000565316 NR2F6P10588 404 aa15.75■□□□□ 0.11
CLN3-216ENST00000565316 GFAPP14136 432 aa15.75■□□□□ 0.11
CLN3-216ENST00000565316 SERPINB3P29508 390 aa15.75■□□□□ 0.11
CLN3-216ENST00000565316 PIK3CGP48736 1102 aa15.75■□□□□ 0.11
CLN3-216ENST00000565316 PHEXP78562 749 aa15.75■□□□□ 0.11
CLN3-216ENST00000565316 GTF2H2Q13888 395 aa15.75■□□□□ 0.11
CLN3-216ENST00000565316 ZNF267Q14586 743 aaPredicted RBP15.75■□□□□ 0.11
CLN3-216ENST00000565316 EBPQ15125 230 aaKnown RBP15.75■□□□□ 0.11
CLN3-216ENST00000565316 NTRK2Q16620 822 aa15.75■□□□□ 0.11
CLN3-216ENST00000565316 C1orf185Q5T7R7 199 aa15.75■□□□□ 0.11
CLN3-216ENST00000565316 WLSQ5T9L3 541 aa15.75■□□□□ 0.11
CLN3-216ENST00000565316 MROH9Q5TGP6 573 aa15.75■□□□□ 0.11
CLN3-216ENST00000565316 GTF2H2CQ6P1K8 395 aa15.75■□□□□ 0.11
CLN3-216ENST00000565316 RNF111Q6ZNA4 994 aa15.75■□□□□ 0.11
CLN3-216ENST00000565316 SLC29A4Q7RTT9 530 aa15.75■□□□□ 0.11
CLN3-216ENST00000565316 MYLK4Q86YV6 388 aaPredicted RBP15.75■□□□□ 0.11
CLN3-216ENST00000565316 LIX1LQ8IVB5 337 aa15.75■□□□□ 0.11
CLN3-216ENST00000565316 CLYBLQ8N0X4 340 aa15.75■□□□□ 0.11
CLN3-216ENST00000565316 OR10G3Q8NGC4 313 aa15.75■□□□□ 0.11
CLN3-216ENST00000565316 DOK4Q8TEW6 326 aa15.75■□□□□ 0.11
CLN3-216ENST00000565316 RIT1Q92963 219 aa15.75■□□□□ 0.11
CLN3-216ENST00000565316 CNPPD1Q9BV87 410 aa15.75■□□□□ 0.11
CLN3-216ENST00000565316 CNOT11Q9UKZ1 510 aaKnown RBP15.75■□□□□ 0.11
CLN3-216ENST00000565316 TNPO3Q9Y5L0 923 aaKnown RBP15.75■□□□□ 0.11
CLN3-216ENST00000565316 ANKRD33BA6NCL7 494 aa15.74■□□□□ 0.11
CLN3-216ENST00000565316 GLOD5A6NK44 160 aa15.74■□□□□ 0.11
CLN3-216ENST00000565316 OR10H2O60403 315 aa15.74■□□□□ 0.11
CLN3-216ENST00000565316 AIFM1O95831 613 aa15.74■□□□□ 0.11
CLN3-216ENST00000565316 GABRA1P14867 456 aa15.74■□□□□ 0.11
CLN3-216ENST00000565316 DLX5P56178 289 aa15.74■□□□□ 0.11
CLN3-216ENST00000565316 KCNJ2P63252 427 aa15.74■□□□□ 0.11
CLN3-216ENST00000565316 CPSF6Q16630 551 aaKnown RBP eCLIP15.74■□□□□ 0.11
CLN3-216ENST00000565316 SLC25A35Q3KQZ1 300 aa15.74■□□□□ 0.11
CLN3-216ENST00000565316 RIPPLY2Q5TAB7 128 aa15.74■□□□□ 0.11
CLN3-216ENST00000565316 PRAMEF20Q5VT98 475 aa15.74■□□□□ 0.11
CLN3-216ENST00000565316 CES4AQ5XG92 561 aa15.74■□□□□ 0.11
CLN3-216ENST00000565316 GOLGA7Q7Z5G4 137 aa15.74■□□□□ 0.11
CLN3-216ENST00000565316 ZNF559Q9BR84 538 aa15.74■□□□□ 0.11
CLN3-216ENST00000565316 IPPKQ9H8X2 491 aa15.74■□□□□ 0.11
CLN3-216ENST00000565316 RNF11Q9Y3C5 154 aa15.74■□□□□ 0.11
CLN3-216ENST00000565316 A0A096LPK6 155 aa15.73■□□□□ 0.11
CLN3-216ENST00000565316 FAM47E-STBD1D6RA91 191 aa15.73■□□□□ 0.11
CLN3-216ENST00000565316 TRIM3O75382 744 aaPredicted RBP15.73■□□□□ 0.11
CLN3-216ENST00000565316 SEMA3DO95025 777 aa15.73■□□□□ 0.11
CLN3-216ENST00000565316 ALDOAP04075 364 aaKnown RBP15.73■□□□□ 0.11
CLN3-216ENST00000565316 NEK2P51955 445 aa15.73■□□□□ 0.11
CLN3-216ENST00000565316 CYP20A1Q6UW02 462 aa15.73■□□□□ 0.11
CLN3-216ENST00000565316 NUDT13Q86X67 352 aa15.73■□□□□ 0.11
CLN3-216ENST00000565316 TAGAPQ8N103 731 aa15.73■□□□□ 0.11
CLN3-216ENST00000565316 FAM13CQ8NE31 585 aa15.73■□□□□ 0.11
CLN3-216ENST00000565316 MYRIPQ8NFW9 859 aa15.73■□□□□ 0.11
CLN3-216ENST00000565316 NEIL3Q8TAT5 605 aa15.73■□□□□ 0.11
CLN3-216ENST00000565316 UCN3Q969E3 161 aa15.73■□□□□ 0.11
CLN3-216ENST00000565316 TP53INP1Q96A56 240 aa15.73■□□□□ 0.11
CLN3-216ENST00000565316 GAL3ST4Q96RP7 486 aa15.73■□□□□ 0.11
CLN3-216ENST00000565316 WDR41Q9HAD4 459 aa15.73■□□□□ 0.11
CLN3-216ENST00000565316 CXorf21Q9HAI6 301 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms